Wall clock time and date at job start Tue Mar 31 2020 20:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47242 * 2 1 4 4 C 1.34264 * 125.75279 * 124.99689 * 3 2 1 5 5 C 1.38045 * 107.41718 * 180.02562 * 4 3 2 6 6 C 1.47426 * 126.41432 * 179.97438 * 5 4 3 7 7 O 1.21609 * 120.00059 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00065 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00033 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.46566 * 324.99334 * 9 8 6 11 11 C 1.52997 * 109.47289 * 84.99600 * 9 8 6 12 12 C 1.52992 * 109.46999 * 205.00067 * 9 8 6 13 13 H 1.08996 * 109.47729 * 64.99409 * 12 9 8 14 14 C 1.53001 * 109.47279 * 304.99690 * 12 9 8 15 15 N 1.46897 * 109.47343 * 184.99666 * 12 9 8 16 16 C 1.46892 * 111.00347 * 204.99709 * 15 12 9 17 17 C 1.50701 * 109.47496 * 180.02562 * 16 15 12 18 18 O 1.21301 * 119.99542 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00605 * 179.97438 * 17 16 15 20 20 C 1.37098 * 120.00215 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99919 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99893 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00090 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99824 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47258 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46887 * 120.00115 * 24 22 20 27 27 H 1.48496 * 109.46905 * 239.99815 * 24 22 20 28 28 C 1.41287 * 107.17208 * 0.24457 * 5 4 3 29 29 N 1.30453 * 108.02095 * 359.59074 * 28 5 4 30 30 H 1.09004 * 109.46904 * 59.99480 * 1 2 3 31 31 H 1.09000 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47375 * 299.99947 * 1 2 3 33 33 H 1.09000 * 109.47081 * 240.00776 * 2 1 3 34 34 H 1.08995 * 109.47193 * 120.00554 * 2 1 3 35 35 H 1.07998 * 126.28904 * 0.02718 * 4 3 2 36 36 H 0.96992 * 119.99904 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.46832 * 60.00146 * 11 9 8 39 39 H 1.09004 * 109.47261 * 300.00128 * 11 9 8 40 40 H 1.09000 * 109.47104 * 59.99686 * 14 12 9 41 41 H 1.08993 * 109.47832 * 180.02562 * 14 12 9 42 42 H 1.09001 * 109.46924 * 300.00271 * 14 12 9 43 43 H 1.00898 * 111.00007 * 328.95917 * 15 12 9 44 44 H 1.09000 * 109.47597 * 299.99663 * 16 15 12 45 45 H 1.08997 * 109.47593 * 60.00182 * 16 15 12 46 46 H 0.97003 * 119.99393 * 0.02562 * 19 17 16 47 47 H 0.96998 * 120.00205 * 179.97438 * 23 22 20 48 48 H 1.07997 * 125.99076 * 179.73190 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8690 1.9125 0.8926 5 6 3.0706 3.2311 0.5372 6 6 3.9314 4.2037 1.2346 7 8 4.5494 3.8672 2.2265 8 7 4.0335 5.4658 0.7730 9 6 4.8894 6.4322 1.4658 10 1 4.8567 6.2427 2.5387 11 6 6.3285 6.2890 0.9662 12 6 4.3900 7.8504 1.1829 13 1 3.3987 7.9799 1.6171 14 6 4.3176 8.0736 -0.3290 15 7 5.3160 8.8234 1.7777 16 6 4.6346 10.0934 2.0612 17 6 5.6140 11.0644 2.6685 18 8 6.7667 10.7313 2.8471 19 7 5.2097 12.3033 3.0123 20 6 6.1007 13.1865 3.5653 21 1 7.1267 12.8896 3.7250 22 6 5.6836 14.4635 3.9202 23 7 4.4350 14.8246 3.7263 24 14 6.8975 15.6666 4.6743 25 1 8.2297 15.0204 4.7870 26 1 7.0030 16.8700 3.8107 27 1 6.4247 16.0660 6.0241 28 6 2.2925 3.4758 -0.6165 29 7 1.6764 2.3694 -0.9298 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.3139 1.4020 1.7340 36 1 3.5409 5.7341 -0.0183 37 1 6.9652 7.0083 1.4813 38 1 6.3611 6.4785 -0.1067 39 1 6.6842 5.2786 1.1678 40 1 3.6306 7.3516 -0.7703 41 1 3.9623 9.0840 -0.5306 42 1 5.3090 7.9440 -0.7632 43 1 5.7468 8.4503 2.6103 44 1 4.2394 10.5087 1.1342 45 1 3.8158 9.9186 2.7591 46 1 4.2880 12.5698 2.8692 47 1 4.1438 15.7159 3.9744 48 1 2.2220 4.4136 -1.1473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717402545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:12 Heat of formation + Delta-G solvation = -24.243927 kcal Electronic energy + Delta-G solvation = -28215.418959 eV Core-core repulsion = 24112.895202 eV Total energy + Delta-G solvation = -4102.523757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.37481 -40.69281 -40.06689 -38.38607 -36.03030 -35.51315 -35.18534 -33.26025 -32.26847 -31.52385 -30.50885 -29.80810 -28.10782 -26.14935 -25.48609 -24.58698 -23.52325 -21.65178 -21.09774 -21.08085 -20.65159 -19.91082 -19.04614 -17.81204 -17.22864 -17.07816 -16.71434 -16.59495 -16.49046 -16.08647 -15.84785 -15.60911 -15.33835 -15.23956 -15.04236 -14.68673 -14.36123 -14.22987 -13.79116 -13.60712 -13.51671 -13.38972 -13.35705 -13.06152 -13.02260 -12.97475 -12.82456 -12.47940 -12.46508 -12.38134 -12.10565 -11.93606 -11.84808 -11.61652 -11.49545 -10.90720 -10.59105 -10.32985 -10.14839 -9.99414 -9.63913 -9.33918 -8.45366 -5.93736 0.54278 1.17951 1.37645 1.39737 1.42966 1.57115 2.07479 2.19301 2.32646 2.48707 3.01119 3.22214 3.45686 3.53744 3.69045 3.79511 3.98474 4.02438 4.07367 4.12295 4.24714 4.34085 4.35487 4.42082 4.49365 4.51576 4.62292 4.69969 4.70501 4.80127 4.87529 4.88957 4.90063 5.06076 5.08411 5.21339 5.33364 5.42895 5.43606 5.55404 5.56077 5.88407 5.91234 6.12095 6.37231 6.50399 6.62005 6.66813 7.14657 7.32881 7.58465 8.14012 8.72244 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031554 B = 0.001641 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.155925 B =17060.685436 C =17317.867583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.358 5.358 4 C 0.130 3.870 5 C -0.316 4.316 6 C 0.595 3.405 7 O -0.593 6.593 8 N -0.705 5.705 9 C 0.152 3.848 10 H 0.066 0.934 11 C -0.149 4.149 12 C 0.082 3.918 13 H 0.059 0.941 14 C -0.143 4.143 15 N -0.668 5.668 16 C 0.066 3.934 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.085 3.915 29 N -0.320 5.320 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.204 0.796 36 H 0.412 0.588 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.343 0.657 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.631 -28.605 -10.984 32.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.136 5.136 4 C -0.023 4.023 5 C -0.332 4.332 6 C 0.384 3.616 7 O -0.475 6.475 8 N -0.358 5.358 9 C 0.047 3.953 10 H 0.085 0.915 11 C -0.208 4.208 12 C -0.028 4.028 13 H 0.076 0.924 14 C -0.201 4.201 15 N -0.301 5.301 16 C -0.066 4.066 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.102 4.102 29 N -0.140 5.140 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.221 0.779 36 H 0.251 0.749 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.162 0.838 44 H 0.126 0.874 45 H 0.083 0.917 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.178 -29.399 -11.589 33.519 hybrid contribution 0.038 1.321 1.495 1.996 sum -11.139 -28.077 -10.094 31.848 Atomic orbital electron populations 1.22023 0.93247 1.04240 1.02374 1.22236 0.96569 0.75304 1.06270 1.48979 1.33581 1.11473 1.19584 1.23336 0.90981 0.93489 0.94496 1.20208 1.12583 0.95741 1.04620 1.17528 0.79697 0.81818 0.82531 1.90760 1.48953 1.79442 1.28325 1.45712 1.48376 1.09764 1.31964 1.20812 0.90564 0.87225 0.96728 0.91547 1.22031 0.95413 1.00880 1.02450 1.21761 0.94338 0.89120 0.97598 0.92351 1.21904 1.02754 1.02377 0.93029 1.60219 1.31997 1.02865 1.35054 1.21583 0.93806 0.90143 1.01087 1.20892 0.89681 0.83682 0.83177 1.90501 1.21634 1.78423 1.60294 1.41928 1.12604 1.11293 1.55281 1.19707 0.94042 0.93984 1.38559 0.90372 1.26014 0.98520 0.98947 0.97722 1.69674 1.16563 1.21557 1.48323 0.84881 0.77838 0.77621 0.78060 1.19865 1.19598 1.19660 1.24479 0.93029 0.98257 0.94452 1.77112 1.24703 0.97703 1.14477 0.92679 0.88119 0.92913 0.88180 0.85420 0.77939 0.74911 0.91805 0.91026 0.93829 0.89890 0.92347 0.91931 0.83764 0.87441 0.91715 0.76966 0.91341 0.76837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 10.09 71.98 0.73 -0.20 16 2 C 0.12 0.62 7.21 86.38 0.62 1.25 16 3 N -0.36 -4.71 3.65 -346.31 -1.26 -5.97 16 4 C 0.13 1.93 11.25 84.28 0.95 2.88 16 5 C -0.32 -5.67 6.13 -20.15 -0.12 -5.79 16 6 C 0.60 13.52 7.78 86.66 0.67 14.19 16 7 O -0.59 -18.31 16.56 -4.06 -0.07 -18.38 16 8 N -0.71 -12.91 4.98 -445.80 -2.22 -15.13 16 9 C 0.15 3.44 2.30 44.99 0.10 3.55 16 10 H 0.07 1.81 7.58 -2.39 -0.02 1.80 16 11 C -0.15 -3.63 9.02 71.98 0.65 -2.98 16 12 C 0.08 1.79 2.66 44.91 0.12 1.91 16 13 H 0.06 1.20 7.80 -2.39 -0.02 1.18 16 14 C -0.14 -2.53 8.93 71.98 0.64 -1.89 16 15 N -0.67 -20.32 5.13 -495.62 -2.54 -22.87 16 16 C 0.07 2.21 5.96 85.56 0.51 2.72 16 17 C 0.44 20.80 7.82 87.66 0.69 21.48 16 18 O -0.62 -34.60 15.78 -3.10 -0.05 -34.65 16 19 N -0.57 -29.47 5.29 -306.97 -1.62 -31.09 16 20 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 24 Si 0.99 43.25 29.55 68.60 2.03 45.27 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 C 0.09 1.24 11.50 85.65 0.99 2.22 16 29 N -0.32 -5.34 12.33 -56.28 -0.69 -6.04 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.13 -0.01 8.06 -2.39 -0.02 -0.03 16 35 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.41 4.96 5.53 -92.71 -0.51 4.44 16 37 H 0.06 1.78 7.17 -2.39 -0.02 1.76 16 38 H 0.07 1.55 6.56 -2.39 -0.02 1.53 16 39 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.08 0.89 6.29 -2.39 -0.02 0.88 16 41 H 0.06 1.10 7.45 -2.39 -0.02 1.08 16 42 H 0.06 1.23 6.56 -2.39 -0.02 1.22 16 43 H 0.34 11.44 7.62 -89.70 -0.68 10.76 16 44 H 0.11 3.18 7.44 -2.39 -0.02 3.17 16 45 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 46 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 47 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 48 H 0.22 1.56 7.50 -2.91 -0.02 1.54 16 Total: -1.00 -78.36 399.23 0.76 -77.60 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -0.92 Total: 39.76 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 7.82 Total: 20.91 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -8.06 Total: -130.52 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -0.12 Total: -53.02 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -78.36 0.76 -77.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.360 kcal (2) G-P(sol) polarization free energy of solvation -78.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds