Wall clock time and date at job start Tue Mar 31 2020 20:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 120.00166 * 2 1 3 5 5 N 1.46891 * 109.47376 * 175.00077 * 4 2 1 6 6 C 1.46900 * 111.00256 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47208 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00279 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99844 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99723 * 179.97438 * 9 7 6 11 11 H 1.07995 * 119.99992 * 359.97438 * 10 9 7 12 12 C 1.38950 * 119.99662 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00322 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99793 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47331 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46787 * 120.00064 * 14 12 10 17 17 H 1.48504 * 109.47550 * 239.99975 * 14 12 10 18 18 N 1.46496 * 109.46844 * 240.00459 * 2 1 3 19 19 C 1.34777 * 120.00266 * 85.00291 * 18 2 1 20 20 O 1.21274 * 120.00135 * 0.27234 * 19 18 2 21 21 C 1.50706 * 119.99766 * 179.97438 * 19 18 2 22 22 C 1.52999 * 109.46573 * 179.97438 * 21 19 18 23 23 C 1.50706 * 109.46953 * 179.97438 * 22 21 19 24 24 C 1.34668 * 126.59165 * 85.02168 * 23 22 21 25 25 N 1.34125 * 108.02059 * 179.97438 * 24 23 22 26 26 C 1.30493 * 109.25813 * 0.02562 * 25 24 23 27 27 N 1.35050 * 108.69794 * 359.77209 * 26 25 24 28 28 C 1.46503 * 126.39653 * 180.27127 * 27 26 25 29 29 H 1.09002 * 109.47121 * 299.99896 * 1 2 3 30 30 H 1.09001 * 109.47093 * 59.99684 * 1 2 3 31 31 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46999 * 295.00013 * 4 2 1 33 33 H 1.09007 * 109.46813 * 54.99824 * 4 2 1 34 34 H 1.00900 * 111.00057 * 303.95445 * 5 4 2 35 35 H 1.08998 * 109.47053 * 299.99511 * 6 5 4 36 36 H 1.08997 * 109.46982 * 59.99730 * 6 5 4 37 37 H 0.96997 * 119.99744 * 359.97438 * 9 7 6 38 38 H 0.96997 * 120.00412 * 179.97438 * 13 12 10 39 39 H 0.96999 * 119.99691 * 264.99277 * 18 2 1 40 40 H 1.09000 * 109.47161 * 299.99737 * 21 19 18 41 41 H 1.09001 * 109.46740 * 59.99879 * 21 19 18 42 42 H 1.09000 * 109.47486 * 299.99934 * 22 21 19 43 43 H 1.09001 * 109.47362 * 60.00657 * 22 21 19 44 44 H 1.08000 * 125.98772 * 359.97132 * 24 23 22 45 45 H 1.08000 * 125.65153 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.46504 * 270.11378 * 28 27 26 47 47 H 1.09002 * 109.47464 * 30.11004 * 28 27 26 48 48 H 1.08991 * 109.47047 * 150.11380 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1904 6 6 4.0302 -1.5159 2.3761 7 6 5.5316 -1.6044 2.2807 8 8 6.1067 -1.1394 1.3193 9 7 6.2354 -2.2001 3.2637 10 6 7.6012 -2.2810 3.1766 11 1 8.1131 -1.8677 2.3201 12 6 8.3268 -2.8947 4.1903 13 7 7.7039 -3.3981 5.2321 14 14 10.1877 -3.0056 4.0713 15 1 10.6419 -2.3684 2.8093 16 1 10.8003 -2.3039 5.2279 17 1 10.6005 -4.4321 4.0825 18 7 2.0182 -0.6905 -1.1962 19 6 2.1470 -0.0181 -2.3571 20 8 1.8634 1.1598 -2.4103 21 6 2.6498 -0.7284 -3.5875 22 6 2.7006 0.2546 -4.7588 23 6 3.2040 -0.4555 -5.9891 24 6 2.4686 -1.1745 -6.8584 25 7 3.2897 -1.6384 -7.8121 26 6 4.5061 -1.2347 -7.5665 27 7 4.4959 -0.4896 -6.4402 28 6 5.6519 0.1596 -5.8169 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7199 1.2951 34 1 3.7995 -1.2883 0.3433 35 1 3.7557 -0.9589 3.2719 36 1 3.6094 -2.5200 2.4293 37 1 5.7756 -2.5716 4.0327 38 1 8.2104 -3.8268 5.9396 39 1 2.2490 -1.6316 -1.1527 40 1 3.6492 -1.1202 -3.3979 41 1 1.9775 -1.5507 -3.8325 42 1 1.7011 0.6461 -4.9483 43 1 3.3727 1.0771 -4.5140 44 1 1.4042 -1.3473 -6.7981 45 1 5.3761 -1.4561 -8.1669 46 1 6.1118 -0.5245 -5.1037 47 1 6.3777 0.4252 -6.5854 48 1 5.3262 1.0609 -5.2977 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716462307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:49 Heat of formation + Delta-G solvation = -19.825878 kcal Electronic energy + Delta-G solvation = -28307.872992 eV Core-core repulsion = 24205.540816 eV Total energy + Delta-G solvation = -4102.332176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.32201 -40.01573 -38.37987 -36.87009 -34.50993 -34.30508 -33.80646 -33.68781 -31.37722 -31.17981 -28.92670 -27.65670 -27.23566 -25.21165 -24.74493 -23.29827 -21.67724 -21.39256 -20.52906 -19.99438 -19.31187 -17.97614 -17.62961 -17.00872 -16.48563 -16.10892 -15.93462 -15.76050 -15.38859 -14.86800 -14.56323 -14.51380 -14.21128 -13.98199 -13.77870 -13.65350 -13.38215 -13.27457 -13.14283 -13.10025 -12.85676 -12.62688 -12.41586 -12.29834 -11.99520 -11.78017 -11.66578 -11.52620 -11.43218 -11.13044 -11.02456 -10.39095 -10.27981 -10.17152 -9.97345 -9.80301 -9.57618 -9.21890 -8.56610 -8.53633 -8.15463 -8.01947 -6.47209 -3.88207 1.76683 2.52882 2.54462 2.91983 3.07867 3.11981 3.22961 3.29741 3.84142 3.99386 4.21917 4.32717 4.43694 4.50676 4.62807 4.71946 4.75556 4.81788 4.94821 4.95733 5.12455 5.12899 5.13644 5.18700 5.22724 5.30037 5.36510 5.38892 5.51944 5.57909 5.60807 5.71154 5.77373 5.88249 5.91853 6.03367 6.16570 6.19782 6.38212 6.51490 6.93615 7.08491 7.34547 7.50008 7.53293 7.84808 8.00585 8.11128 8.55178 9.12277 9.48279 9.99343 10.70514 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.002317 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.105696 B =12079.380674 C =14589.964727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.097 0.903 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.281 1.281 18 N -0.723 5.723 19 C 0.519 3.481 20 O -0.541 6.541 21 C -0.137 4.137 22 C -0.026 4.026 23 C -0.023 4.023 24 C -0.026 4.026 25 N -0.495 5.495 26 C 0.177 3.823 27 N -0.457 5.457 28 C 0.067 3.933 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.347 0.653 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.398 0.602 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.168 0.832 45 H 0.204 0.796 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.539 3.334 -15.945 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.116 0.884 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.542 5.542 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.207 1.207 18 N -0.375 5.375 19 C 0.306 3.694 20 O -0.418 6.418 21 C -0.177 4.177 22 C -0.065 4.065 23 C -0.137 4.137 24 C -0.175 4.175 25 N -0.213 5.213 26 C -0.105 4.105 27 N -0.140 5.140 28 C -0.076 4.076 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.167 0.833 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.232 0.768 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.185 0.815 45 H 0.220 0.780 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.260 4.620 -16.798 21.303 hybrid contribution 0.906 -1.345 1.198 2.016 sum -11.354 3.275 -15.600 19.570 Atomic orbital electron populations 1.22146 0.95035 1.02060 1.02754 1.21033 0.93412 0.98482 0.83162 0.88448 1.22311 0.88800 0.99000 0.97900 1.60021 1.07532 1.57482 1.04936 1.21696 0.95153 0.96963 0.94489 1.19792 0.88060 0.84309 0.85333 1.90519 1.71131 1.51578 1.33593 1.41874 1.07452 1.50771 1.19858 1.19741 0.81482 1.35113 1.06555 0.87892 1.25272 1.00742 0.96750 0.95195 1.69614 1.36664 1.38553 1.09390 0.85800 0.82175 0.77899 0.78469 1.19225 1.20693 1.20738 1.46043 1.67586 1.13954 1.09905 1.20540 0.77113 0.87264 0.84500 1.90700 1.50177 1.15822 1.85122 1.21669 1.03690 0.99731 0.92628 1.19720 1.02871 0.96047 0.87849 1.21267 0.84259 1.07245 1.00969 1.22071 0.99769 1.02066 0.93559 1.70270 1.00443 1.24129 1.26478 1.24934 0.98207 0.97492 0.89851 1.45360 1.07939 1.39172 1.21510 1.22127 0.86829 0.99047 0.99595 0.91409 0.91893 0.92557 0.89470 0.94983 0.83349 0.89443 0.93841 0.77447 0.91872 0.76834 0.88777 0.88441 0.88775 0.90333 0.81482 0.77953 0.89971 0.89283 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 2 C 0.14 1.52 2.88 -67.93 -0.20 1.32 16 3 H 0.10 1.29 7.57 -51.93 -0.39 0.89 16 4 C 0.05 0.54 5.30 -3.83 -0.02 0.52 16 5 N -0.67 -10.03 6.12 -115.06 -0.70 -10.74 16 6 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 7 C 0.44 10.07 7.82 -10.98 -0.09 9.99 16 8 O -0.58 -15.45 15.78 5.55 0.09 -15.37 16 9 N -0.56 -13.94 5.29 -10.96 -0.06 -13.99 16 10 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 11 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 14 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 N -0.72 -7.10 4.36 -53.81 -0.23 -7.33 16 19 C 0.52 5.71 7.79 -10.98 -0.09 5.62 16 20 O -0.54 -7.84 15.64 5.56 0.09 -7.75 16 21 C -0.14 -1.14 5.68 -27.88 -0.16 -1.30 16 22 C -0.03 -0.23 4.84 -27.88 -0.13 -0.36 16 23 C -0.02 -0.22 6.21 -81.60 -0.51 -0.72 16 24 C -0.03 -0.28 11.79 -17.81 -0.21 -0.49 16 25 N -0.50 -5.92 11.25 -14.67 -0.16 -6.08 16 26 C 0.18 1.65 12.56 -90.37 -1.14 0.52 16 27 N -0.46 -4.00 3.15 -121.37 -0.38 -4.38 16 28 C 0.07 0.39 11.00 59.85 0.66 1.05 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.35 5.30 7.28 -39.29 -0.29 5.01 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.40 3.18 8.15 -40.82 -0.33 2.85 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 43 H 0.08 0.74 7.04 -51.93 -0.37 0.38 16 44 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.09 0.52 7.11 -51.93 -0.37 0.15 16 LS Contribution 406.52 15.07 6.13 6.13 Total: -1.00 -35.60 406.52 -8.83 -44.43 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -7.50 Total: 14.78 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -1.79 Total: 8.04 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.82 Total: -65.92 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.17 Total: -23.12 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.60 -8.83 -44.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716462307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.607 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds