Wall clock time and date at job start Tue Mar 31 2020 20:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46929 * 2 1 4 4 C 1.34257 * 125.75897 * 125.00224 * 3 2 1 5 5 C 1.38037 * 107.42081 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41684 * 180.02562 * 5 4 3 7 7 O 1.21599 * 119.99971 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00065 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00015 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.47299 * 35.00074 * 9 8 6 11 11 C 1.53002 * 109.47312 * 275.00110 * 9 8 6 12 12 C 1.53001 * 109.47412 * 154.99938 * 9 8 6 13 13 H 1.09002 * 109.46725 * 295.00098 * 12 9 8 14 14 C 1.52998 * 109.47050 * 54.99837 * 12 9 8 15 15 N 1.46902 * 109.47364 * 175.00166 * 12 9 8 16 16 C 1.46901 * 110.99573 * 154.99859 * 15 12 9 17 17 C 1.50709 * 109.46415 * 179.97438 * 16 15 12 18 18 O 1.21287 * 120.00368 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99235 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99421 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00170 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99990 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00129 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00003 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47182 * 89.99970 * 24 22 20 26 26 H 1.48501 * 109.47237 * 210.00370 * 24 22 20 27 27 H 1.48497 * 109.46859 * 329.99974 * 24 22 20 28 28 C 1.41295 * 107.17157 * 359.97438 * 5 4 3 29 29 N 1.30444 * 108.01985 * 0.02562 * 28 5 4 30 30 H 1.09005 * 109.46903 * 60.00636 * 1 2 3 31 31 H 1.08997 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47160 * 300.00407 * 1 2 3 33 33 H 1.09000 * 109.47160 * 239.99593 * 2 1 3 34 34 H 1.09005 * 109.46903 * 119.99364 * 2 1 3 35 35 H 1.08002 * 126.28642 * 359.97438 * 4 3 2 36 36 H 0.96996 * 120.00521 * 359.97438 * 8 6 5 37 37 H 1.08999 * 109.46988 * 59.99886 * 11 9 8 38 38 H 1.09001 * 109.47212 * 180.02562 * 11 9 8 39 39 H 1.09000 * 109.46572 * 299.99524 * 11 9 8 40 40 H 1.08998 * 109.47184 * 300.00049 * 14 12 9 41 41 H 1.09000 * 109.47093 * 59.99973 * 14 12 9 42 42 H 1.09003 * 109.46972 * 180.02562 * 14 12 9 43 43 H 1.00901 * 110.99511 * 31.04945 * 15 12 9 44 44 H 1.08998 * 109.47124 * 299.99439 * 16 15 12 45 45 H 1.08998 * 109.47402 * 60.00276 * 16 15 12 46 46 H 0.96996 * 120.00739 * 0.02562 * 19 17 16 47 47 H 0.96998 * 120.00232 * 179.97438 * 23 22 20 48 48 H 1.08002 * 125.98990 * 179.73424 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8690 1.9127 0.8924 5 6 3.0713 3.2309 0.5363 6 6 3.9333 4.2032 1.2328 7 8 4.5509 3.8670 2.2249 8 7 4.0368 5.4647 0.7699 9 6 4.8930 6.4311 1.4623 10 1 5.7700 5.9202 1.8598 11 6 4.1123 7.0728 2.6112 12 6 5.3368 7.5158 0.4788 13 1 5.9675 7.0718 -0.2914 14 6 4.1054 8.1486 -0.1724 15 7 6.0954 8.5481 1.1979 16 6 7.0138 9.2524 0.2932 17 6 7.7723 10.3017 1.0646 18 8 7.5683 10.4479 2.2512 19 7 8.6781 11.0768 0.4359 20 6 9.3685 12.0309 1.1377 21 1 9.1863 12.1617 2.1941 22 6 10.3020 12.8305 0.4896 23 7 10.9635 13.7454 1.1621 24 14 10.6168 12.6048 -1.3378 25 1 9.6991 13.4804 -2.1100 26 1 12.0234 12.9673 -1.6464 27 1 10.3781 11.1871 -1.7098 28 6 2.2985 3.4736 -0.6214 29 7 1.6774 2.3690 -0.9308 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.3134 1.4024 1.7342 36 1 3.5445 5.7329 -0.0216 37 1 3.7962 6.3000 3.3118 38 1 4.7492 7.7921 3.1260 39 1 3.2354 7.5838 2.2136 40 1 3.5426 7.3826 -0.7059 41 1 3.4747 8.5925 0.5978 42 1 4.4217 8.9211 -0.8734 43 1 6.5927 8.1515 1.9811 44 1 7.7163 8.5396 -0.1386 45 1 6.4438 9.7294 -0.5042 46 1 8.8415 10.9596 -0.5130 47 1 11.6154 14.3032 0.7098 48 1 2.2300 4.4108 -1.1538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717402543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:07 Heat of formation + Delta-G solvation = -19.421736 kcal Electronic energy + Delta-G solvation = -28274.029295 eV Core-core repulsion = 24171.714644 eV Total energy + Delta-G solvation = -4102.314651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.37406 -40.71406 -40.18622 -38.40495 -36.06419 -35.51812 -35.20487 -33.72885 -32.30494 -31.52521 -30.52168 -29.80616 -28.23297 -26.03854 -25.42019 -24.56719 -23.50011 -21.65072 -21.27894 -21.07956 -20.65288 -20.29194 -19.03368 -17.78383 -17.29109 -17.06816 -16.72560 -16.67747 -16.58389 -16.09146 -15.72338 -15.58051 -15.30813 -15.09432 -15.05481 -14.67971 -14.52924 -14.34202 -13.99688 -13.77661 -13.64581 -13.45647 -13.34624 -13.08636 -13.01549 -12.98203 -12.84123 -12.46943 -12.45905 -12.39522 -11.96493 -11.94108 -11.83716 -11.61040 -11.49165 -10.90684 -10.59185 -10.41617 -10.22687 -10.15088 -9.63709 -9.33735 -8.39473 -6.00372 0.54368 1.18404 1.31593 1.37358 1.39647 1.46025 1.98494 2.19998 2.24865 2.48836 2.82441 3.16999 3.41999 3.48535 3.68409 3.79517 3.98512 4.02173 4.07334 4.12323 4.17256 4.27307 4.35376 4.42105 4.45679 4.51484 4.59577 4.70229 4.70484 4.80123 4.87503 4.89711 4.90066 5.06321 5.09598 5.21247 5.33901 5.44002 5.53376 5.56725 5.57681 5.88267 5.92792 6.07069 6.35506 6.50680 6.61697 6.67238 6.90346 7.33405 7.42118 7.99205 8.78268 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029138 B = 0.001720 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.728766 B =16270.878792 C =16657.785733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.358 5.358 4 C 0.129 3.871 5 C -0.316 4.316 6 C 0.595 3.405 7 O -0.593 6.593 8 N -0.705 5.705 9 C 0.151 3.849 10 H 0.066 0.934 11 C -0.150 4.150 12 C 0.083 3.917 13 H 0.064 0.936 14 C -0.144 4.144 15 N -0.673 5.673 16 C 0.063 3.937 17 C 0.449 3.551 18 O -0.613 6.613 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.054 0.946 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.256 1.256 26 H -0.276 1.276 27 H -0.231 1.231 28 C 0.086 3.914 29 N -0.320 5.320 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.203 0.797 36 H 0.412 0.588 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.343 0.657 44 H 0.076 0.924 45 H 0.118 0.882 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.786 -29.602 -11.703 38.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.136 5.136 4 C -0.024 4.024 5 C -0.331 4.331 6 C 0.384 3.616 7 O -0.475 6.475 8 N -0.358 5.358 9 C 0.046 3.954 10 H 0.085 0.915 11 C -0.209 4.209 12 C -0.027 4.027 13 H 0.082 0.918 14 C -0.202 4.202 15 N -0.306 5.306 16 C -0.070 4.070 17 C 0.237 3.763 18 O -0.498 6.498 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.072 0.928 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.785 3.215 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.154 1.154 28 C -0.102 4.102 29 N -0.140 5.140 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.220 0.780 36 H 0.251 0.749 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.163 0.837 44 H 0.094 0.906 45 H 0.136 0.864 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -22.726 -29.835 -11.105 39.115 hybrid contribution 1.771 0.489 -0.142 1.842 sum -20.956 -29.347 -11.247 37.774 Atomic orbital electron populations 1.22021 0.93224 1.04233 1.02388 1.22235 0.96590 0.75325 1.06242 1.48976 1.33588 1.11469 1.19606 1.23332 0.91009 0.93509 0.94505 1.20210 1.12707 0.95758 1.04472 1.17525 0.79765 0.81705 0.82591 1.90762 1.48801 1.79710 1.28252 1.45700 1.48455 1.09656 1.31961 1.20824 0.93493 0.88467 0.92635 0.91540 1.22037 1.01144 1.00006 0.97680 1.21765 0.96469 0.89914 0.94556 0.91827 1.21917 0.96396 1.01233 1.00624 1.60219 1.29927 1.30181 1.10290 1.21695 0.95009 0.95024 0.95242 1.21002 0.82129 0.84982 0.88222 1.90551 1.68517 1.72518 1.18180 1.42022 1.37192 1.33198 1.10900 1.19017 1.19225 1.12608 0.95014 0.92753 1.26119 0.95240 0.94841 1.05163 1.69809 1.26285 1.22138 1.39380 0.85356 0.78807 0.80840 0.76451 1.18074 1.20167 1.15383 1.24488 0.92997 0.98279 0.94405 1.77111 1.24608 0.97806 1.14475 0.92652 0.88152 0.92890 0.88209 0.85464 0.78011 0.74859 0.93996 0.91893 0.91029 0.89927 0.92143 0.91939 0.83741 0.90648 0.86414 0.77456 0.91193 0.76741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 10.09 71.98 0.73 -0.10 16 2 C 0.11 0.57 7.21 86.38 0.62 1.19 16 3 N -0.36 -4.48 3.65 -346.29 -1.26 -5.74 16 4 C 0.13 1.84 11.25 84.27 0.95 2.79 16 5 C -0.32 -5.38 6.13 -20.15 -0.12 -5.50 16 6 C 0.59 12.92 7.78 86.66 0.67 13.59 16 7 O -0.59 -17.87 16.56 -4.03 -0.07 -17.93 16 8 N -0.70 -11.93 4.98 -445.80 -2.22 -14.15 16 9 C 0.15 3.20 2.30 44.99 0.10 3.30 16 10 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 11 C -0.15 -3.53 9.02 71.98 0.65 -2.89 16 12 C 0.08 1.61 2.66 44.91 0.12 1.73 16 13 H 0.06 1.09 7.80 -2.39 -0.02 1.07 16 14 C -0.14 -2.20 8.93 71.98 0.64 -1.56 16 15 N -0.67 -18.85 5.14 -495.56 -2.54 -21.39 16 16 C 0.06 1.83 5.97 85.56 0.51 2.34 16 17 C 0.45 20.07 7.82 87.66 0.69 20.76 16 18 O -0.61 -34.02 15.78 -3.05 -0.05 -34.07 16 19 N -0.59 -27.74 5.09 -306.98 -1.56 -29.31 16 20 C -0.33 -19.39 10.16 84.04 0.85 -18.53 16 21 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 23 N -0.94 -56.71 13.96 21.66 0.30 -56.41 16 24 Si 0.97 38.67 27.74 68.60 1.90 40.58 16 25 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 26 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 27 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 28 C 0.09 1.16 11.50 85.65 0.99 2.14 16 29 N -0.32 -5.08 12.33 -56.27 -0.69 -5.77 16 30 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.13 -0.06 8.06 -2.38 -0.02 -0.08 16 35 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.41 4.31 5.53 -92.71 -0.51 3.80 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.72 7.17 -2.39 -0.02 1.70 16 39 H 0.07 1.49 6.56 -2.39 -0.02 1.47 16 40 H 0.08 0.71 6.29 -2.39 -0.02 0.70 16 41 H 0.06 1.09 6.56 -2.39 -0.02 1.07 16 42 H 0.06 0.97 7.45 -2.39 -0.02 0.96 16 43 H 0.34 10.81 7.62 -89.69 -0.68 10.13 16 44 H 0.08 1.82 8.05 -2.39 -0.02 1.80 16 45 H 0.12 2.83 7.44 -2.39 -0.02 2.81 16 46 H 0.39 15.02 5.76 -92.71 -0.53 14.48 16 47 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 48 H 0.22 1.30 7.50 -2.91 -0.02 1.28 16 Total: -1.00 -86.98 396.11 0.89 -86.08 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.78 Total: 39.22 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 7.86 Total: 18.89 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -7.98 Total: -132.77 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -0.11 Total: -52.01 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.90 Total: 40.58 kcal Total: -86.98 0.89 -86.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.662 kcal (2) G-P(sol) polarization free energy of solvation -86.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds