Wall clock time and date at job start Tue Mar 31 2020 20:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47161 * 2 1 4 4 C 1.34259 * 125.75645 * 124.99718 * 3 2 1 5 5 C 1.38035 * 107.42064 * 180.02562 * 4 3 2 6 6 C 1.47433 * 126.41663 * 179.97438 * 5 4 3 7 7 O 1.21603 * 119.99981 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00143 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00080 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47120 * 325.00068 * 9 8 6 11 11 C 1.53006 * 109.46997 * 84.99676 * 9 8 6 12 12 C 1.52999 * 109.47266 * 204.99535 * 9 8 6 13 13 H 1.09000 * 109.47486 * 300.00309 * 12 9 8 14 14 C 1.53006 * 109.46623 * 60.00137 * 12 9 8 15 15 N 1.46899 * 109.47248 * 179.97438 * 12 9 8 16 16 C 1.46897 * 111.00133 * 155.00600 * 15 12 9 17 17 C 1.50705 * 109.47250 * 180.02562 * 16 15 12 18 18 O 1.21290 * 119.99690 * 359.97438 * 17 16 15 19 19 N 1.34770 * 119.99724 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99768 * 179.97438 * 19 17 16 21 21 H 1.08008 * 120.00079 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00393 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99836 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00366 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47327 * 90.00288 * 24 22 20 26 26 H 1.48505 * 109.47312 * 210.00387 * 24 22 20 27 27 H 1.48504 * 109.47055 * 330.00259 * 24 22 20 28 28 C 1.41286 * 107.17276 * 0.22767 * 5 4 3 29 29 N 1.30450 * 108.01828 * 359.61526 * 28 5 4 30 30 H 1.09007 * 109.47259 * 59.99915 * 1 2 3 31 31 H 1.09001 * 109.47287 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47334 * 299.99928 * 1 2 3 33 33 H 1.09003 * 109.47007 * 240.00182 * 2 1 3 34 34 H 1.09000 * 109.47205 * 120.00475 * 2 1 3 35 35 H 1.08006 * 126.28923 * 0.04870 * 4 3 2 36 36 H 0.97003 * 120.00401 * 359.97438 * 8 6 5 37 37 H 1.08996 * 109.47261 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.47377 * 300.00385 * 11 9 8 39 39 H 1.09000 * 109.46866 * 60.00236 * 11 9 8 40 40 H 1.09001 * 109.47002 * 179.97438 * 14 12 9 41 41 H 1.08993 * 109.46955 * 300.00075 * 14 12 9 42 42 H 1.09000 * 109.47050 * 59.99904 * 14 12 9 43 43 H 1.00901 * 110.99931 * 31.04927 * 15 12 9 44 44 H 1.09003 * 109.46826 * 299.99875 * 16 15 12 45 45 H 1.08993 * 109.47326 * 59.99934 * 16 15 12 46 46 H 0.96996 * 120.00663 * 359.97438 * 19 17 16 47 47 H 0.97000 * 120.00384 * 179.97438 * 23 22 20 48 48 H 1.07998 * 125.99551 * 179.73783 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8689 1.9125 0.8925 5 6 3.0704 3.2310 0.5371 6 6 3.9313 4.2037 1.2346 7 8 4.5493 3.8673 2.2263 8 7 4.0334 5.4658 0.7729 9 6 4.8884 6.4325 1.4663 10 1 4.8550 6.2432 2.5392 11 6 6.3279 6.2898 0.9678 12 6 4.3888 7.8506 1.1828 13 1 4.4222 8.0400 0.1099 14 6 2.9493 7.9933 1.6813 15 7 5.2458 8.8199 1.8786 16 6 5.2110 10.1279 1.2108 17 6 6.1003 11.0936 1.9508 18 8 6.7034 10.7283 2.9377 19 7 6.2255 12.3630 1.5159 20 6 7.0341 13.2417 2.1895 21 1 7.5712 12.9165 3.0683 22 6 7.1637 14.5504 1.7409 23 7 6.5107 14.9461 0.6713 24 14 8.2660 15.7474 2.6582 25 1 9.6402 15.6827 2.0993 26 1 7.7344 17.1257 2.5066 27 1 8.2997 15.3855 4.0980 28 6 2.2926 3.4756 -0.6167 29 7 1.6763 2.3694 -0.9299 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.3141 1.4020 1.7338 36 1 3.5407 5.7342 -0.0184 37 1 6.9640 7.0093 1.4833 38 1 6.6838 5.2795 1.1697 39 1 6.3613 6.4791 -0.1051 40 1 2.5935 9.0037 1.4798 41 1 2.3132 7.2741 1.1655 42 1 2.9159 7.8039 2.7542 43 1 6.1919 8.4774 1.9539 44 1 5.5646 10.0217 0.1852 45 1 4.1887 10.5059 1.2053 46 1 5.7435 12.6551 0.7265 47 1 6.6008 15.8598 0.3584 48 1 2.2223 4.4134 -1.1477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717402544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:09 Heat of formation + Delta-G solvation = -26.115672 kcal Electronic energy + Delta-G solvation = -28212.167208 eV Core-core repulsion = 24109.562286 eV Total energy + Delta-G solvation = -4102.604922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36477 -40.66847 -40.06574 -38.34109 -36.01829 -35.50887 -35.17733 -33.25923 -32.14389 -31.50810 -30.86870 -30.11293 -27.99502 -25.89069 -25.35923 -24.48003 -23.30744 -21.72368 -21.35769 -21.05476 -20.92756 -19.90614 -18.98538 -17.84641 -17.36623 -17.11198 -16.68281 -16.60549 -16.39376 -15.92416 -15.87127 -15.40385 -15.38527 -15.27042 -14.86167 -14.58223 -14.55728 -14.14429 -14.05359 -13.76161 -13.50632 -13.45553 -13.36346 -13.09803 -12.97469 -12.88103 -12.62898 -12.55785 -12.46145 -12.39875 -12.27234 -12.11113 -11.89467 -11.56773 -11.48742 -10.89948 -10.58305 -10.31695 -10.15771 -9.99351 -9.63335 -9.31386 -8.45034 -5.93447 0.55396 1.19366 1.39183 1.40408 1.43111 1.55690 2.07618 2.18667 2.32898 2.50422 3.02533 3.22536 3.46856 3.54633 3.63880 3.80444 4.01504 4.02190 4.07684 4.13067 4.22665 4.34158 4.35755 4.42861 4.47460 4.49764 4.60519 4.63279 4.72867 4.77593 4.80871 4.89291 4.90906 5.02280 5.06634 5.21687 5.24244 5.42496 5.43656 5.44353 5.52715 5.89125 5.92739 6.13828 6.41592 6.51664 6.62438 6.68369 7.14813 7.34959 7.58641 8.14413 8.72256 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.038618 B = 0.001627 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.881700 B =17210.251510 C =17560.300959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.358 5.358 4 C 0.129 3.871 5 C -0.315 4.315 6 C 0.597 3.403 7 O -0.593 6.593 8 N -0.703 5.703 9 C 0.152 3.848 10 H 0.070 0.930 11 C -0.165 4.165 12 C 0.084 3.916 13 H 0.073 0.927 14 C -0.137 4.137 15 N -0.679 5.679 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.275 1.275 28 C 0.086 3.914 29 N -0.321 5.321 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.203 0.797 36 H 0.413 0.587 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.346 0.654 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.490 -28.778 -8.365 32.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.136 5.136 4 C -0.024 4.024 5 C -0.330 4.330 6 C 0.386 3.614 7 O -0.474 6.474 8 N -0.354 5.354 9 C 0.047 3.953 10 H 0.088 0.912 11 C -0.223 4.223 12 C -0.026 4.026 13 H 0.091 0.909 14 C -0.195 4.195 15 N -0.315 5.315 16 C -0.065 4.065 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.200 1.200 28 C -0.101 4.101 29 N -0.141 5.141 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.220 0.780 36 H 0.251 0.749 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.168 0.832 44 H 0.090 0.910 45 H 0.123 0.877 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -14.025 -29.627 -7.502 33.627 hybrid contribution 1.319 1.376 -0.316 1.932 sum -12.706 -28.251 -7.818 31.948 Atomic orbital electron populations 1.22020 0.93250 1.04227 1.02377 1.22230 0.96568 0.75338 1.06239 1.48970 1.33607 1.11463 1.19605 1.23331 0.91011 0.93538 0.94489 1.20198 1.12560 0.95693 1.04576 1.17484 0.79688 0.81734 0.82480 1.90765 1.48953 1.79416 1.28292 1.45526 1.48423 1.09676 1.31807 1.20783 0.89773 0.87347 0.97429 0.91177 1.22197 0.95838 1.02064 1.02215 1.21767 0.94237 0.89196 0.97408 0.90928 1.21807 0.94271 1.02191 1.01246 1.60162 1.16304 1.01706 1.53371 1.21578 1.00094 0.89305 0.95524 1.20920 0.86021 0.83636 0.86995 1.90500 1.52085 1.78385 1.30121 1.41909 1.42246 1.09107 1.27692 1.19667 1.23969 0.92046 1.10769 0.90444 1.25999 0.99078 0.98777 0.97241 1.69666 1.42779 1.19614 1.23932 0.84949 0.78103 0.77196 0.78217 1.19616 1.19518 1.19958 1.24486 0.92981 0.98243 0.94430 1.77111 1.24737 0.97742 1.14498 0.92686 0.88142 0.92896 0.88219 0.85442 0.77999 0.74947 0.91982 0.92729 0.90780 0.92399 0.90197 0.93828 0.83226 0.91046 0.87661 0.76897 0.91315 0.76771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 10.09 71.98 0.73 -0.19 16 2 C 0.12 0.62 7.21 86.38 0.62 1.24 16 3 N -0.36 -4.67 3.65 -346.32 -1.26 -5.93 16 4 C 0.13 1.90 11.25 84.27 0.95 2.85 16 5 C -0.32 -5.53 6.13 -20.15 -0.12 -5.65 16 6 C 0.60 13.32 7.78 86.67 0.67 13.99 16 7 O -0.59 -18.24 16.56 -4.04 -0.07 -18.31 16 8 N -0.70 -12.43 4.38 -445.78 -1.95 -14.38 16 9 C 0.15 3.43 2.29 44.99 0.10 3.53 16 10 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 11 C -0.16 -3.70 9.25 71.98 0.67 -3.04 16 12 C 0.08 1.84 2.28 44.92 0.10 1.94 16 13 H 0.07 1.28 7.80 -2.39 -0.02 1.26 16 14 C -0.14 -2.86 9.26 71.98 0.67 -2.19 16 15 N -0.68 -21.16 5.93 -495.57 -2.94 -24.10 16 16 C 0.07 2.24 5.97 85.56 0.51 2.75 16 17 C 0.44 20.76 7.82 87.66 0.69 21.44 16 18 O -0.62 -35.02 15.78 -3.06 -0.05 -35.06 16 19 N -0.57 -29.28 5.29 -306.98 -1.62 -30.90 16 20 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 23 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 24 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 28 C 0.09 1.22 11.50 85.65 0.99 2.20 16 29 N -0.32 -5.30 12.33 -56.28 -0.69 -5.99 16 30 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.13 -0.01 8.06 -2.39 -0.02 -0.03 16 35 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.41 4.55 7.34 -92.71 -0.68 3.87 16 37 H 0.06 1.54 6.21 -2.39 -0.01 1.52 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.22 7.45 -2.39 -0.02 1.20 16 41 H 0.08 1.22 7.44 -2.39 -0.02 1.20 16 42 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.35 11.49 5.87 -89.69 -0.53 10.97 16 44 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 45 H 0.11 3.14 7.43 -2.39 -0.02 3.13 16 46 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 47 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 48 H 0.22 1.48 7.50 -2.91 -0.02 1.46 16 Total: -1.00 -79.19 403.00 0.64 -78.55 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: -0.93 Total: 39.62 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 7.85 Total: 20.45 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -8.19 Total: -130.40 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.12 Total: -53.37 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -79.19 0.64 -78.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.434 kcal (2) G-P(sol) polarization free energy of solvation -79.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds