Wall clock time and date at job start Tue Mar 31 2020 20:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47242 * 2 1 4 4 C 1.34264 * 125.75279 * 124.99689 * 3 2 1 5 5 C 1.38045 * 107.41718 * 180.02562 * 4 3 2 6 6 C 1.47426 * 126.41432 * 179.97438 * 5 4 3 7 7 O 1.21609 * 120.00059 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00065 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00033 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.46566 * 324.99334 * 9 8 6 11 11 C 1.52997 * 109.47289 * 84.99600 * 9 8 6 12 12 C 1.52992 * 109.46999 * 205.00067 * 9 8 6 13 13 H 1.08996 * 109.47729 * 64.99409 * 12 9 8 14 14 C 1.53001 * 109.47279 * 304.99690 * 12 9 8 15 15 N 1.46897 * 109.47343 * 184.99666 * 12 9 8 16 16 C 1.46892 * 111.00347 * 204.99709 * 15 12 9 17 17 C 1.50701 * 109.47496 * 180.02562 * 16 15 12 18 18 O 1.21301 * 119.99542 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00605 * 179.97438 * 17 16 15 20 20 C 1.37098 * 120.00215 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99919 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99893 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00090 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99824 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47258 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46887 * 120.00115 * 24 22 20 27 27 H 1.48496 * 109.46905 * 239.99815 * 24 22 20 28 28 C 1.41287 * 107.17208 * 0.24457 * 5 4 3 29 29 N 1.30453 * 108.02095 * 359.59074 * 28 5 4 30 30 H 1.09004 * 109.46904 * 59.99480 * 1 2 3 31 31 H 1.09000 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47375 * 299.99947 * 1 2 3 33 33 H 1.09000 * 109.47081 * 240.00776 * 2 1 3 34 34 H 1.08995 * 109.47193 * 120.00554 * 2 1 3 35 35 H 1.07998 * 126.28904 * 0.02718 * 4 3 2 36 36 H 0.96992 * 119.99904 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.46832 * 60.00146 * 11 9 8 39 39 H 1.09004 * 109.47261 * 300.00128 * 11 9 8 40 40 H 1.09000 * 109.47104 * 59.99686 * 14 12 9 41 41 H 1.08993 * 109.47832 * 180.02562 * 14 12 9 42 42 H 1.09001 * 109.46924 * 300.00271 * 14 12 9 43 43 H 1.00898 * 111.00007 * 328.95917 * 15 12 9 44 44 H 1.09000 * 109.47597 * 299.99663 * 16 15 12 45 45 H 1.08997 * 109.47593 * 60.00182 * 16 15 12 46 46 H 0.97003 * 119.99393 * 0.02562 * 19 17 16 47 47 H 0.96998 * 120.00205 * 179.97438 * 23 22 20 48 48 H 1.07997 * 125.99076 * 179.73190 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8690 1.9125 0.8926 5 6 3.0706 3.2311 0.5372 6 6 3.9314 4.2037 1.2346 7 8 4.5494 3.8672 2.2265 8 7 4.0335 5.4658 0.7730 9 6 4.8894 6.4322 1.4658 10 1 4.8567 6.2427 2.5387 11 6 6.3285 6.2890 0.9662 12 6 4.3900 7.8504 1.1829 13 1 3.3987 7.9799 1.6171 14 6 4.3176 8.0736 -0.3290 15 7 5.3160 8.8234 1.7777 16 6 4.6346 10.0934 2.0612 17 6 5.6140 11.0644 2.6685 18 8 6.7667 10.7313 2.8471 19 7 5.2097 12.3033 3.0123 20 6 6.1007 13.1865 3.5653 21 1 7.1267 12.8896 3.7250 22 6 5.6836 14.4635 3.9202 23 7 4.4350 14.8246 3.7263 24 14 6.8975 15.6666 4.6743 25 1 8.2297 15.0204 4.7870 26 1 7.0030 16.8700 3.8107 27 1 6.4247 16.0660 6.0241 28 6 2.2925 3.4758 -0.6165 29 7 1.6764 2.3694 -0.9298 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.3139 1.4020 1.7340 36 1 3.5409 5.7341 -0.0183 37 1 6.9652 7.0083 1.4813 38 1 6.3611 6.4785 -0.1067 39 1 6.6842 5.2786 1.1678 40 1 3.6306 7.3516 -0.7703 41 1 3.9623 9.0840 -0.5306 42 1 5.3090 7.9440 -0.7632 43 1 5.7468 8.4503 2.6103 44 1 4.2394 10.5087 1.1342 45 1 3.8158 9.9186 2.7591 46 1 4.2880 12.5698 2.8692 47 1 4.1438 15.7159 3.9744 48 1 2.2220 4.4136 -1.1473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717402545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:13 Heat of formation + Delta-G solvation = 3.037076 kcal Electronic energy + Delta-G solvation = -28214.235966 eV Core-core repulsion = 24112.895202 eV Total energy + Delta-G solvation = -4101.340764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.76277 -39.72942 -38.36351 -37.18730 -35.03660 -34.37334 -33.73841 -31.40302 -31.08213 -30.95318 -29.75031 -28.95013 -26.53929 -24.95917 -24.39596 -23.79532 -22.63245 -21.10475 -20.28981 -19.70119 -19.28679 -18.34078 -17.86970 -16.64408 -16.20384 -16.10195 -15.83350 -15.49812 -15.10525 -15.00913 -14.71843 -14.44920 -14.23398 -14.13481 -13.87219 -13.67430 -13.22141 -13.11642 -13.00689 -12.74840 -12.69249 -12.42069 -12.15489 -12.07351 -11.97897 -11.76784 -11.56386 -11.40982 -11.32993 -11.08374 -10.86306 -10.62912 -10.32487 -10.20428 -10.02474 -9.98272 -9.49837 -9.25929 -8.96205 -8.43390 -8.07836 -7.93856 -6.39853 -3.80464 1.19019 1.82983 1.87534 3.07249 3.18140 3.28676 3.29982 3.36236 3.88954 3.93450 4.13555 4.30572 4.34281 4.37492 4.42848 4.58000 4.63664 4.80518 4.91854 4.94070 5.04086 5.17409 5.20536 5.21792 5.27490 5.33827 5.49575 5.52086 5.62824 5.64446 5.80351 5.86245 5.97781 5.98795 5.99171 6.06083 6.22689 6.31488 6.38405 6.46766 6.50968 7.11437 7.20737 7.44453 7.57499 7.64688 8.08761 8.17652 8.63413 9.20179 9.56614 10.08046 10.77995 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031554 B = 0.001641 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.155925 B =17060.685436 C =17317.867583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.128 3.872 5 C -0.293 4.293 6 C 0.595 3.405 7 O -0.550 6.550 8 N -0.719 5.719 9 C 0.144 3.856 10 H 0.087 0.913 11 C -0.157 4.157 12 C 0.076 3.924 13 H 0.047 0.953 14 C -0.144 4.144 15 N -0.656 5.656 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.081 3.919 29 N -0.295 5.295 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.188 0.812 36 H 0.397 0.603 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.351 0.649 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.270 0.730 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 -27.812 -9.968 31.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.140 5.140 4 C -0.024 4.024 5 C -0.308 4.308 6 C 0.383 3.617 7 O -0.428 6.428 8 N -0.372 5.372 9 C 0.039 3.961 10 H 0.105 0.895 11 C -0.215 4.215 12 C -0.035 4.035 13 H 0.065 0.935 14 C -0.202 4.202 15 N -0.290 5.290 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.466 6.466 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.107 4.107 29 N -0.115 5.115 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.205 0.795 36 H 0.233 0.767 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.172 0.828 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.688 -28.596 -10.516 31.972 hybrid contribution -0.375 1.195 1.203 1.737 sum -10.063 -27.401 -9.313 30.640 Atomic orbital electron populations 1.22064 0.93307 1.03204 1.03842 1.21850 0.96513 0.76797 1.04360 1.48663 1.34295 1.10655 1.20433 1.23009 0.91447 0.93636 0.94298 1.20279 1.11539 0.95450 1.03528 1.17218 0.80096 0.81342 0.83084 1.90784 1.47040 1.78672 1.26333 1.45911 1.48889 1.10525 1.31832 1.21053 0.90548 0.86800 0.97668 0.89500 1.22125 0.95325 1.02089 1.01985 1.21719 0.94837 0.90307 0.96603 0.93469 1.21882 1.02256 1.01445 0.94597 1.60184 1.30859 1.02624 1.35366 1.21730 0.95303 0.90896 1.00269 1.19801 0.89180 0.83622 0.84710 1.90531 1.19349 1.77687 1.59023 1.41866 1.12750 1.10729 1.54774 1.19762 0.94331 0.92439 1.36254 0.87845 1.25257 0.96764 0.98009 0.97936 1.69619 1.15541 1.20872 1.48333 0.85802 0.80354 0.79806 0.78403 1.19204 1.20776 1.20806 1.24071 0.94133 0.97458 0.95077 1.77143 1.23860 0.97022 1.13426 0.90892 0.90386 0.91888 0.89216 0.88151 0.79527 0.76652 0.90061 0.92195 0.92833 0.93268 0.92073 0.91138 0.82812 0.89543 0.93824 0.77490 0.91963 0.79430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 10.09 37.16 0.37 -0.23 16 2 C 0.13 0.47 7.21 -4.04 -0.03 0.44 16 3 N -0.36 -2.67 3.65 -60.81 -0.22 -2.89 16 4 C 0.13 1.03 11.25 -16.56 -0.19 0.85 16 5 C -0.29 -2.80 6.13 -105.07 -0.64 -3.44 16 6 C 0.60 6.96 7.78 -12.52 -0.10 6.86 16 7 O -0.55 -8.40 16.56 5.27 0.09 -8.31 16 8 N -0.72 -7.11 4.98 -54.88 -0.27 -7.38 16 9 C 0.14 1.68 2.30 -67.93 -0.16 1.52 16 10 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 11 C -0.16 -1.91 9.02 37.16 0.34 -1.57 16 12 C 0.08 0.90 2.66 -67.72 -0.18 0.72 16 13 H 0.05 0.55 7.80 -51.93 -0.40 0.14 16 14 C -0.14 -1.47 8.93 37.16 0.33 -1.13 16 15 N -0.66 -10.19 5.13 -108.01 -0.55 -10.74 16 16 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 17 C 0.44 10.36 7.82 -10.98 -0.09 10.28 16 18 O -0.58 -15.74 15.78 5.54 0.09 -15.65 16 19 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.08 0.66 11.50 -16.98 -0.20 0.46 16 29 N -0.29 -2.68 12.33 30.86 0.38 -2.30 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.10 0.13 8.06 -51.93 -0.42 -0.28 16 35 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.40 2.93 5.53 -40.82 -0.23 2.70 16 37 H 0.08 1.10 7.17 -51.93 -0.37 0.73 16 38 H 0.06 0.68 6.56 -51.93 -0.34 0.33 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.36 6.29 -51.93 -0.33 0.03 16 41 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 42 H 0.07 0.77 6.56 -51.93 -0.34 0.43 16 43 H 0.35 5.78 7.62 -39.29 -0.30 5.48 16 44 H 0.09 1.37 7.44 -51.93 -0.39 0.99 16 45 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 46 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.19 0.95 7.50 -52.49 -0.39 0.55 16 LS Contribution 399.23 15.07 6.02 6.02 Total: -1.00 -35.37 399.23 -6.72 -42.09 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -7.08 Total: 13.69 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -0.80 Total: 7.59 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.00 Total: -61.55 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.17 Total: -23.96 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.37 -6.72 -42.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.126 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds