Wall clock time and date at job start Tue Mar 31 2020 20:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 120.00166 * 2 1 3 5 5 N 1.46891 * 109.47376 * 175.00077 * 4 2 1 6 6 C 1.46900 * 111.00256 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47208 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00279 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99844 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99723 * 179.97438 * 9 7 6 11 11 H 1.07995 * 119.99992 * 359.97438 * 10 9 7 12 12 C 1.38950 * 119.99662 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00322 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99793 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47331 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46787 * 120.00064 * 14 12 10 17 17 H 1.48504 * 109.47550 * 239.99975 * 14 12 10 18 18 N 1.46496 * 109.46844 * 240.00459 * 2 1 3 19 19 C 1.34777 * 120.00266 * 85.00291 * 18 2 1 20 20 O 1.21274 * 120.00135 * 0.27234 * 19 18 2 21 21 C 1.50706 * 119.99766 * 179.97438 * 19 18 2 22 22 C 1.52999 * 109.46573 * 179.97438 * 21 19 18 23 23 C 1.50706 * 109.46953 * 179.97438 * 22 21 19 24 24 C 1.34668 * 126.59165 * 85.02168 * 23 22 21 25 25 N 1.34125 * 108.02059 * 179.97438 * 24 23 22 26 26 C 1.30493 * 109.25813 * 0.02562 * 25 24 23 27 27 N 1.35050 * 108.69794 * 359.77209 * 26 25 24 28 28 C 1.46503 * 126.39653 * 180.27127 * 27 26 25 29 29 H 1.09002 * 109.47121 * 299.99896 * 1 2 3 30 30 H 1.09001 * 109.47093 * 59.99684 * 1 2 3 31 31 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46999 * 295.00013 * 4 2 1 33 33 H 1.09007 * 109.46813 * 54.99824 * 4 2 1 34 34 H 1.00900 * 111.00057 * 303.95445 * 5 4 2 35 35 H 1.08998 * 109.47053 * 299.99511 * 6 5 4 36 36 H 1.08997 * 109.46982 * 59.99730 * 6 5 4 37 37 H 0.96997 * 119.99744 * 359.97438 * 9 7 6 38 38 H 0.96997 * 120.00412 * 179.97438 * 13 12 10 39 39 H 0.96999 * 119.99691 * 264.99277 * 18 2 1 40 40 H 1.09000 * 109.47161 * 299.99737 * 21 19 18 41 41 H 1.09001 * 109.46740 * 59.99879 * 21 19 18 42 42 H 1.09000 * 109.47486 * 299.99934 * 22 21 19 43 43 H 1.09001 * 109.47362 * 60.00657 * 22 21 19 44 44 H 1.08000 * 125.98772 * 359.97132 * 24 23 22 45 45 H 1.08000 * 125.65153 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.46504 * 270.11378 * 28 27 26 47 47 H 1.09002 * 109.47464 * 30.11004 * 28 27 26 48 48 H 1.08991 * 109.47047 * 150.11380 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1904 6 6 4.0302 -1.5159 2.3761 7 6 5.5316 -1.6044 2.2807 8 8 6.1067 -1.1394 1.3193 9 7 6.2354 -2.2001 3.2637 10 6 7.6012 -2.2810 3.1766 11 1 8.1131 -1.8677 2.3201 12 6 8.3268 -2.8947 4.1903 13 7 7.7039 -3.3981 5.2321 14 14 10.1877 -3.0056 4.0713 15 1 10.6419 -2.3684 2.8093 16 1 10.8003 -2.3039 5.2279 17 1 10.6005 -4.4321 4.0825 18 7 2.0182 -0.6905 -1.1962 19 6 2.1470 -0.0181 -2.3571 20 8 1.8634 1.1598 -2.4103 21 6 2.6498 -0.7284 -3.5875 22 6 2.7006 0.2546 -4.7588 23 6 3.2040 -0.4555 -5.9891 24 6 2.4686 -1.1745 -6.8584 25 7 3.2897 -1.6384 -7.8121 26 6 4.5061 -1.2347 -7.5665 27 7 4.4959 -0.4896 -6.4402 28 6 5.6519 0.1596 -5.8169 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7199 1.2951 34 1 3.7995 -1.2883 0.3433 35 1 3.7557 -0.9589 3.2719 36 1 3.6094 -2.5200 2.4293 37 1 5.7756 -2.5716 4.0327 38 1 8.2104 -3.8268 5.9396 39 1 2.2490 -1.6316 -1.1527 40 1 3.6492 -1.1202 -3.3979 41 1 1.9775 -1.5507 -3.8325 42 1 1.7011 0.6461 -4.9483 43 1 3.3727 1.0771 -4.5140 44 1 1.4042 -1.3473 -6.7981 45 1 5.3761 -1.4561 -8.1669 46 1 6.1118 -0.5245 -5.1037 47 1 6.3777 0.4252 -6.5854 48 1 5.3262 1.0609 -5.2977 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716462307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:48 Heat of formation + Delta-G solvation = -45.775756 kcal Electronic energy + Delta-G solvation = -28308.998263 eV Core-core repulsion = 24205.540816 eV Total energy + Delta-G solvation = -4103.457447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.02828 -40.91923 -40.12707 -37.93625 -36.04004 -35.22342 -35.04727 -34.51877 -33.26354 -32.14736 -29.66711 -28.97160 -27.80534 -26.72413 -25.64916 -24.57876 -22.40146 -22.22138 -21.39527 -21.07580 -20.68612 -19.91605 -18.50301 -17.93618 -17.57858 -17.21463 -16.89532 -16.66719 -16.51439 -16.32681 -16.02204 -15.52074 -15.43735 -15.11817 -15.00938 -14.54663 -14.32431 -14.18659 -14.07447 -13.86762 -13.73189 -13.54258 -13.42754 -13.23272 -13.08185 -13.02943 -12.99322 -12.79997 -12.62509 -12.40894 -12.15276 -12.12103 -11.92440 -11.51985 -10.96669 -10.86115 -10.50706 -10.37075 -10.06290 -10.01967 -9.32919 -9.30096 -8.47524 -5.96023 1.06297 1.36033 1.41787 1.55422 1.67736 1.91190 2.04818 2.15959 2.27520 2.30150 2.89167 3.20145 3.49487 3.60019 3.86239 3.90488 3.94000 3.97239 4.02219 4.20846 4.21269 4.28140 4.38027 4.39374 4.47797 4.50172 4.59196 4.59670 4.67789 4.68883 4.70429 4.76268 4.81982 4.92241 5.06959 5.10902 5.29513 5.40599 5.46453 5.56286 5.79463 5.86420 6.08308 6.29375 6.38066 6.54928 6.59554 7.12263 7.12324 7.28067 7.56050 8.11151 8.69982 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.002317 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.105696 B =12079.380674 C =14589.964727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.066 0.934 4 C 0.056 3.944 5 N -0.686 5.686 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.332 4.332 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.273 1.273 16 H -0.272 1.272 17 H -0.270 1.270 18 N -0.717 5.717 19 C 0.516 3.484 20 O -0.581 6.581 21 C -0.126 4.126 22 C -0.018 4.018 23 C -0.026 4.026 24 C -0.045 4.045 25 N -0.535 5.535 26 C 0.177 3.823 27 N -0.459 5.459 28 C 0.062 3.938 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.343 0.657 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.409 0.591 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.177 0.823 45 H 0.235 0.765 46 H 0.084 0.916 47 H 0.113 0.887 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 2.404 -15.518 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.073 4.073 5 N -0.319 5.319 6 C -0.068 4.068 7 C 0.224 3.776 8 O -0.511 6.511 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.096 0.904 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.198 1.198 17 H -0.196 1.196 18 N -0.368 5.368 19 C 0.304 3.696 20 O -0.461 6.461 21 C -0.166 4.166 22 C -0.057 4.057 23 C -0.142 4.142 24 C -0.192 4.192 25 N -0.253 5.253 26 C -0.105 4.105 27 N -0.141 5.141 28 C -0.079 4.079 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.245 0.755 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.195 0.805 45 H 0.251 0.749 46 H 0.102 0.898 47 H 0.132 0.868 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.536 3.665 -16.336 20.915 hybrid contribution 0.963 -1.020 1.044 1.749 sum -11.573 2.645 -15.292 19.359 Atomic orbital electron populations 1.22058 0.93228 1.03108 1.02667 1.20954 0.94680 0.96876 0.83378 0.91587 1.22363 0.86169 1.00538 0.98261 1.59993 1.10264 1.57521 1.04152 1.21553 0.90199 0.99141 0.95875 1.20928 0.90723 0.82132 0.83822 1.90489 1.72856 1.52736 1.34977 1.41944 1.06867 1.51592 1.20650 1.19674 0.83086 1.36764 1.06622 0.90395 1.26023 1.04824 0.95885 0.94557 1.69668 1.38191 1.38531 1.09690 0.84892 0.77016 0.78300 0.78269 1.19773 1.19760 1.19551 1.46017 1.66932 1.14441 1.09451 1.20966 0.76429 0.86839 0.85342 1.90684 1.52050 1.17587 1.85775 1.21617 1.04148 0.99758 0.91119 1.19614 1.02458 0.95788 0.87821 1.21319 0.84762 1.07114 1.00960 1.22350 1.00484 1.02604 0.93800 1.70246 1.01745 1.25701 1.27630 1.25560 0.98479 0.96573 0.89923 1.45556 1.08272 1.38921 1.21376 1.22322 0.86400 0.98782 1.00417 0.90183 0.93343 0.90848 0.88501 0.92351 0.83740 0.87719 0.90984 0.76925 0.91308 0.75539 0.88432 0.86400 0.89019 0.91267 0.80550 0.74936 0.89763 0.86823 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.48 71.98 0.68 -1.67 16 2 C 0.15 2.90 2.88 44.99 0.13 3.03 16 3 H 0.07 1.76 7.57 -2.39 -0.02 1.74 16 4 C 0.06 1.07 5.30 86.30 0.46 1.52 16 5 N -0.69 -19.50 6.12 -517.94 -3.17 -22.67 16 6 C 0.06 2.02 6.17 85.56 0.53 2.54 16 7 C 0.44 19.90 7.82 87.66 0.69 20.58 16 8 O -0.62 -33.49 15.78 -3.05 -0.05 -33.54 16 9 N -0.57 -28.48 5.29 -306.99 -1.62 -30.10 16 10 C -0.33 -18.44 9.68 84.04 0.81 -17.63 16 11 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 13 N -0.92 -48.61 13.05 21.66 0.28 -48.33 16 14 Si 0.99 42.06 29.55 68.60 2.03 44.09 16 15 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 18 N -0.72 -13.28 4.36 -442.55 -1.93 -15.20 16 19 C 0.52 11.21 7.79 87.66 0.68 11.89 16 20 O -0.58 -17.19 15.64 -3.01 -0.05 -17.23 16 21 C -0.13 -2.01 5.68 29.85 0.17 -1.84 16 22 C -0.02 -0.31 4.84 29.85 0.14 -0.17 16 23 C -0.03 -0.49 6.21 40.95 0.25 -0.24 16 24 C -0.04 -0.95 11.79 83.52 0.98 0.04 16 25 N -0.53 -12.61 11.25 -200.31 -2.25 -14.86 16 26 C 0.18 3.12 12.56 180.26 2.26 5.38 16 27 N -0.46 -7.65 3.15 -537.89 -1.70 -9.34 16 28 C 0.06 0.67 11.00 127.77 1.41 2.07 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.34 10.07 7.28 -89.69 -0.65 9.41 16 35 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.40 18.63 7.90 -92.71 -0.73 17.90 16 38 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 39 H 0.41 5.79 8.15 -92.71 -0.76 5.04 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.65 8.10 -2.39 -0.02 1.63 16 43 H 0.07 1.34 7.04 -2.39 -0.02 1.32 16 44 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 45 H 0.23 2.23 8.06 -2.91 -0.02 2.21 16 46 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.09 0.98 7.11 -2.39 -0.02 0.96 16 Total: -1.00 -78.30 406.52 0.07 -78.23 By element: Atomic # 1 Polarization: 44.82 SS G_CDS: -1.14 Total: 43.67 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 9.67 Total: 25.30 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -10.38 Total: -140.51 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.10 Total: -50.78 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -78.30 0.07 -78.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716462307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.451 kcal (2) G-P(sol) polarization free energy of solvation -78.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds