Wall clock time and date at job start Tue Mar 31 2020 20:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47081 * 2 1 4 4 C 1.35860 * 126.18500 * 270.04168 * 3 2 1 5 5 N 1.30149 * 109.03477 * 179.97438 * 4 3 2 6 6 C 1.35738 * 108.98791 * 359.97438 * 5 4 3 7 7 C 1.47326 * 126.22360 * 180.26285 * 6 5 4 8 8 O 1.21623 * 120.00342 * 179.69301 * 7 6 5 9 9 N 1.34779 * 119.99773 * 359.68783 * 7 6 5 10 10 C 1.46499 * 120.00216 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46609 * 35.00535 * 10 9 7 12 12 C 1.52999 * 109.47172 * 275.00302 * 10 9 7 13 13 C 1.52998 * 109.47249 * 155.00204 * 10 9 7 14 14 N 1.46904 * 109.47203 * 305.00242 * 13 10 9 15 15 C 1.46896 * 111.00258 * 293.95305 * 14 13 10 16 16 C 1.46897 * 111.00222 * 169.99837 * 14 13 10 17 17 C 1.50704 * 109.47554 * 190.00188 * 16 14 13 18 18 O 1.21295 * 119.99257 * 359.97438 * 17 16 14 19 19 N 1.34769 * 120.00322 * 180.02562 * 17 16 14 20 20 C 1.37089 * 120.00053 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00441 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00273 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00361 * 179.97438 * 22 20 19 24 24 Si 1.86809 * 119.99778 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46831 * 90.00332 * 24 22 20 26 26 H 1.48494 * 109.47044 * 210.00293 * 24 22 20 27 27 H 1.48497 * 109.46968 * 330.00381 * 24 22 20 28 28 C 1.35915 * 126.18079 * 90.00342 * 3 2 1 29 29 H 1.09001 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46935 * 299.99844 * 1 2 3 31 31 H 1.09001 * 109.47155 * 59.99676 * 1 2 3 32 32 H 1.09004 * 109.46935 * 240.00156 * 2 1 3 33 33 H 1.09001 * 109.47155 * 120.00324 * 2 1 3 34 34 H 1.08001 * 125.47862 * 359.96587 * 4 3 2 35 35 H 0.97007 * 119.99970 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.46731 * 179.97438 * 12 10 9 37 37 H 1.08994 * 109.47130 * 300.00022 * 12 10 9 38 38 H 1.08996 * 109.46888 * 59.99857 * 12 10 9 39 39 H 1.09005 * 109.47265 * 64.99820 * 13 10 9 40 40 H 1.08996 * 109.47528 * 185.00189 * 13 10 9 41 41 H 1.09008 * 109.46925 * 59.99759 * 15 14 13 42 42 H 1.08998 * 109.47539 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.47047 * 300.00352 * 15 14 13 44 44 H 1.09006 * 109.47253 * 310.00232 * 16 14 13 45 45 H 1.08999 * 109.47191 * 70.00071 * 16 14 13 46 46 H 0.97005 * 119.99755 * 359.97438 * 19 17 16 47 47 H 0.96995 * 120.00110 * 179.97438 * 23 22 20 48 48 H 1.07995 * 126.61223 * 0.05434 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2849 2.1377 -1.0965 5 7 2.6992 3.3102 -0.7128 6 6 2.7137 3.3513 0.6439 7 6 3.1136 4.4994 1.4760 8 8 3.0779 4.4135 2.6886 9 7 3.5191 5.6451 0.8933 10 6 3.9162 6.7871 1.7205 11 1 4.4102 6.4274 2.6232 12 6 2.6747 7.5942 2.1056 13 6 4.8791 7.6774 0.9325 14 7 6.0142 6.8733 0.4603 15 6 6.8249 6.3939 1.5875 16 6 6.8351 7.6307 -0.4939 17 6 7.8360 6.7072 -1.1393 18 8 7.8631 5.5336 -0.8340 19 7 8.7016 7.1855 -2.0549 20 6 9.6117 6.3453 -2.6424 21 1 9.6354 5.3002 -2.3712 22 6 10.5038 6.8383 -3.5868 23 7 11.3766 6.0330 -4.1495 24 14 10.4625 8.6459 -4.0564 25 1 11.3706 9.4100 -3.1639 26 1 10.9063 8.8016 -5.4649 27 1 9.0777 9.1628 -3.9137 28 6 2.2858 2.1376 1.0970 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1714 1.8174 -2.1217 35 1 3.5473 5.7138 -0.0740 36 1 2.9702 8.4435 2.7215 37 1 2.1808 7.9537 1.2030 38 1 1.9888 6.9599 2.6670 39 1 4.3583 8.1081 0.0773 40 1 5.2437 8.4776 1.5765 41 1 6.2085 5.7777 2.2422 42 1 7.6580 5.8011 1.2098 43 1 7.2094 7.2465 2.1471 44 1 6.1935 8.0643 -1.2611 45 1 7.3618 8.4270 0.0319 46 1 8.6801 8.1241 -2.2988 47 1 11.9990 6.3771 -4.8090 48 1 2.1801 1.8361 2.1287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716500782.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:44 Heat of formation + Delta-G solvation = 2.306148 kcal Electronic energy + Delta-G solvation = -29180.490558 eV Core-core repulsion = 25079.118099 eV Total energy + Delta-G solvation = -4101.372459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.21926 -39.48617 -38.59070 -36.91709 -35.26154 -34.60439 -33.74082 -31.61882 -31.24339 -30.46849 -29.46178 -28.10483 -26.85956 -24.83649 -24.45758 -23.41896 -22.28733 -21.12502 -20.44184 -19.93866 -19.27342 -18.20830 -17.98049 -16.43037 -16.23035 -15.96896 -15.62443 -15.23126 -15.03782 -14.85267 -14.73028 -14.39230 -14.14355 -14.01062 -13.89430 -13.64666 -13.39386 -13.17074 -13.02578 -12.80220 -12.59367 -12.37868 -12.33719 -12.04629 -11.89970 -11.87218 -11.70070 -11.38249 -11.27972 -10.95875 -10.66335 -10.55507 -10.30778 -9.92720 -9.90227 -9.85771 -9.47910 -8.90760 -8.60541 -8.48483 -8.12226 -7.87319 -6.26064 -3.76910 1.56714 2.41703 2.41707 3.06309 3.10044 3.18097 3.42842 3.72328 3.81601 3.98612 4.14689 4.18136 4.39938 4.44855 4.55612 4.73393 4.82163 4.85841 5.03462 5.12582 5.13621 5.18856 5.24995 5.32269 5.41881 5.47035 5.52151 5.54207 5.67450 5.68963 5.72427 5.91621 5.94221 5.96206 6.00824 6.04900 6.16306 6.36810 6.61423 6.72278 6.88678 7.23988 7.37861 7.63472 7.64548 7.95029 8.20762 8.49773 8.66495 9.01407 9.48490 9.91017 10.87316 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011486 B = 0.002679 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.266138 B =10449.159956 C =12225.227463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 N -0.461 5.461 4 C 0.188 3.812 5 N -0.457 5.457 6 C -0.055 4.055 7 C 0.607 3.393 8 O -0.559 6.559 9 N -0.690 5.690 10 C 0.147 3.853 11 H 0.088 0.912 12 C -0.161 4.161 13 C 0.043 3.957 14 N -0.513 5.513 15 C 0.021 3.979 16 C 0.043 3.957 17 C 0.455 3.545 18 O -0.555 6.555 19 N -0.594 5.594 20 C -0.301 4.301 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.884 5.884 24 Si 0.879 3.121 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.028 3.972 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.210 0.790 35 H 0.413 0.587 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.014 0.986 44 H 0.089 0.911 45 H 0.048 0.952 46 H 0.369 0.631 47 H 0.272 0.728 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.121 -3.884 8.909 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.144 5.144 4 C -0.096 4.096 5 N -0.175 5.175 6 C -0.184 4.184 7 C 0.393 3.607 8 O -0.438 6.438 9 N -0.339 5.339 10 C 0.042 3.958 11 H 0.106 0.894 12 C -0.220 4.220 13 C -0.085 4.085 14 N -0.237 5.237 15 C -0.127 4.127 16 C -0.089 4.089 17 C 0.240 3.760 18 O -0.436 6.436 19 N -0.234 5.234 20 C -0.430 4.430 21 H 0.137 0.863 22 C -0.163 4.163 23 N -0.524 5.524 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.110 4.110 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.226 0.774 35 H 0.249 0.751 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.113 0.887 43 H 0.033 0.967 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -22.919 -4.633 9.053 25.074 hybrid contribution 0.292 1.443 -0.226 1.489 sum -22.626 -3.191 8.827 24.496 Atomic orbital electron populations 1.22179 0.93910 1.03315 1.03421 1.21934 0.95701 0.79529 1.05157 1.45678 1.48851 1.13026 1.06859 1.25176 1.03335 0.87494 0.93593 1.70614 1.17059 1.19478 1.10390 1.20569 1.11695 0.95559 0.90592 1.16848 0.76374 0.81282 0.86184 1.90752 1.56303 1.83280 1.13493 1.45569 1.65308 1.11887 1.11175 1.20940 0.94176 0.86038 0.94681 0.89428 1.22151 0.98080 1.00060 1.01695 1.22498 0.92627 0.94317 0.99104 1.61530 1.09392 1.37445 1.15342 1.22568 0.98961 0.99171 0.91964 1.21908 0.95851 0.94881 0.96234 1.19653 0.83819 0.89124 0.83389 1.90544 1.72093 1.17080 1.63919 1.42210 1.32525 1.10332 1.38298 1.19416 1.09295 0.95175 1.19113 0.86339 1.25030 0.96246 0.98153 0.96834 1.69620 1.19887 1.35001 1.27923 0.86675 0.78455 0.85113 0.79164 1.19745 1.20254 1.19474 1.22648 1.03476 0.91855 0.93028 0.90390 0.91741 0.91618 0.88379 0.88757 0.77390 0.75067 0.91748 0.92339 0.91876 0.90248 0.93553 0.91934 0.88655 0.96728 0.89301 0.93430 0.79799 0.91710 0.79820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.24 37.16 0.38 -0.26 16 2 C 0.10 0.46 6.85 -4.05 -0.03 0.43 16 3 N -0.46 -4.12 2.74 -118.21 -0.32 -4.45 16 4 C 0.19 1.97 12.56 -89.92 -1.13 0.85 16 5 N -0.46 -6.55 10.99 -11.03 -0.12 -6.67 16 6 C -0.06 -0.80 6.98 -83.09 -0.58 -1.38 16 7 C 0.61 9.67 7.78 -12.56 -0.10 9.57 16 8 O -0.56 -9.91 16.54 5.26 0.09 -9.82 16 9 N -0.69 -10.02 4.80 -54.91 -0.26 -10.28 16 10 C 0.15 1.88 2.35 -67.93 -0.16 1.72 16 11 H 0.09 1.26 6.23 -51.93 -0.32 0.94 16 12 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 13 C 0.04 0.54 4.52 -3.82 -0.02 0.52 16 14 N -0.51 -8.43 4.22 -244.37 -1.03 -9.47 16 15 C 0.02 0.36 8.96 60.06 0.54 0.90 16 16 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 17 C 0.45 10.51 7.48 -10.99 -0.08 10.43 16 18 O -0.56 -15.12 13.91 5.54 0.08 -15.05 16 19 N -0.59 -14.36 5.09 -10.97 -0.06 -14.42 16 20 C -0.30 -8.63 10.16 -14.94 -0.15 -8.79 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -26.16 13.96 55.50 0.77 -25.38 16 24 Si 0.88 19.63 27.74 -169.99 -4.71 14.91 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 28 C 0.03 0.32 11.29 -16.39 -0.19 0.14 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.21 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.41 6.15 8.32 -40.82 -0.34 5.81 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.88 7.93 -51.93 -0.41 0.46 16 40 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 41 H 0.06 1.04 6.58 -51.92 -0.34 0.70 16 42 H 0.09 1.98 5.82 -51.93 -0.30 1.68 16 43 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 45 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 46 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 400.21 15.07 6.03 6.03 Total: -1.00 -37.21 400.21 -8.24 -45.45 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -7.42 Total: 14.63 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: -1.28 Total: 14.51 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -1.02 Total: -70.67 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: 0.16 Total: -24.87 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.21 -8.24 -45.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716500782.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.756 kcal (2) G-P(sol) polarization free energy of solvation -37.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds