Wall clock time and date at job start Tue Mar 31 2020 20:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47199 * 2 1 4 4 N 1.46497 * 109.46729 * 120.00227 * 2 1 3 5 5 N 1.28439 * 125.19215 * 294.53510 * 4 2 1 6 6 C 1.30866 * 110.92571 * 179.88364 * 5 4 2 7 7 C 1.39669 * 107.86509 * 0.38295 * 6 5 4 8 8 C 1.36601 * 125.18661 * 114.84965 * 4 2 1 9 9 C 1.47163 * 126.88721 * 359.97438 * 8 4 2 10 10 O 1.21625 * 119.99862 * 5.25868 * 9 8 4 11 11 N 1.34778 * 120.00025 * 185.25437 * 9 8 4 12 12 C 1.46501 * 119.99842 * 185.11666 * 11 9 8 13 13 H 1.09002 * 109.47089 * 324.99537 * 12 11 9 14 14 C 1.52992 * 109.47246 * 84.99676 * 12 11 9 15 15 C 1.52996 * 109.46794 * 205.00001 * 12 11 9 16 16 N 1.46900 * 109.47518 * 54.99515 * 15 12 11 17 17 C 1.46903 * 111.00277 * 180.02562 * 16 15 12 18 18 C 1.50703 * 109.46935 * 180.02562 * 17 16 15 19 19 O 1.21287 * 120.00157 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99339 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99545 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00023 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00123 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00226 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00018 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47652 * 89.99579 * 25 23 21 27 27 H 1.48504 * 109.47390 * 209.99828 * 25 23 21 28 28 H 1.48504 * 109.46960 * 329.99380 * 25 23 21 29 29 H 1.08995 * 109.47577 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47146 * 59.99518 * 1 2 3 31 31 H 1.09000 * 109.47137 * 300.00519 * 1 2 3 32 32 H 1.08996 * 109.46782 * 239.99811 * 2 1 3 33 33 H 1.09000 * 109.46917 * 60.00190 * 3 2 1 34 34 H 1.08998 * 109.46904 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47465 * 300.00286 * 3 2 1 36 36 H 1.08008 * 126.06366 * 180.13907 * 6 5 4 37 37 H 1.08001 * 127.32141 * 179.75852 * 7 6 5 38 38 H 0.97001 * 119.99828 * 5.10436 * 11 9 8 39 39 H 1.09003 * 109.47126 * 179.97438 * 14 12 11 40 40 H 1.08995 * 109.47226 * 299.99708 * 14 12 11 41 41 H 1.08995 * 109.47203 * 60.00311 * 14 12 11 42 42 H 1.08999 * 109.47527 * 174.99893 * 15 12 11 43 43 H 1.09007 * 109.47331 * 294.99665 * 15 12 11 44 44 H 1.00899 * 111.00138 * 303.95843 * 16 15 12 45 45 H 1.08998 * 109.46786 * 299.99718 * 17 16 15 46 46 H 1.08994 * 109.47166 * 60.00181 * 17 16 15 47 47 H 0.96996 * 120.00672 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99794 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.8540 -0.2854 2.4038 6 6 2.4008 -1.1163 3.2541 7 6 2.9819 -2.1557 2.5242 8 6 2.7229 -1.8609 1.1969 9 6 3.1263 -2.6499 0.0219 10 8 2.9148 -2.2247 -1.0978 11 7 3.7301 -3.8435 0.1867 12 6 4.2323 -4.5772 -0.9776 13 1 3.5672 -4.4127 -1.8254 14 6 5.6364 -4.0801 -1.3270 15 6 4.2862 -6.0716 -0.6543 16 7 2.9630 -6.5231 -0.2033 17 6 2.9769 -7.9566 0.1174 18 6 1.6054 -8.3824 0.5746 19 8 0.7052 -7.5714 0.6283 20 7 1.3794 -9.6644 0.9237 21 6 0.1319 -10.0517 1.3400 22 1 -0.6695 -9.3294 1.3887 23 6 -0.1013 -11.3734 1.6994 24 7 -1.2970 -11.7445 2.0990 25 14 1.2849 -12.6226 1.6159 26 1 2.0008 -12.6555 2.9165 27 1 0.7236 -13.9665 1.3258 28 1 2.2326 -12.2391 0.5388 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 2.4057 -1.0142 4.3294 37 1 3.5193 -3.0081 2.9129 38 1 3.8323 -4.2166 1.0762 39 1 6.0102 -4.6263 -2.1931 40 1 5.5980 -3.0154 -1.5574 41 1 6.3015 -4.2447 -0.4794 42 1 4.5746 -6.6265 -1.5470 43 1 5.0180 -6.2467 0.1345 44 1 2.6447 -5.9796 0.5849 45 1 3.2563 -8.5247 -0.7698 46 1 3.6995 -8.1442 0.9116 47 1 2.0992 -10.3131 0.8803 48 1 -1.4596 -12.6672 2.3502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716438755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:21 Heat of formation + Delta-G solvation = -19.826549 kcal Electronic energy + Delta-G solvation = -29119.624343 eV Core-core repulsion = 25017.292137 eV Total energy + Delta-G solvation = -4102.332205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.57533 -40.77972 -40.23396 -37.93786 -36.73709 -36.05959 -35.14497 -33.74017 -32.91041 -31.34678 -31.01715 -29.09909 -28.33485 -26.65154 -25.17328 -24.39829 -23.84948 -22.54912 -21.53702 -21.30006 -20.75904 -20.23105 -19.01898 -17.79396 -17.59610 -17.11919 -16.93642 -16.78352 -16.50063 -16.01630 -15.82312 -15.58342 -15.57157 -15.29651 -14.93712 -14.91175 -14.47890 -14.20678 -14.08040 -14.05832 -14.01747 -13.43327 -13.21933 -13.15716 -13.12973 -13.03904 -12.80360 -12.71167 -12.46294 -12.40760 -12.29635 -11.99700 -11.92709 -11.80178 -11.50384 -11.02806 -10.47258 -10.37483 -10.24557 -10.09770 -9.98580 -9.30978 -8.40718 -6.02062 0.20894 1.31257 1.33841 1.36882 1.46148 1.65667 1.97198 2.11259 2.16593 2.24193 2.71686 3.15982 3.36034 3.45804 3.53848 3.83316 3.86855 3.95359 4.12151 4.14567 4.15956 4.23079 4.34451 4.46707 4.53747 4.56193 4.58641 4.59471 4.68283 4.70690 4.75597 4.78905 4.82594 4.83772 5.04595 5.08481 5.13056 5.29397 5.43057 5.53107 5.57369 5.78010 5.89927 6.03801 6.32038 6.36134 6.60413 6.89015 7.00138 7.10255 7.40669 7.98166 8.77116 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.002396 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.318111 B =11685.162563 C =12712.044974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.118 3.882 3 C -0.147 4.147 4 N -0.258 5.258 5 N -0.294 5.294 6 C -0.012 4.012 7 C -0.180 4.180 8 C -0.066 4.066 9 C 0.594 3.406 10 O -0.571 6.571 11 N -0.695 5.695 12 C 0.146 3.854 13 H 0.071 0.929 14 C -0.152 4.152 15 C 0.057 3.943 16 N -0.694 5.694 17 C 0.063 3.937 18 C 0.445 3.555 19 O -0.617 6.617 20 N -0.590 5.590 21 C -0.329 4.329 22 H 0.052 0.948 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.968 3.032 26 H -0.255 1.255 27 H -0.277 1.277 28 H -0.229 1.229 29 H 0.041 0.959 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.214 0.786 37 H 0.188 0.812 38 H 0.411 0.589 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.066 0.934 44 H 0.342 0.658 45 H 0.117 0.883 46 H 0.086 0.914 47 H 0.391 0.609 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.296 18.577 -2.733 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.019 3.981 3 C -0.205 4.205 4 N -0.047 5.047 5 N -0.127 5.127 6 C -0.187 4.187 7 C -0.209 4.209 8 C -0.194 4.194 9 C 0.380 3.620 10 O -0.452 6.452 11 N -0.347 5.347 12 C 0.041 3.959 13 H 0.090 0.910 14 C -0.211 4.211 15 C -0.072 4.072 16 N -0.327 5.327 17 C -0.069 4.069 18 C 0.233 3.767 19 O -0.502 6.502 20 N -0.232 5.232 21 C -0.459 4.459 22 H 0.070 0.930 23 C -0.216 4.216 24 N -0.577 5.577 25 Si 0.787 3.213 26 H -0.179 1.179 27 H -0.203 1.203 28 H -0.152 1.152 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.231 0.769 37 H 0.205 0.795 38 H 0.248 0.752 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.084 0.916 44 H 0.161 0.839 45 H 0.135 0.865 46 H 0.104 0.896 47 H 0.227 0.773 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.539 20.232 -4.281 27.773 hybrid contribution 0.540 -1.796 1.477 2.387 sum 19.079 18.436 -2.804 26.679 Atomic orbital electron populations 1.22104 0.92370 1.02222 1.04540 1.22216 0.96484 0.95476 0.83943 1.22030 1.01244 0.92658 1.04533 1.46179 1.36985 1.15587 1.05936 1.73094 1.22350 1.27026 0.90186 1.24161 1.00473 0.92887 1.01216 1.22660 1.05528 1.02883 0.89792 1.21620 1.07575 0.93821 0.96431 1.17025 0.76928 0.81568 0.86447 1.90690 1.57055 1.71164 1.26268 1.45631 1.58540 1.18714 1.11783 1.21135 0.96338 0.90315 0.88071 0.91049 1.22077 0.94449 1.01145 1.03402 1.22393 0.88899 0.93254 1.02659 1.59977 1.27347 1.02476 1.42898 1.21657 0.91887 0.90802 1.02590 1.21118 0.91974 0.82021 0.81541 1.90561 1.48139 1.53038 1.58462 1.42020 1.10632 1.09523 1.61022 1.18988 0.88294 0.95595 1.42975 0.93008 1.26170 1.00315 0.99298 0.95811 1.69816 1.23654 1.19399 1.44814 0.85330 0.78073 0.77290 0.80588 1.17932 1.20268 1.15184 0.94010 0.87871 0.91391 0.86113 0.91299 0.92733 0.88039 0.76900 0.79475 0.75179 0.89431 0.93643 0.90501 0.87597 0.91577 0.83894 0.86535 0.89600 0.77345 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.45 71.98 0.68 -2.48 16 2 C 0.12 2.64 3.56 44.99 0.16 2.80 16 3 C -0.15 -2.48 9.30 71.98 0.67 -1.81 16 4 N -0.26 -6.52 3.09 -314.29 -0.97 -7.49 16 5 N -0.29 -7.23 11.52 -57.14 -0.66 -7.89 16 6 C -0.01 -0.25 12.03 85.18 1.02 0.78 16 7 C -0.18 -3.50 10.50 22.66 0.24 -3.26 16 8 C -0.07 -1.64 6.96 40.79 0.28 -1.36 16 9 C 0.59 15.31 7.76 86.59 0.67 15.98 16 10 O -0.57 -17.83 14.02 -4.11 -0.06 -17.89 16 11 N -0.70 -13.61 4.33 -446.07 -1.93 -15.54 16 12 C 0.15 2.66 2.92 44.99 0.13 2.79 16 13 H 0.07 1.78 7.51 -2.39 -0.02 1.76 16 14 C -0.15 -2.02 9.48 71.98 0.68 -1.34 16 15 C 0.06 0.91 5.30 86.30 0.46 1.37 16 16 N -0.69 -18.40 6.12 -517.93 -3.17 -21.57 16 17 C 0.06 1.71 6.17 85.56 0.53 2.24 16 18 C 0.45 19.52 7.82 87.66 0.69 20.21 16 19 O -0.62 -34.18 15.78 -3.05 -0.05 -34.23 16 20 N -0.59 -27.13 5.09 -306.99 -1.56 -28.70 16 21 C -0.33 -19.20 10.16 84.04 0.85 -18.35 16 22 H 0.05 3.64 7.39 -2.91 -0.02 3.61 16 23 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 24 N -0.94 -56.47 13.96 21.66 0.30 -56.16 16 25 Si 0.97 37.95 27.74 68.60 1.90 39.85 16 26 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 27 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.12 3.07 5.32 -2.39 -0.01 3.06 16 33 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.19 2.30 7.62 -2.91 -0.02 2.28 16 38 H 0.41 6.19 7.23 -92.71 -0.67 5.52 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.34 9.86 7.28 -89.69 -0.65 9.20 16 45 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.39 14.56 5.76 -92.71 -0.53 14.03 16 48 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -85.88 399.55 0.42 -85.46 By element: Atomic # 1 Polarization: 48.01 SS G_CDS: -0.92 Total: 47.10 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 7.53 Total: 17.07 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -7.99 Total: -137.36 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -0.11 Total: -52.12 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 1.90 Total: 39.85 kcal Total: -85.88 0.42 -85.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716438755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.630 kcal (2) G-P(sol) polarization free energy of solvation -85.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds