Wall clock time and date at job start Tue Mar 31 2020 20:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47172 * 2 1 4 4 C 1.35847 * 126.13645 * 270.00019 * 3 2 1 5 5 N 1.30174 * 109.00221 * 179.76245 * 4 3 2 6 6 C 1.35753 * 108.86676 * 0.38771 * 5 4 3 7 7 C 1.47326 * 126.23443 * 179.88299 * 6 5 4 8 8 O 1.21617 * 119.99746 * 179.68462 * 7 6 5 9 9 N 1.34773 * 119.99924 * 359.68867 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46722 * 324.72200 * 10 9 7 12 12 C 1.52995 * 109.47182 * 84.72073 * 10 9 7 13 13 C 1.52999 * 109.47091 * 204.72183 * 10 9 7 14 14 N 1.46904 * 109.47036 * 54.99671 * 13 10 9 15 15 C 1.46902 * 110.99964 * 66.04985 * 14 13 10 16 16 C 1.46905 * 111.00009 * 189.99892 * 14 13 10 17 17 C 1.50690 * 109.46998 * 170.00090 * 16 14 13 18 18 O 1.21290 * 120.00463 * 0.02562 * 17 16 14 19 19 N 1.34781 * 119.99614 * 179.97438 * 17 16 14 20 20 C 1.37107 * 119.99886 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99372 * 0.02562 * 20 19 17 22 22 C 1.38941 * 119.99839 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00363 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99755 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47223 * 90.00048 * 24 22 20 26 26 H 1.48502 * 109.47159 * 210.00166 * 24 22 20 27 27 H 1.48500 * 109.47089 * 329.99899 * 24 22 20 28 28 C 1.35373 * 126.13376 * 90.00589 * 3 2 1 29 29 H 1.08996 * 109.47196 * 59.99501 * 1 2 3 30 30 H 1.08999 * 109.47511 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46996 * 299.99735 * 1 2 3 32 32 H 1.09007 * 109.46996 * 240.00265 * 2 1 3 33 33 H 1.08996 * 109.47196 * 120.00498 * 2 1 3 34 34 H 1.08007 * 125.50094 * 0.02562 * 4 3 2 35 35 H 0.97005 * 120.00161 * 359.72150 * 9 7 6 36 36 H 1.09007 * 109.47360 * 299.99766 * 12 10 9 37 37 H 1.08997 * 109.47379 * 60.00113 * 12 10 9 38 38 H 1.09002 * 109.47097 * 180.02562 * 12 10 9 39 39 H 1.08997 * 109.46838 * 174.99642 * 13 10 9 40 40 H 1.08991 * 109.47160 * 294.99750 * 13 10 9 41 41 H 1.09003 * 109.47227 * 59.99360 * 15 14 13 42 42 H 1.08994 * 109.47231 * 180.02562 * 15 14 13 43 43 H 1.09004 * 109.46738 * 299.99711 * 15 14 13 44 44 H 1.09008 * 109.46973 * 290.00417 * 16 14 13 45 45 H 1.08994 * 109.46691 * 49.99980 * 16 14 13 46 46 H 0.96991 * 120.00234 * 0.02562 * 19 17 16 47 47 H 0.97002 * 120.00382 * 180.02562 * 23 22 20 48 48 H 1.08005 * 126.56664 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2854 2.1365 -1.0971 5 7 2.6952 3.3110 -0.7136 6 6 2.7138 3.3480 0.6433 7 6 3.1179 4.4929 1.4778 8 8 3.0854 4.4031 2.6902 9 7 3.5234 5.6398 0.8976 10 6 3.9258 6.7781 1.7274 11 1 3.3075 6.8102 2.6245 12 6 5.3950 6.6248 2.1258 13 6 3.7445 8.0752 0.9364 14 7 2.3606 8.1637 0.4516 15 6 1.4188 8.3023 1.5704 16 6 2.2076 9.2680 -0.5052 17 6 0.8546 9.1791 -1.1625 18 8 0.0924 8.2844 -0.8632 19 7 0.4909 10.0947 -2.0824 20 6 -0.7404 10.0142 -2.6801 21 1 -1.4189 9.2174 -2.4135 22 6 -1.1150 10.9577 -3.6287 23 7 -0.2891 11.9269 -3.9535 24 14 -2.7929 10.8485 -4.4426 25 1 -3.7803 11.6209 -3.6468 26 1 -2.7149 11.4104 -5.8150 27 1 -3.2173 9.4271 -4.5132 28 6 2.2845 2.1338 1.0933 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.1716 1.8158 -2.1222 35 1 3.5531 5.7100 -0.0695 36 1 5.5241 5.7007 2.6894 37 1 6.0133 6.5926 1.2288 38 1 5.6942 7.4715 2.7436 39 1 3.9588 8.9271 1.5816 40 1 4.4280 8.0814 0.0874 41 1 1.6514 9.2076 2.1312 42 1 0.4018 8.3653 1.1834 43 1 1.5044 7.4362 2.2267 44 1 2.2945 10.2189 0.0206 45 1 2.9860 9.2006 -1.2652 46 1 1.1002 10.8105 -2.3215 47 1 -0.5509 12.5858 -4.6155 48 1 2.1772 1.8310 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716500783.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:45 Heat of formation + Delta-G solvation = -31.027389 kcal Electronic energy + Delta-G solvation = -29192.718388 eV Core-core repulsion = 25089.900478 eV Total energy + Delta-G solvation = -4102.817910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.10959 -40.69224 -40.13266 -38.23910 -36.08646 -35.91322 -35.46124 -33.25040 -32.21354 -31.22967 -30.30388 -29.47376 -27.99372 -26.65640 -25.33914 -24.29088 -23.63657 -21.90980 -21.44531 -21.02178 -20.94078 -19.82730 -18.85489 -17.81708 -17.39143 -16.99785 -16.70010 -16.53046 -16.49689 -16.17438 -15.65120 -15.50111 -15.43654 -15.06882 -15.00959 -14.92383 -14.63282 -14.57249 -14.11907 -13.64587 -13.58388 -13.44860 -13.28928 -13.10854 -12.97371 -12.87333 -12.76045 -12.65195 -12.44175 -12.37240 -12.22210 -12.11791 -11.71704 -11.44141 -11.28884 -10.96930 -10.72509 -10.25555 -10.00209 -9.97063 -9.53286 -9.16735 -8.44472 -5.92601 0.62692 1.38130 1.41210 1.49631 1.54149 1.75311 2.09729 2.29151 2.40545 2.64332 2.79055 3.22557 3.44391 3.52532 3.78255 3.81427 3.91045 4.10212 4.16259 4.22055 4.24113 4.35843 4.41389 4.43593 4.47311 4.54486 4.55997 4.59599 4.70629 4.71794 4.79857 4.82871 4.83876 5.05503 5.14879 5.17330 5.22625 5.30718 5.42729 5.49284 5.63606 5.90194 6.08631 6.15268 6.22049 6.61148 6.64406 6.94724 7.16271 7.35464 7.60322 8.17452 8.73134 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.002859 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.959555 B = 9790.022378 C =12109.216756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.449 5.449 4 C 0.189 3.811 5 N -0.499 5.499 6 C -0.099 4.099 7 C 0.598 3.402 8 O -0.590 6.590 9 N -0.688 5.688 10 C 0.146 3.854 11 H 0.067 0.933 12 C -0.151 4.151 13 C 0.048 3.952 14 N -0.532 5.532 15 C 0.033 3.967 16 C 0.059 3.941 17 C 0.442 3.558 18 O -0.615 6.615 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.075 0.925 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.274 1.274 28 C 0.037 3.963 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.244 0.756 35 H 0.410 0.590 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.034 0.966 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.114 0.886 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.911 -20.223 7.564 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 N -0.130 5.130 4 C -0.095 4.095 5 N -0.217 5.217 6 C -0.227 4.227 7 C 0.386 3.614 8 O -0.472 6.472 9 N -0.336 5.336 10 C 0.041 3.959 11 H 0.085 0.915 12 C -0.209 4.209 13 C -0.079 4.079 14 N -0.257 5.257 15 C -0.115 4.115 16 C -0.072 4.072 17 C 0.230 3.770 18 O -0.501 6.501 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.093 0.907 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.104 4.104 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.260 0.740 35 H 0.246 0.754 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.132 0.868 46 H 0.230 0.770 47 H 0.086 0.914 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 10.445 -20.595 7.701 24.342 hybrid contribution -0.882 0.744 -0.081 1.157 sum 9.562 -19.851 7.619 23.314 Atomic orbital electron populations 1.22183 0.93952 1.04424 1.02255 1.22331 0.95635 0.77181 1.07350 1.45797 1.47260 1.14341 1.05613 1.25865 1.01856 0.86587 0.95183 1.70567 1.19697 1.21060 1.10424 1.20623 1.14847 0.96177 0.91080 1.17187 0.75856 0.82280 0.86127 1.90705 1.57965 1.83896 1.14599 1.45649 1.65090 1.11832 1.11078 1.21052 0.96641 0.84619 0.93626 0.91493 1.22059 0.93883 1.02640 1.02334 1.22568 0.88879 0.96354 1.00123 1.61447 1.05105 1.43816 1.15283 1.22315 0.97353 0.99523 0.92288 1.21750 0.94936 0.93838 0.96698 1.20826 0.90263 0.83249 0.82711 1.90482 1.55957 1.37351 1.66260 1.41923 1.16337 1.26555 1.36541 1.19614 0.93892 1.12275 1.20173 0.90652 1.25993 1.03006 0.94854 0.97403 1.69670 1.37657 1.15176 1.33760 0.84964 0.77456 0.78378 0.77752 1.19728 1.19405 1.19925 1.22752 1.01847 0.91447 0.94357 0.92627 0.87973 0.93434 0.85555 0.86945 0.73975 0.75416 0.93451 0.91093 0.89496 0.91176 0.88281 0.94726 0.92912 0.92284 0.91248 0.86806 0.77022 0.91355 0.78464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 71.98 0.74 -0.63 16 2 C 0.09 0.63 6.84 86.38 0.59 1.22 16 3 N -0.45 -7.45 2.72 -528.38 -1.44 -8.89 16 4 C 0.19 3.81 12.55 180.10 2.26 6.07 16 5 N -0.50 -14.67 11.01 -188.81 -2.08 -16.74 16 6 C -0.10 -3.02 6.98 40.51 0.28 -2.73 16 7 C 0.60 20.21 7.77 86.63 0.67 20.88 16 8 O -0.59 -22.15 16.55 -4.09 -0.07 -22.22 16 9 N -0.69 -20.99 4.80 -445.89 -2.14 -23.13 16 10 C 0.15 3.78 2.35 44.99 0.11 3.89 16 11 H 0.07 2.02 6.24 -2.38 -0.01 2.01 16 12 C -0.15 -3.04 9.48 71.98 0.68 -2.36 16 13 C 0.05 1.17 4.52 86.30 0.39 1.56 16 14 N -0.53 -17.93 4.22 -927.06 -3.92 -21.84 16 15 C 0.03 1.20 8.96 127.69 1.14 2.34 16 16 C 0.06 2.07 5.45 85.55 0.47 2.53 16 17 C 0.44 21.65 7.47 87.65 0.66 22.30 16 18 O -0.61 -35.29 13.91 -3.06 -0.04 -35.33 16 19 N -0.58 -30.18 5.29 -306.99 -1.62 -31.80 16 20 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 23 N -0.92 -50.42 13.05 21.66 0.28 -50.13 16 24 Si 0.99 43.79 29.55 68.60 2.03 45.82 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 28 C 0.04 0.85 11.26 83.72 0.94 1.80 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.13 0.17 8.14 -2.38 -0.02 0.15 16 33 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.24 2.75 8.06 -2.91 -0.02 2.72 16 35 H 0.41 12.87 8.32 -92.70 -0.77 12.10 16 36 H 0.05 1.11 8.14 -2.38 -0.02 1.10 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 1.41 8.12 -2.39 -0.02 1.40 16 40 H 0.10 2.05 7.93 -2.39 -0.02 2.03 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.05 2.34 5.82 -2.39 -0.01 2.33 16 43 H 0.06 2.10 6.58 -2.39 -0.02 2.08 16 44 H 0.07 2.16 8.12 -2.38 -0.02 2.14 16 45 H 0.11 3.44 7.93 -2.39 -0.02 3.42 16 46 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 47 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 48 H 0.20 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -82.03 403.29 0.70 -81.33 By element: Atomic # 1 Polarization: 45.18 SS G_CDS: -0.52 Total: 44.66 kcal Atomic # 6 Polarization: 28.07 SS G_CDS: 10.21 Total: 38.28 kcal Atomic # 7 Polarization: -141.63 SS G_CDS: -10.91 Total: -152.54 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -0.11 Total: -57.55 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -82.03 0.70 -81.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716500783.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.307 kcal (2) G-P(sol) polarization free energy of solvation -82.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds