Wall clock time and date at job start Tue Mar 31 2020 20:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46929 * 2 1 4 4 C 1.34257 * 125.75897 * 125.00224 * 3 2 1 5 5 C 1.38037 * 107.42081 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41684 * 180.02562 * 5 4 3 7 7 O 1.21599 * 119.99971 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00065 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00015 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.47299 * 35.00074 * 9 8 6 11 11 C 1.53002 * 109.47312 * 275.00110 * 9 8 6 12 12 C 1.53001 * 109.47412 * 154.99938 * 9 8 6 13 13 H 1.09002 * 109.46725 * 295.00098 * 12 9 8 14 14 C 1.52998 * 109.47050 * 54.99837 * 12 9 8 15 15 N 1.46902 * 109.47364 * 175.00166 * 12 9 8 16 16 C 1.46901 * 110.99573 * 154.99859 * 15 12 9 17 17 C 1.50709 * 109.46415 * 179.97438 * 16 15 12 18 18 O 1.21287 * 120.00368 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99235 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99421 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00170 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99990 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00129 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00003 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47182 * 89.99970 * 24 22 20 26 26 H 1.48501 * 109.47237 * 210.00370 * 24 22 20 27 27 H 1.48497 * 109.46859 * 329.99974 * 24 22 20 28 28 C 1.41295 * 107.17157 * 359.97438 * 5 4 3 29 29 N 1.30444 * 108.01985 * 0.02562 * 28 5 4 30 30 H 1.09005 * 109.46903 * 60.00636 * 1 2 3 31 31 H 1.08997 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47160 * 300.00407 * 1 2 3 33 33 H 1.09000 * 109.47160 * 239.99593 * 2 1 3 34 34 H 1.09005 * 109.46903 * 119.99364 * 2 1 3 35 35 H 1.08002 * 126.28642 * 359.97438 * 4 3 2 36 36 H 0.96996 * 120.00521 * 359.97438 * 8 6 5 37 37 H 1.08999 * 109.46988 * 59.99886 * 11 9 8 38 38 H 1.09001 * 109.47212 * 180.02562 * 11 9 8 39 39 H 1.09000 * 109.46572 * 299.99524 * 11 9 8 40 40 H 1.08998 * 109.47184 * 300.00049 * 14 12 9 41 41 H 1.09000 * 109.47093 * 59.99973 * 14 12 9 42 42 H 1.09003 * 109.46972 * 180.02562 * 14 12 9 43 43 H 1.00901 * 110.99511 * 31.04945 * 15 12 9 44 44 H 1.08998 * 109.47124 * 299.99439 * 16 15 12 45 45 H 1.08998 * 109.47402 * 60.00276 * 16 15 12 46 46 H 0.96996 * 120.00739 * 0.02562 * 19 17 16 47 47 H 0.96998 * 120.00232 * 179.97438 * 23 22 20 48 48 H 1.08002 * 125.98990 * 179.73424 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8690 1.9127 0.8924 5 6 3.0713 3.2309 0.5363 6 6 3.9333 4.2032 1.2328 7 8 4.5509 3.8670 2.2249 8 7 4.0368 5.4647 0.7699 9 6 4.8930 6.4311 1.4623 10 1 5.7700 5.9202 1.8598 11 6 4.1123 7.0728 2.6112 12 6 5.3368 7.5158 0.4788 13 1 5.9675 7.0718 -0.2914 14 6 4.1054 8.1486 -0.1724 15 7 6.0954 8.5481 1.1979 16 6 7.0138 9.2524 0.2932 17 6 7.7723 10.3017 1.0646 18 8 7.5683 10.4479 2.2512 19 7 8.6781 11.0768 0.4359 20 6 9.3685 12.0309 1.1377 21 1 9.1863 12.1617 2.1941 22 6 10.3020 12.8305 0.4896 23 7 10.9635 13.7454 1.1621 24 14 10.6168 12.6048 -1.3378 25 1 9.6991 13.4804 -2.1100 26 1 12.0234 12.9673 -1.6464 27 1 10.3781 11.1871 -1.7098 28 6 2.2985 3.4736 -0.6214 29 7 1.6774 2.3690 -0.9308 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.3134 1.4024 1.7342 36 1 3.5445 5.7329 -0.0216 37 1 3.7962 6.3000 3.3118 38 1 4.7492 7.7921 3.1260 39 1 3.2354 7.5838 2.2136 40 1 3.5426 7.3826 -0.7059 41 1 3.4747 8.5925 0.5978 42 1 4.4217 8.9211 -0.8734 43 1 6.5927 8.1515 1.9811 44 1 7.7163 8.5396 -0.1386 45 1 6.4438 9.7294 -0.5042 46 1 8.8415 10.9596 -0.5130 47 1 11.6154 14.3032 0.7098 48 1 2.2300 4.4108 -1.1538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717402543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:07 Heat of formation + Delta-G solvation = 10.378401 kcal Electronic energy + Delta-G solvation = -28272.737064 eV Core-core repulsion = 24171.714644 eV Total energy + Delta-G solvation = -4101.022420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79339 -39.77965 -38.53360 -37.28821 -35.06346 -34.44143 -33.80459 -31.68912 -31.30725 -30.99035 -29.81500 -29.00187 -26.72499 -24.99226 -24.36224 -23.72962 -22.63431 -21.13352 -20.33040 -19.76465 -19.39572 -18.53615 -18.20400 -16.66650 -16.27785 -16.08458 -15.88096 -15.54551 -15.24748 -15.05121 -14.74621 -14.67950 -14.47680 -13.99697 -13.85894 -13.56659 -13.23569 -13.17379 -13.02217 -12.80275 -12.71247 -12.50870 -12.35233 -12.11554 -12.06921 -12.04944 -11.85434 -11.53361 -11.37688 -11.18756 -10.93898 -10.69065 -10.58371 -10.05486 -10.02079 -9.95884 -9.55583 -9.29791 -8.99718 -8.56938 -8.20075 -8.14764 -6.29414 -3.80788 1.16170 1.80011 1.84543 3.02677 3.03532 3.07904 3.16142 3.26540 3.76079 3.86288 4.10892 4.15893 4.28101 4.31582 4.39820 4.55128 4.58091 4.76621 4.78968 4.90495 4.96870 5.01728 5.14737 5.17973 5.23411 5.29807 5.44228 5.49532 5.54262 5.55971 5.68256 5.79249 5.83737 5.90008 5.93495 5.95077 6.02474 6.20735 6.35595 6.41938 6.46642 7.07268 7.09172 7.40007 7.54784 7.60026 8.13922 8.16441 8.61514 8.96859 9.44254 9.84578 10.83753 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029138 B = 0.001720 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.728766 B =16270.878792 C =16657.785733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.128 3.872 5 C -0.293 4.293 6 C 0.595 3.405 7 O -0.549 6.549 8 N -0.719 5.719 9 C 0.144 3.856 10 H 0.087 0.913 11 C -0.158 4.158 12 C 0.076 3.924 13 H 0.048 0.952 14 C -0.144 4.144 15 N -0.656 5.656 16 C 0.048 3.952 17 C 0.451 3.549 18 O -0.563 6.563 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.080 3.920 29 N -0.295 5.295 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.188 0.812 36 H 0.397 0.603 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.353 0.647 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.490 -27.354 -7.720 35.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.140 5.140 4 C -0.023 4.023 5 C -0.308 4.308 6 C 0.383 3.617 7 O -0.428 6.428 8 N -0.372 5.372 9 C 0.039 3.961 10 H 0.105 0.895 11 C -0.216 4.216 12 C -0.035 4.035 13 H 0.065 0.935 14 C -0.202 4.202 15 N -0.290 5.290 16 C -0.085 4.085 17 C 0.236 3.764 18 O -0.445 6.445 19 N -0.231 5.231 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.108 4.108 29 N -0.114 5.114 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.205 0.795 36 H 0.233 0.767 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.174 0.826 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -21.371 -27.561 -7.067 35.585 hybrid contribution 1.451 -0.145 -1.538 2.119 sum -19.921 -27.706 -8.605 35.192 Atomic orbital electron populations 1.22063 0.93298 1.03215 1.03826 1.21857 0.96520 0.76778 1.04383 1.48666 1.34280 1.10660 1.20423 1.23010 0.91435 0.93603 0.94302 1.20275 1.11685 0.95496 1.03384 1.17215 0.80183 0.81169 0.83155 1.90784 1.46847 1.78908 1.26215 1.45905 1.48977 1.10480 1.31843 1.21051 0.94076 0.88329 0.92624 0.89461 1.22130 1.01041 1.00775 0.97623 1.21728 0.96023 0.90862 0.94855 0.93455 1.21887 0.97228 1.00271 1.00826 1.60182 1.30119 1.28594 1.10141 1.21771 0.94564 0.96390 0.95775 1.19691 0.83259 0.85016 0.88416 1.90570 1.67357 1.71163 1.15387 1.42203 1.36994 1.33673 1.10195 1.19440 1.17026 1.09909 0.96981 0.86260 1.25033 0.96574 0.96170 0.98359 1.69621 1.25430 1.20876 1.36237 0.86672 0.78948 0.78461 0.85294 1.19624 1.20222 1.19547 1.24067 0.94159 0.97479 0.95055 1.77142 1.23759 0.97112 1.13425 0.90895 0.90375 0.91893 0.89202 0.88135 0.79512 0.76661 0.92775 0.90030 0.92177 0.93213 0.91036 0.92133 0.82627 0.93696 0.89412 0.79720 0.91638 0.79447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.09 37.16 0.37 -0.19 16 2 C 0.13 0.44 7.21 -4.04 -0.03 0.41 16 3 N -0.36 -2.57 3.65 -60.81 -0.22 -2.79 16 4 C 0.13 1.00 11.25 -16.56 -0.19 0.81 16 5 C -0.29 -2.71 6.13 -105.07 -0.64 -3.35 16 6 C 0.60 6.74 7.78 -12.52 -0.10 6.64 16 7 O -0.55 -8.20 16.56 5.28 0.09 -8.12 16 8 N -0.72 -6.77 4.98 -54.88 -0.27 -7.04 16 9 C 0.14 1.60 2.30 -67.93 -0.16 1.44 16 10 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 11 C -0.16 -1.85 9.02 37.16 0.34 -1.51 16 12 C 0.08 0.84 2.66 -67.71 -0.18 0.66 16 13 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16 14 C -0.14 -1.36 8.93 37.16 0.33 -1.03 16 15 N -0.66 -9.65 5.14 -107.99 -0.55 -10.20 16 16 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 17 C 0.45 10.12 7.82 -10.98 -0.09 10.03 16 18 O -0.56 -15.00 15.78 5.55 0.09 -14.92 16 19 N -0.59 -14.02 5.09 -10.96 -0.06 -14.08 16 20 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 21 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.82 13.96 55.50 0.77 -25.05 16 24 Si 0.88 19.37 27.74 -169.99 -4.71 14.66 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 28 C 0.08 0.63 11.50 -16.98 -0.20 0.43 16 29 N -0.29 -2.60 12.33 30.86 0.38 -2.22 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.10 0.11 8.06 -51.93 -0.42 -0.30 16 35 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.40 2.72 5.53 -40.82 -0.23 2.50 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.07 7.17 -51.93 -0.37 0.70 16 39 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 40 H 0.05 0.33 6.29 -51.93 -0.33 0.00 16 41 H 0.07 0.74 6.56 -51.93 -0.34 0.40 16 42 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 43 H 0.35 5.53 7.62 -39.29 -0.30 5.24 16 44 H 0.05 0.64 8.05 -51.93 -0.42 0.22 16 45 H 0.09 1.25 7.44 -51.93 -0.39 0.87 16 46 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.19 0.88 7.50 -52.49 -0.39 0.48 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -36.64 396.11 -6.37 -43.01 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.04 Total: 13.44 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.81 Total: 7.34 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.05 Total: -61.38 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.18 Total: -23.03 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.64 -6.37 -43.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.386 kcal (2) G-P(sol) polarization free energy of solvation -36.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds