Wall clock time and date at job start Tue Mar 31 2020 20:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47081 * 2 1 4 4 C 1.35860 * 126.18500 * 270.04168 * 3 2 1 5 5 N 1.30149 * 109.03477 * 179.97438 * 4 3 2 6 6 C 1.35738 * 108.98791 * 359.97438 * 5 4 3 7 7 C 1.47326 * 126.22360 * 180.26285 * 6 5 4 8 8 O 1.21623 * 120.00342 * 179.69301 * 7 6 5 9 9 N 1.34779 * 119.99773 * 359.68783 * 7 6 5 10 10 C 1.46499 * 120.00216 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46609 * 35.00535 * 10 9 7 12 12 C 1.52999 * 109.47172 * 275.00302 * 10 9 7 13 13 C 1.52998 * 109.47249 * 155.00204 * 10 9 7 14 14 N 1.46904 * 109.47203 * 305.00242 * 13 10 9 15 15 C 1.46896 * 111.00258 * 293.95305 * 14 13 10 16 16 C 1.46897 * 111.00222 * 169.99837 * 14 13 10 17 17 C 1.50704 * 109.47554 * 190.00188 * 16 14 13 18 18 O 1.21295 * 119.99257 * 359.97438 * 17 16 14 19 19 N 1.34769 * 120.00322 * 180.02562 * 17 16 14 20 20 C 1.37089 * 120.00053 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00441 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00273 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00361 * 179.97438 * 22 20 19 24 24 Si 1.86809 * 119.99778 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46831 * 90.00332 * 24 22 20 26 26 H 1.48494 * 109.47044 * 210.00293 * 24 22 20 27 27 H 1.48497 * 109.46968 * 330.00381 * 24 22 20 28 28 C 1.35915 * 126.18079 * 90.00342 * 3 2 1 29 29 H 1.09001 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46935 * 299.99844 * 1 2 3 31 31 H 1.09001 * 109.47155 * 59.99676 * 1 2 3 32 32 H 1.09004 * 109.46935 * 240.00156 * 2 1 3 33 33 H 1.09001 * 109.47155 * 120.00324 * 2 1 3 34 34 H 1.08001 * 125.47862 * 359.96587 * 4 3 2 35 35 H 0.97007 * 119.99970 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.46731 * 179.97438 * 12 10 9 37 37 H 1.08994 * 109.47130 * 300.00022 * 12 10 9 38 38 H 1.08996 * 109.46888 * 59.99857 * 12 10 9 39 39 H 1.09005 * 109.47265 * 64.99820 * 13 10 9 40 40 H 1.08996 * 109.47528 * 185.00189 * 13 10 9 41 41 H 1.09008 * 109.46925 * 59.99759 * 15 14 13 42 42 H 1.08998 * 109.47539 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.47047 * 300.00352 * 15 14 13 44 44 H 1.09006 * 109.47253 * 310.00232 * 16 14 13 45 45 H 1.08999 * 109.47191 * 70.00071 * 16 14 13 46 46 H 0.97005 * 119.99755 * 359.97438 * 19 17 16 47 47 H 0.96995 * 120.00110 * 179.97438 * 23 22 20 48 48 H 1.07995 * 126.61223 * 0.05434 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2849 2.1377 -1.0965 5 7 2.6992 3.3102 -0.7128 6 6 2.7137 3.3513 0.6439 7 6 3.1136 4.4994 1.4760 8 8 3.0779 4.4135 2.6886 9 7 3.5191 5.6451 0.8933 10 6 3.9162 6.7871 1.7205 11 1 4.4102 6.4274 2.6232 12 6 2.6747 7.5942 2.1056 13 6 4.8791 7.6774 0.9325 14 7 6.0142 6.8733 0.4603 15 6 6.8249 6.3939 1.5875 16 6 6.8351 7.6307 -0.4939 17 6 7.8360 6.7072 -1.1393 18 8 7.8631 5.5336 -0.8340 19 7 8.7016 7.1855 -2.0549 20 6 9.6117 6.3453 -2.6424 21 1 9.6354 5.3002 -2.3712 22 6 10.5038 6.8383 -3.5868 23 7 11.3766 6.0330 -4.1495 24 14 10.4625 8.6459 -4.0564 25 1 11.3706 9.4100 -3.1639 26 1 10.9063 8.8016 -5.4649 27 1 9.0777 9.1628 -3.9137 28 6 2.2858 2.1376 1.0970 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1714 1.8174 -2.1217 35 1 3.5473 5.7138 -0.0740 36 1 2.9702 8.4435 2.7215 37 1 2.1808 7.9537 1.2030 38 1 1.9888 6.9599 2.6670 39 1 4.3583 8.1081 0.0773 40 1 5.2437 8.4776 1.5765 41 1 6.2085 5.7777 2.2422 42 1 7.6580 5.8011 1.2098 43 1 7.2094 7.2465 2.1471 44 1 6.1935 8.0643 -1.2611 45 1 7.3618 8.4270 0.0319 46 1 8.6801 8.1241 -2.2988 47 1 11.9990 6.3771 -4.8090 48 1 2.1801 1.8361 2.1287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716500782.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:43 Heat of formation + Delta-G solvation = -26.674899 kcal Electronic energy + Delta-G solvation = -29181.747271 eV Core-core repulsion = 25079.118099 eV Total energy + Delta-G solvation = -4102.629172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.06762 -40.73482 -40.21864 -38.27511 -36.11491 -35.90867 -35.48931 -33.72445 -32.22029 -31.20458 -30.31693 -29.60849 -27.99402 -26.55987 -25.31826 -24.26867 -23.56978 -21.91376 -21.43804 -21.21427 -21.02221 -20.13573 -18.85001 -17.80736 -17.38570 -17.07328 -16.74174 -16.67853 -16.40252 -16.13416 -15.57448 -15.53903 -15.42322 -15.13261 -14.91652 -14.82084 -14.64484 -14.56429 -14.31173 -14.09337 -13.62103 -13.57534 -13.26206 -13.14967 -12.96896 -12.87887 -12.75683 -12.65806 -12.44726 -12.35821 -12.21463 -11.96398 -11.71069 -11.44098 -11.29522 -10.97632 -10.71276 -10.33898 -10.20140 -10.00699 -9.54355 -9.16685 -8.38860 -5.99177 0.61293 1.31607 1.37215 1.46066 1.49413 1.73066 2.00978 2.25086 2.39334 2.63730 2.65771 3.17643 3.27489 3.51105 3.77614 3.81344 3.90788 4.10616 4.10922 4.19922 4.22918 4.34717 4.41690 4.42079 4.45927 4.47565 4.55280 4.59140 4.70917 4.72422 4.80752 4.84273 4.84695 5.06331 5.14274 5.18075 5.22864 5.31396 5.48269 5.55915 5.63861 5.92302 6.03570 6.14555 6.20506 6.60492 6.63449 6.92363 6.94097 7.35127 7.43817 8.02904 8.79155 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011486 B = 0.002679 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.266138 B =10449.159956 C =12225.227463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.451 5.451 4 C 0.191 3.809 5 N -0.499 5.499 6 C -0.097 4.097 7 C 0.598 3.402 8 O -0.590 6.590 9 N -0.688 5.688 10 C 0.144 3.856 11 H 0.066 0.934 12 C -0.150 4.150 13 C 0.050 3.950 14 N -0.537 5.537 15 C 0.032 3.968 16 C 0.055 3.945 17 C 0.451 3.549 18 O -0.606 6.606 19 N -0.593 5.593 20 C -0.324 4.324 21 H 0.052 0.948 22 C -0.018 4.018 23 N -0.938 5.938 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.276 1.276 27 H -0.229 1.229 28 C 0.035 3.965 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.244 0.756 35 H 0.411 0.589 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.039 0.961 44 H 0.124 0.876 45 H 0.081 0.919 46 H 0.389 0.611 47 H 0.278 0.722 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.178 -1.106 8.424 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.133 5.133 4 C -0.093 4.093 5 N -0.218 5.218 6 C -0.225 4.225 7 C 0.385 3.615 8 O -0.472 6.472 9 N -0.336 5.336 10 C 0.039 3.961 11 H 0.084 0.916 12 C -0.209 4.209 13 C -0.078 4.078 14 N -0.261 5.261 15 C -0.116 4.116 16 C -0.075 4.075 17 C 0.239 3.761 18 O -0.489 6.489 19 N -0.236 5.236 20 C -0.454 4.454 21 H 0.070 0.930 22 C -0.216 4.216 23 N -0.579 5.579 24 Si 0.786 3.214 25 H -0.183 1.183 26 H -0.201 1.201 27 H -0.152 1.152 28 C -0.105 4.105 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.125 0.875 34 H 0.260 0.740 35 H 0.246 0.754 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.142 0.858 45 H 0.099 0.901 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -25.013 -1.849 8.575 26.507 hybrid contribution 0.896 0.345 -0.043 0.962 sum -24.117 -1.504 8.532 25.626 Atomic orbital electron populations 1.22145 0.93035 1.04461 1.02599 1.22329 0.96337 0.77215 1.06942 1.45936 1.47526 1.14208 1.05623 1.25849 1.01553 0.86716 0.95174 1.70523 1.19033 1.21824 1.10429 1.20630 1.14358 0.96424 0.91096 1.17180 0.76141 0.82056 0.86096 1.90708 1.57946 1.83923 1.14590 1.45648 1.64716 1.12167 1.11106 1.21079 0.95387 0.85882 0.93768 0.91587 1.22057 0.96477 0.99970 1.02403 1.22572 0.90786 0.94047 1.00388 1.61408 1.10113 1.39224 1.15350 1.22321 0.97568 0.99487 0.92233 1.21848 0.94991 0.93562 0.97138 1.20963 0.83689 0.89437 0.82007 1.90538 1.73325 1.20024 1.65054 1.42025 1.32187 1.10676 1.38683 1.18965 1.11944 0.93426 1.21027 0.93002 1.26132 0.94749 1.04944 0.95770 1.69810 1.20942 1.38382 1.28720 0.85349 0.80861 0.76562 0.78641 1.18252 1.20097 1.15233 1.22880 1.02094 0.91313 0.94258 0.88227 0.92955 0.92022 0.86147 0.87511 0.74017 0.75368 0.89403 0.91011 0.93670 0.87924 0.90832 0.92445 0.93178 0.94286 0.85804 0.90096 0.77520 0.91235 0.78496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 10.24 71.98 0.74 -0.20 16 2 C 0.09 0.67 6.85 86.38 0.59 1.26 16 3 N -0.45 -7.68 2.74 -527.91 -1.45 -9.12 16 4 C 0.19 3.90 12.56 180.10 2.26 6.16 16 5 N -0.50 -14.62 10.99 -188.82 -2.08 -16.70 16 6 C -0.10 -2.95 6.98 40.51 0.28 -2.66 16 7 C 0.60 19.94 7.78 86.63 0.67 20.61 16 8 O -0.59 -21.97 16.54 -4.10 -0.07 -22.03 16 9 N -0.69 -20.27 4.80 -445.89 -2.14 -22.41 16 10 C 0.14 3.52 2.35 44.99 0.11 3.62 16 11 H 0.07 1.91 6.23 -2.38 -0.01 1.90 16 12 C -0.15 -2.83 9.48 71.98 0.68 -2.15 16 13 C 0.05 1.07 4.52 86.30 0.39 1.46 16 14 N -0.54 -16.76 4.22 -927.04 -3.92 -20.68 16 15 C 0.03 1.10 8.96 127.69 1.14 2.24 16 16 C 0.06 1.72 5.45 85.56 0.47 2.19 16 17 C 0.45 20.88 7.48 87.66 0.66 21.53 16 18 O -0.61 -34.69 13.91 -3.08 -0.04 -34.73 16 19 N -0.59 -28.46 5.09 -306.99 -1.56 -30.02 16 20 C -0.32 -19.36 10.16 84.04 0.85 -18.51 16 21 H 0.05 3.71 7.39 -2.91 -0.02 3.68 16 22 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 23 N -0.94 -57.46 13.96 21.66 0.30 -57.16 16 24 Si 0.97 39.24 27.74 68.60 1.90 41.14 16 25 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 26 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 28 C 0.04 0.82 11.29 83.64 0.94 1.76 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.12 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.24 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.41 12.37 8.32 -92.70 -0.77 11.60 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.79 7.93 -2.38 -0.02 1.77 16 40 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 41 H 0.06 1.98 6.58 -2.38 -0.02 1.96 16 42 H 0.05 2.17 5.82 -2.39 -0.01 2.16 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.12 3.06 7.93 -2.38 -0.02 3.04 16 45 H 0.08 2.05 8.12 -2.39 -0.02 2.03 16 46 H 0.39 15.35 5.76 -92.70 -0.53 14.81 16 47 H 0.28 15.57 8.31 -92.71 -0.77 14.79 16 48 H 0.20 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -90.58 400.21 0.83 -89.75 By element: Atomic # 1 Polarization: 45.57 SS G_CDS: -0.38 Total: 45.19 kcal Atomic # 6 Polarization: 26.53 SS G_CDS: 10.26 Total: 36.78 kcal Atomic # 7 Polarization: -145.25 SS G_CDS: -10.84 Total: -156.09 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -0.11 Total: -56.77 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.90 Total: 41.14 kcal Total: -90.58 0.83 -89.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716500782.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.072 kcal (2) G-P(sol) polarization free energy of solvation -90.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds