Wall clock time and date at job start Tue Mar 31 2020 20:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47056 * 2 1 4 4 C 1.34252 * 125.75495 * 125.30912 * 3 2 1 5 5 C 1.38042 * 107.41624 * 180.10693 * 4 3 2 6 6 C 1.47436 * 126.41484 * 179.87036 * 5 4 3 7 7 O 1.21602 * 119.99809 * 359.71392 * 6 5 4 8 8 N 1.34775 * 119.99704 * 179.70945 * 6 5 4 9 9 C 1.46506 * 119.99693 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46660 * 35.00912 * 9 8 6 11 11 C 1.52997 * 109.47289 * 275.00198 * 9 8 6 12 12 C 1.52999 * 109.46684 * 155.00124 * 9 8 6 13 13 H 1.09001 * 109.47362 * 60.00788 * 12 9 8 14 14 C 1.53002 * 109.47628 * 300.00177 * 12 9 8 15 15 N 1.46906 * 109.46897 * 180.02562 * 12 9 8 16 16 C 1.46904 * 111.00071 * 205.00189 * 15 12 9 17 17 C 1.50701 * 109.46760 * 180.02562 * 16 15 12 18 18 O 1.21286 * 120.00344 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99777 * 180.02562 * 17 16 15 20 20 C 1.37090 * 120.00393 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99835 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00469 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99565 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00210 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46914 * 89.99978 * 24 22 20 26 26 H 1.48497 * 109.47500 * 210.00206 * 24 22 20 27 27 H 1.48503 * 109.47335 * 330.00305 * 24 22 20 28 28 C 1.41298 * 107.17137 * 359.60588 * 5 4 3 29 29 N 1.30445 * 108.01678 * 0.24258 * 28 5 4 30 30 H 1.09001 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47232 * 300.00102 * 1 2 3 32 32 H 1.09005 * 109.46793 * 60.00862 * 1 2 3 33 33 H 1.08993 * 109.47274 * 239.99411 * 2 1 3 34 34 H 1.09005 * 109.46900 * 119.99917 * 2 1 3 35 35 H 1.07999 * 126.29327 * 359.95806 * 4 3 2 36 36 H 0.97000 * 120.00190 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.46832 * 60.00146 * 11 9 8 39 39 H 1.09004 * 109.47261 * 300.00128 * 11 9 8 40 40 H 1.09002 * 109.46838 * 59.99718 * 14 12 9 41 41 H 1.09001 * 109.47142 * 180.02562 * 14 12 9 42 42 H 1.08996 * 109.46698 * 300.00222 * 14 12 9 43 43 H 1.00897 * 110.99665 * 328.95675 * 15 12 9 44 44 H 1.08999 * 109.46647 * 300.00163 * 16 15 12 45 45 H 1.08996 * 109.46868 * 59.99743 * 16 15 12 46 46 H 0.97002 * 119.99836 * 0.02562 * 19 17 16 47 47 H 0.97000 * 119.99806 * 179.97438 * 23 22 20 48 48 H 1.07997 * 125.98610 * 180.24017 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8735 1.9109 0.8891 5 6 3.0717 3.2306 0.5361 6 6 3.9339 4.2029 1.2325 7 8 4.5519 3.8665 2.2242 8 7 4.0373 5.4645 0.7697 9 6 4.8936 6.4308 1.4621 10 1 5.7708 5.9198 1.8590 11 6 4.1134 7.0722 2.6112 12 6 5.3370 7.5156 0.4785 13 1 4.4599 8.0267 0.0815 14 6 6.1173 6.8742 -0.6708 15 7 6.1962 8.4842 1.1725 16 6 6.1627 9.7917 0.5036 17 6 7.0543 10.7566 1.2420 18 8 7.6579 10.3913 2.2285 19 7 7.1802 12.0259 0.8066 20 6 7.9916 12.9036 1.4778 21 1 8.5298 12.5780 2.3558 22 6 8.1218 14.2121 1.0286 23 7 7.4667 14.6083 -0.0394 24 14 9.2270 15.4081 1.9437 25 1 10.6002 15.3416 1.3825 26 1 8.6967 16.7869 1.7926 27 1 9.2627 15.0466 3.3836 28 6 2.2983 3.4736 -0.6212 29 7 1.6772 2.3690 -0.9306 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.3219 1.3993 1.7279 36 1 3.5441 5.7329 -0.0212 37 1 4.7507 7.7908 3.1266 38 1 3.7975 6.2993 3.3119 39 1 3.2362 7.5832 2.2142 40 1 5.4801 6.1553 -1.1858 41 1 6.4335 7.6472 -1.3712 42 1 6.9944 6.3633 -0.2737 43 1 5.9355 8.5680 2.1436 44 1 6.5150 9.6841 -0.5222 45 1 5.1409 10.1713 0.4990 46 1 6.6966 12.3184 0.0182 47 1 7.5573 15.5218 -0.3527 48 1 2.2329 4.4097 -1.1558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717402546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:15 Heat of formation + Delta-G solvation = 1.448423 kcal Electronic energy + Delta-G solvation = -28205.611680 eV Core-core repulsion = 24104.202027 eV Total energy + Delta-G solvation = -4101.409653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76360 -39.70880 -38.36949 -37.13067 -35.03810 -34.36705 -33.74935 -31.34684 -31.05854 -30.94011 -29.88166 -29.42961 -26.37006 -24.76006 -24.23087 -23.76248 -22.41991 -21.13000 -20.43905 -20.13218 -19.27082 -18.28275 -17.87561 -16.66264 -16.36127 -16.08945 -15.88730 -15.37652 -15.10972 -14.84893 -14.67580 -14.45902 -14.22540 -13.87456 -13.84281 -13.61557 -13.48468 -13.20243 -13.06704 -12.88191 -12.68968 -12.41838 -12.30264 -12.06471 -11.87006 -11.64267 -11.54510 -11.40489 -11.37147 -11.24725 -11.02116 -10.56125 -10.37582 -10.19729 -10.02617 -9.98991 -9.48859 -9.27085 -8.97167 -8.42661 -8.06539 -7.93812 -6.39829 -3.80413 1.19074 1.83321 1.87117 3.05038 3.19812 3.28317 3.29981 3.34409 3.88694 3.93332 4.14268 4.30442 4.34062 4.38654 4.42558 4.57663 4.62515 4.80935 4.90940 4.93365 5.03762 5.16936 5.19579 5.20503 5.27493 5.33305 5.43194 5.51380 5.56737 5.70475 5.73160 5.82937 5.93202 5.99956 6.00873 6.04620 6.19907 6.26323 6.38219 6.38552 6.42582 7.11519 7.23196 7.43099 7.57315 7.68077 8.08545 8.17456 8.63513 9.20117 9.56495 10.08115 10.77947 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039419 B = 0.001621 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.146026 B =17272.975858 C =17587.071595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.128 3.872 5 C -0.293 4.293 6 C 0.597 3.403 7 O -0.548 6.548 8 N -0.717 5.717 9 C 0.143 3.857 10 H 0.100 0.900 11 C -0.170 4.170 12 C 0.078 3.922 13 H 0.046 0.954 14 C -0.139 4.139 15 N -0.661 5.661 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.081 3.919 29 N -0.295 5.295 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.188 0.812 36 H 0.397 0.603 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.352 0.648 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.061 -26.825 -4.090 31.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.140 5.140 4 C -0.024 4.024 5 C -0.308 4.308 6 C 0.384 3.616 7 O -0.426 6.426 8 N -0.368 5.368 9 C 0.039 3.961 10 H 0.118 0.882 11 C -0.229 4.229 12 C -0.033 4.033 13 H 0.064 0.936 14 C -0.197 4.197 15 N -0.297 5.297 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.107 4.107 29 N -0.115 5.115 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.205 0.795 36 H 0.231 0.769 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.174 0.826 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -15.505 -28.032 -3.924 32.274 hybrid contribution -0.346 1.771 0.218 1.818 sum -15.851 -26.261 -3.706 30.897 Atomic orbital electron populations 1.22061 0.93316 1.03196 1.03816 1.21850 0.96503 0.76808 1.04368 1.48658 1.34106 1.10678 1.20606 1.23007 0.91400 0.93621 0.94362 1.20280 1.11620 0.95419 1.03467 1.17184 0.80148 0.81102 0.83154 1.90788 1.46769 1.78827 1.26248 1.45738 1.48765 1.10567 1.31754 1.21052 0.93878 0.89188 0.92016 0.88199 1.22263 1.00580 1.01354 0.98655 1.21739 0.94385 0.92675 0.94514 0.93590 1.21805 1.00536 1.00196 0.97204 1.60177 1.55187 1.07570 1.06741 1.21720 0.98173 0.89129 0.99080 1.19803 0.86806 0.83218 0.87551 1.90529 1.50299 1.77409 1.28359 1.41855 1.41985 1.08552 1.27675 1.19713 1.22142 0.90550 1.10466 0.87908 1.25251 0.98168 0.97900 0.96600 1.69612 1.42343 1.18939 1.23471 0.85859 0.79666 0.78971 0.79801 1.20403 1.20972 1.19426 1.24076 0.94164 0.97479 0.95005 1.77141 1.23875 0.97134 1.13331 0.90392 0.91913 0.90893 0.89217 0.88152 0.79531 0.76894 0.90863 0.91670 0.92542 0.92877 0.92364 0.91744 0.82577 0.89543 0.93834 0.77483 0.91914 0.79405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.09 37.16 0.37 -0.21 16 2 C 0.13 0.46 7.21 -4.04 -0.03 0.43 16 3 N -0.36 -2.63 3.65 -60.81 -0.22 -2.85 16 4 C 0.13 1.02 11.25 -16.57 -0.19 0.83 16 5 C -0.29 -2.74 6.13 -105.06 -0.64 -3.38 16 6 C 0.60 6.83 7.78 -12.52 -0.10 6.73 16 7 O -0.55 -8.28 16.56 5.28 0.09 -8.20 16 8 N -0.72 -6.87 4.37 -54.88 -0.24 -7.11 16 9 C 0.14 1.66 2.29 -67.93 -0.16 1.51 16 10 H 0.10 1.41 7.58 -51.93 -0.39 1.02 16 11 C -0.17 -1.95 9.25 37.16 0.34 -1.61 16 12 C 0.08 0.93 2.28 -67.71 -0.15 0.77 16 13 H 0.05 0.50 7.80 -51.93 -0.41 0.09 16 14 C -0.14 -1.59 9.26 37.16 0.34 -1.24 16 15 N -0.66 -10.56 5.93 -107.98 -0.64 -11.20 16 16 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 17 C 0.44 10.41 7.82 -10.98 -0.09 10.33 16 18 O -0.58 -15.89 15.78 5.55 0.09 -15.80 16 19 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 20 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.08 0.65 11.50 -16.98 -0.20 0.45 16 29 N -0.30 -2.65 12.33 30.86 0.38 -2.27 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.10 0.13 8.06 -51.93 -0.42 -0.29 16 35 H 0.19 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.40 2.74 7.34 -40.82 -0.30 2.44 16 37 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.48 7.45 -51.93 -0.39 0.09 16 41 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.35 5.84 5.87 -39.29 -0.23 5.61 16 44 H 0.09 1.39 7.43 -51.93 -0.39 1.01 16 45 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 46 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.19 0.91 7.50 -52.49 -0.39 0.52 16 LS Contribution 403.00 15.07 6.07 6.07 Total: -1.00 -35.62 403.00 -6.84 -42.46 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -7.26 Total: 13.51 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.76 Total: 7.45 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.06 Total: -61.61 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.17 Total: -24.00 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.62 -6.84 -42.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.909 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds