Wall clock time and date at job start Tue Mar 31 2020 20:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47161 * 2 1 4 4 C 1.34259 * 125.75645 * 124.99718 * 3 2 1 5 5 C 1.38035 * 107.42064 * 180.02562 * 4 3 2 6 6 C 1.47433 * 126.41663 * 179.97438 * 5 4 3 7 7 O 1.21603 * 119.99981 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00143 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00080 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47120 * 325.00068 * 9 8 6 11 11 C 1.53006 * 109.46997 * 84.99676 * 9 8 6 12 12 C 1.52999 * 109.47266 * 204.99535 * 9 8 6 13 13 H 1.09000 * 109.47486 * 300.00309 * 12 9 8 14 14 C 1.53006 * 109.46623 * 60.00137 * 12 9 8 15 15 N 1.46899 * 109.47248 * 179.97438 * 12 9 8 16 16 C 1.46897 * 111.00133 * 155.00600 * 15 12 9 17 17 C 1.50705 * 109.47250 * 180.02562 * 16 15 12 18 18 O 1.21290 * 119.99690 * 359.97438 * 17 16 15 19 19 N 1.34770 * 119.99724 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99768 * 179.97438 * 19 17 16 21 21 H 1.08008 * 120.00079 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00393 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99836 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00366 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47327 * 90.00288 * 24 22 20 26 26 H 1.48505 * 109.47312 * 210.00387 * 24 22 20 27 27 H 1.48504 * 109.47055 * 330.00259 * 24 22 20 28 28 C 1.41286 * 107.17276 * 0.22767 * 5 4 3 29 29 N 1.30450 * 108.01828 * 359.61526 * 28 5 4 30 30 H 1.09007 * 109.47259 * 59.99915 * 1 2 3 31 31 H 1.09001 * 109.47287 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47334 * 299.99928 * 1 2 3 33 33 H 1.09003 * 109.47007 * 240.00182 * 2 1 3 34 34 H 1.09000 * 109.47205 * 120.00475 * 2 1 3 35 35 H 1.08006 * 126.28923 * 0.04870 * 4 3 2 36 36 H 0.97003 * 120.00401 * 359.97438 * 8 6 5 37 37 H 1.08996 * 109.47261 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.47377 * 300.00385 * 11 9 8 39 39 H 1.09000 * 109.46866 * 60.00236 * 11 9 8 40 40 H 1.09001 * 109.47002 * 179.97438 * 14 12 9 41 41 H 1.08993 * 109.46955 * 300.00075 * 14 12 9 42 42 H 1.09000 * 109.47050 * 59.99904 * 14 12 9 43 43 H 1.00901 * 110.99931 * 31.04927 * 15 12 9 44 44 H 1.09003 * 109.46826 * 299.99875 * 16 15 12 45 45 H 1.08993 * 109.47326 * 59.99934 * 16 15 12 46 46 H 0.96996 * 120.00663 * 359.97438 * 19 17 16 47 47 H 0.97000 * 120.00384 * 179.97438 * 23 22 20 48 48 H 1.07998 * 125.99551 * 179.73783 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8689 1.9125 0.8925 5 6 3.0704 3.2310 0.5371 6 6 3.9313 4.2037 1.2346 7 8 4.5493 3.8673 2.2263 8 7 4.0334 5.4658 0.7729 9 6 4.8884 6.4325 1.4663 10 1 4.8550 6.2432 2.5392 11 6 6.3279 6.2898 0.9678 12 6 4.3888 7.8506 1.1828 13 1 4.4222 8.0400 0.1099 14 6 2.9493 7.9933 1.6813 15 7 5.2458 8.8199 1.8786 16 6 5.2110 10.1279 1.2108 17 6 6.1003 11.0936 1.9508 18 8 6.7034 10.7283 2.9377 19 7 6.2255 12.3630 1.5159 20 6 7.0341 13.2417 2.1895 21 1 7.5712 12.9165 3.0683 22 6 7.1637 14.5504 1.7409 23 7 6.5107 14.9461 0.6713 24 14 8.2660 15.7474 2.6582 25 1 9.6402 15.6827 2.0993 26 1 7.7344 17.1257 2.5066 27 1 8.2997 15.3855 4.0980 28 6 2.2926 3.4756 -0.6167 29 7 1.6763 2.3694 -0.9299 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.3141 1.4020 1.7338 36 1 3.5407 5.7342 -0.0184 37 1 6.9640 7.0093 1.4833 38 1 6.6838 5.2795 1.1697 39 1 6.3613 6.4791 -0.1051 40 1 2.5935 9.0037 1.4798 41 1 2.3132 7.2741 1.1655 42 1 2.9159 7.8039 2.7542 43 1 6.1919 8.4774 1.9539 44 1 5.5646 10.0217 0.1852 45 1 4.1887 10.5059 1.2053 46 1 5.7435 12.6551 0.7265 47 1 6.6008 15.8598 0.3584 48 1 2.2223 4.4134 -1.1477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717402544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:10 Heat of formation + Delta-G solvation = 1.440693 kcal Electronic energy + Delta-G solvation = -28210.972274 eV Core-core repulsion = 24109.562286 eV Total energy + Delta-G solvation = -4101.409988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76384 -39.70892 -38.36989 -37.13079 -35.03757 -34.36713 -33.74906 -31.34687 -31.05843 -30.93802 -29.88210 -29.42908 -26.37020 -24.76000 -24.23107 -23.76187 -22.42000 -21.12929 -20.43963 -20.13264 -19.27157 -18.28440 -17.87575 -16.65412 -16.34620 -16.10246 -15.89993 -15.38514 -15.14194 -14.81736 -14.59288 -14.46534 -14.28119 -13.91247 -13.84386 -13.57025 -13.50417 -13.20689 -13.04221 -12.88109 -12.69158 -12.42335 -12.30039 -12.06757 -11.86954 -11.64282 -11.54191 -11.40913 -11.36456 -11.25157 -11.02063 -10.56188 -10.37461 -10.19763 -10.02568 -9.98985 -9.48883 -9.27070 -8.97220 -8.42708 -8.06522 -7.93837 -6.39823 -3.80486 1.19051 1.83025 1.87475 3.05038 3.19629 3.28250 3.29990 3.34635 3.88767 3.93284 4.14241 4.30519 4.34239 4.38683 4.42729 4.57676 4.62512 4.80944 4.90888 4.93527 5.04079 5.16905 5.19621 5.20702 5.27493 5.33363 5.43194 5.52007 5.56754 5.70540 5.73095 5.82856 5.93178 5.99955 6.00843 6.04604 6.19953 6.26277 6.38217 6.38514 6.42557 7.11520 7.23204 7.43094 7.57283 7.68049 8.08536 8.17452 8.63435 9.20063 9.56462 10.08047 10.77930 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.038618 B = 0.001627 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.881700 B =17210.251510 C =17560.300959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.128 3.872 5 C -0.293 4.293 6 C 0.597 3.403 7 O -0.548 6.548 8 N -0.717 5.717 9 C 0.143 3.857 10 H 0.100 0.900 11 C -0.170 4.170 12 C 0.078 3.922 13 H 0.046 0.954 14 C -0.139 4.139 15 N -0.661 5.661 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.081 3.919 29 N -0.295 5.295 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.188 0.812 36 H 0.397 0.603 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.352 0.648 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.463 -28.095 -6.760 31.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.140 5.140 4 C -0.024 4.024 5 C -0.308 4.308 6 C 0.384 3.616 7 O -0.426 6.426 8 N -0.368 5.368 9 C 0.039 3.961 10 H 0.118 0.882 11 C -0.229 4.229 12 C -0.033 4.033 13 H 0.064 0.936 14 C -0.197 4.197 15 N -0.297 5.297 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.107 4.107 29 N -0.115 5.115 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.205 0.795 36 H 0.231 0.769 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.174 0.826 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.941 -28.936 -5.827 32.230 hybrid contribution 1.048 1.279 -0.818 1.845 sum -11.893 -27.657 -6.645 30.831 Atomic orbital electron populations 1.22062 0.93305 1.03201 1.03844 1.21848 0.96516 0.76803 1.04352 1.48660 1.34300 1.10652 1.20436 1.23008 0.91450 0.93646 0.94290 1.20273 1.11555 0.95436 1.03511 1.17183 0.80105 0.81238 0.83063 1.90788 1.46992 1.78614 1.26240 1.45738 1.48915 1.10520 1.31649 1.21054 0.89260 0.86996 0.98825 0.88201 1.22263 0.96199 1.03080 1.01308 1.21738 0.94885 0.90336 0.96353 0.93588 1.21805 0.94287 1.01409 1.02239 1.60173 1.16032 1.01379 1.52092 1.21719 1.00817 0.90236 0.95328 1.19804 0.86513 0.83523 0.87538 1.90530 1.50353 1.77632 1.28086 1.41854 1.42140 1.08561 1.27510 1.19715 1.22239 0.90557 1.10355 0.87905 1.25252 0.98179 0.97889 0.96604 1.69613 1.42403 1.18942 1.23413 0.85858 0.79584 0.79016 0.79841 1.20451 1.20948 1.19395 1.24074 0.94121 0.97456 0.95075 1.77143 1.23864 0.97041 1.13436 0.90898 0.90394 0.91876 0.89233 0.88150 0.79531 0.76893 0.90868 0.91661 0.92548 0.92364 0.92880 0.91744 0.82573 0.93843 0.89537 0.77480 0.91912 0.79406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.09 37.16 0.37 -0.22 16 2 C 0.13 0.46 7.21 -4.05 -0.03 0.43 16 3 N -0.36 -2.63 3.65 -60.81 -0.22 -2.85 16 4 C 0.13 1.02 11.25 -16.56 -0.19 0.83 16 5 C -0.29 -2.74 6.13 -105.07 -0.64 -3.38 16 6 C 0.60 6.83 7.78 -12.52 -0.10 6.73 16 7 O -0.55 -8.28 16.56 5.27 0.09 -8.20 16 8 N -0.72 -6.87 4.38 -54.87 -0.24 -7.11 16 9 C 0.14 1.66 2.29 -67.93 -0.16 1.51 16 10 H 0.10 1.41 7.58 -51.93 -0.39 1.02 16 11 C -0.17 -1.96 9.25 37.16 0.34 -1.61 16 12 C 0.08 0.93 2.28 -67.71 -0.15 0.77 16 13 H 0.05 0.50 7.80 -51.93 -0.41 0.09 16 14 C -0.14 -1.59 9.26 37.16 0.34 -1.24 16 15 N -0.66 -10.56 5.93 -107.99 -0.64 -11.20 16 16 C 0.05 0.90 5.97 -4.98 -0.03 0.87 16 17 C 0.44 10.41 7.82 -10.99 -0.09 10.33 16 18 O -0.58 -15.89 15.78 5.55 0.09 -15.81 16 19 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.08 0.65 11.50 -16.98 -0.20 0.45 16 29 N -0.30 -2.65 12.33 30.86 0.38 -2.27 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.10 0.13 8.06 -51.93 -0.42 -0.29 16 35 H 0.19 1.11 8.06 -52.48 -0.42 0.68 16 36 H 0.40 2.74 7.34 -40.82 -0.30 2.44 16 37 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 41 H 0.05 0.48 7.44 -51.93 -0.39 0.09 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.35 5.84 5.87 -39.29 -0.23 5.61 16 44 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 45 H 0.09 1.40 7.43 -51.93 -0.39 1.01 16 46 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.19 0.91 7.50 -52.49 -0.39 0.52 16 LS Contribution 403.00 15.07 6.07 6.07 Total: -1.00 -35.62 403.00 -6.84 -42.46 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -7.26 Total: 13.52 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -0.76 Total: 7.44 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.06 Total: -61.61 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.17 Total: -24.00 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.62 -6.84 -42.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.902 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds