Wall clock time and date at job start Tue Mar 31 2020 20:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47056 * 2 1 4 4 C 1.34252 * 125.75495 * 125.30912 * 3 2 1 5 5 C 1.38042 * 107.41624 * 180.10693 * 4 3 2 6 6 C 1.47436 * 126.41484 * 179.87036 * 5 4 3 7 7 O 1.21602 * 119.99809 * 359.71392 * 6 5 4 8 8 N 1.34775 * 119.99704 * 179.70945 * 6 5 4 9 9 C 1.46506 * 119.99693 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46660 * 35.00912 * 9 8 6 11 11 C 1.52997 * 109.47289 * 275.00198 * 9 8 6 12 12 C 1.52999 * 109.46684 * 155.00124 * 9 8 6 13 13 H 1.09001 * 109.47362 * 60.00788 * 12 9 8 14 14 C 1.53002 * 109.47628 * 300.00177 * 12 9 8 15 15 N 1.46906 * 109.46897 * 180.02562 * 12 9 8 16 16 C 1.46904 * 111.00071 * 205.00189 * 15 12 9 17 17 C 1.50701 * 109.46760 * 180.02562 * 16 15 12 18 18 O 1.21286 * 120.00344 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99777 * 180.02562 * 17 16 15 20 20 C 1.37090 * 120.00393 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99835 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00469 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99565 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00210 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46914 * 89.99978 * 24 22 20 26 26 H 1.48497 * 109.47500 * 210.00206 * 24 22 20 27 27 H 1.48503 * 109.47335 * 330.00305 * 24 22 20 28 28 C 1.41298 * 107.17137 * 359.60588 * 5 4 3 29 29 N 1.30445 * 108.01678 * 0.24258 * 28 5 4 30 30 H 1.09001 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47232 * 300.00102 * 1 2 3 32 32 H 1.09005 * 109.46793 * 60.00862 * 1 2 3 33 33 H 1.08993 * 109.47274 * 239.99411 * 2 1 3 34 34 H 1.09005 * 109.46900 * 119.99917 * 2 1 3 35 35 H 1.07999 * 126.29327 * 359.95806 * 4 3 2 36 36 H 0.97000 * 120.00190 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.46832 * 60.00146 * 11 9 8 39 39 H 1.09004 * 109.47261 * 300.00128 * 11 9 8 40 40 H 1.09002 * 109.46838 * 59.99718 * 14 12 9 41 41 H 1.09001 * 109.47142 * 180.02562 * 14 12 9 42 42 H 1.08996 * 109.46698 * 300.00222 * 14 12 9 43 43 H 1.00897 * 110.99665 * 328.95675 * 15 12 9 44 44 H 1.08999 * 109.46647 * 300.00163 * 16 15 12 45 45 H 1.08996 * 109.46868 * 59.99743 * 16 15 12 46 46 H 0.97002 * 119.99836 * 0.02562 * 19 17 16 47 47 H 0.97000 * 119.99806 * 179.97438 * 23 22 20 48 48 H 1.07997 * 125.98610 * 180.24017 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8735 1.9109 0.8891 5 6 3.0717 3.2306 0.5361 6 6 3.9339 4.2029 1.2325 7 8 4.5519 3.8665 2.2242 8 7 4.0373 5.4645 0.7697 9 6 4.8936 6.4308 1.4621 10 1 5.7708 5.9198 1.8590 11 6 4.1134 7.0722 2.6112 12 6 5.3370 7.5156 0.4785 13 1 4.4599 8.0267 0.0815 14 6 6.1173 6.8742 -0.6708 15 7 6.1962 8.4842 1.1725 16 6 6.1627 9.7917 0.5036 17 6 7.0543 10.7566 1.2420 18 8 7.6579 10.3913 2.2285 19 7 7.1802 12.0259 0.8066 20 6 7.9916 12.9036 1.4778 21 1 8.5298 12.5780 2.3558 22 6 8.1218 14.2121 1.0286 23 7 7.4667 14.6083 -0.0394 24 14 9.2270 15.4081 1.9437 25 1 10.6002 15.3416 1.3825 26 1 8.6967 16.7869 1.7926 27 1 9.2627 15.0466 3.3836 28 6 2.2983 3.4736 -0.6212 29 7 1.6772 2.3690 -0.9306 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.3219 1.3993 1.7279 36 1 3.5441 5.7329 -0.0212 37 1 4.7507 7.7908 3.1266 38 1 3.7975 6.2993 3.3119 39 1 3.2362 7.5832 2.2142 40 1 5.4801 6.1553 -1.1858 41 1 6.4335 7.6472 -1.3712 42 1 6.9944 6.3633 -0.2737 43 1 5.9355 8.5680 2.1436 44 1 6.5150 9.6841 -0.5222 45 1 5.1409 10.1713 0.4990 46 1 6.6966 12.3184 0.0182 47 1 7.5573 15.5218 -0.3527 48 1 2.2329 4.4097 -1.1558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717402546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:14 Heat of formation + Delta-G solvation = -26.104589 kcal Electronic energy + Delta-G solvation = -28206.806468 eV Core-core repulsion = 24104.202027 eV Total energy + Delta-G solvation = -4102.604441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36449 -40.66829 -40.06555 -38.34079 -36.01852 -35.50864 -35.17713 -33.25919 -32.14378 -31.50945 -30.86834 -30.11296 -27.99469 -25.89012 -25.35828 -24.48058 -23.30731 -21.72461 -21.35672 -21.05404 -20.92698 -19.90562 -18.98325 -17.84971 -17.37202 -17.11192 -16.68081 -16.60291 -16.39212 -15.91057 -15.82847 -15.52100 -15.39447 -15.22569 -14.78845 -14.71034 -14.45418 -14.13947 -14.07884 -13.75849 -13.51505 -13.46515 -13.35490 -13.09239 -12.97955 -12.88335 -12.63068 -12.54872 -12.45712 -12.39698 -12.28099 -12.10886 -11.89511 -11.56780 -11.48844 -10.89932 -10.58363 -10.31660 -10.15796 -9.99351 -9.63276 -9.31380 -8.45031 -5.93369 0.55407 1.19457 1.39258 1.40290 1.43136 1.55596 2.07655 2.18700 2.32886 2.50406 3.02518 3.22623 3.46832 3.54670 3.63878 3.80434 4.01484 4.02224 4.07583 4.13053 4.22680 4.34230 4.35743 4.42847 4.47447 4.49793 4.60493 4.63315 4.72879 4.77495 4.80821 4.89198 4.90979 5.02319 5.06673 5.21443 5.24177 5.42548 5.43703 5.44393 5.52709 5.89098 5.92737 6.13842 6.41601 6.51669 6.62512 6.68377 7.14876 7.34962 7.58674 8.14476 8.72280 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039419 B = 0.001621 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.146026 B =17272.975858 C =17587.071595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.358 5.358 4 C 0.129 3.871 5 C -0.315 4.315 6 C 0.597 3.403 7 O -0.593 6.593 8 N -0.703 5.703 9 C 0.152 3.848 10 H 0.070 0.930 11 C -0.165 4.165 12 C 0.084 3.916 13 H 0.073 0.927 14 C -0.137 4.137 15 N -0.679 5.679 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.086 3.914 29 N -0.321 5.321 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.203 0.797 36 H 0.413 0.587 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.346 0.654 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.439 -27.387 -5.433 32.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.136 5.136 4 C -0.024 4.024 5 C -0.330 4.330 6 C 0.386 3.614 7 O -0.474 6.474 8 N -0.354 5.354 9 C 0.047 3.953 10 H 0.088 0.912 11 C -0.223 4.223 12 C -0.026 4.026 13 H 0.091 0.909 14 C -0.195 4.195 15 N -0.315 5.315 16 C -0.065 4.065 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.101 4.101 29 N -0.141 5.141 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.220 0.780 36 H 0.251 0.749 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.168 0.832 44 H 0.123 0.877 45 H 0.090 0.910 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -16.935 -28.603 -5.340 33.667 hybrid contribution 0.043 1.827 0.632 1.934 sum -16.892 -26.776 -4.708 32.007 Atomic orbital electron populations 1.22018 0.93223 1.04227 1.02373 1.22232 0.96589 0.75339 1.06234 1.48968 1.33411 1.11488 1.19775 1.23330 0.90964 0.93515 0.94557 1.20204 1.12623 0.95676 1.04534 1.17485 0.79714 0.81597 0.82588 1.90765 1.48728 1.79622 1.28311 1.45526 1.48194 1.09755 1.31959 1.20781 0.93243 0.89136 0.92169 0.91171 1.22197 1.00909 1.00819 0.98390 1.21768 0.94764 0.91854 0.94223 0.90932 1.21806 1.00236 1.00556 0.96916 1.60167 1.57148 1.07469 1.06756 1.21578 0.97943 0.88252 0.98730 1.20920 0.86356 0.83318 0.86978 1.90499 1.52041 1.78160 1.30385 1.41910 1.42092 1.09100 1.27856 1.19666 1.23874 0.92030 1.10885 0.90445 1.25997 0.99073 0.98788 0.97231 1.69665 1.42723 1.19612 1.23986 0.84951 0.78078 0.77202 0.78244 1.19744 1.19473 1.19876 1.24487 0.93023 0.98258 0.94369 1.77110 1.24743 0.97835 1.14399 0.88143 0.92884 0.92686 0.88250 0.85441 0.78000 0.74947 0.91979 0.92744 0.90774 0.90192 0.92400 0.93823 0.83231 0.87666 0.91038 0.76900 0.91317 0.76769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 10.09 71.98 0.73 -0.17 16 2 C 0.11 0.62 7.21 86.38 0.62 1.24 16 3 N -0.36 -4.67 3.65 -346.31 -1.26 -5.93 16 4 C 0.13 1.90 11.25 84.28 0.95 2.85 16 5 C -0.32 -5.53 6.13 -20.15 -0.12 -5.65 16 6 C 0.60 13.32 7.78 86.67 0.67 13.99 16 7 O -0.59 -18.24 16.56 -4.04 -0.07 -18.31 16 8 N -0.70 -12.43 4.37 -445.79 -1.95 -14.38 16 9 C 0.15 3.43 2.29 44.99 0.10 3.53 16 10 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 11 C -0.16 -3.70 9.25 71.98 0.67 -3.04 16 12 C 0.08 1.84 2.28 44.91 0.10 1.94 16 13 H 0.07 1.28 7.80 -2.39 -0.02 1.26 16 14 C -0.14 -2.86 9.26 71.98 0.67 -2.19 16 15 N -0.68 -21.16 5.93 -495.55 -2.94 -24.10 16 16 C 0.07 2.23 5.97 85.56 0.51 2.74 16 17 C 0.44 20.76 7.82 87.66 0.69 21.44 16 18 O -0.62 -35.01 15.78 -3.05 -0.05 -35.06 16 19 N -0.57 -29.28 5.29 -306.99 -1.62 -30.90 16 20 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 23 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 24 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 C 0.09 1.22 11.50 85.65 0.99 2.21 16 29 N -0.32 -5.30 12.33 -56.27 -0.69 -5.99 16 30 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.13 -0.01 8.06 -2.38 -0.02 -0.03 16 35 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.41 4.55 7.34 -92.71 -0.68 3.87 16 37 H 0.06 1.54 6.21 -2.39 -0.01 1.53 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.08 1.22 7.45 -2.39 -0.02 1.20 16 41 H 0.06 1.22 7.45 -2.39 -0.02 1.20 16 42 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.35 11.49 5.87 -89.70 -0.53 10.97 16 44 H 0.11 3.14 7.43 -2.39 -0.02 3.12 16 45 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 46 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 47 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 48 H 0.22 1.48 7.50 -2.91 -0.02 1.45 16 Total: -1.00 -79.17 403.00 0.64 -78.54 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: -0.93 Total: 39.61 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 7.85 Total: 20.46 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -8.19 Total: -130.40 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.11 Total: -53.37 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -79.17 0.64 -78.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717402546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.432 kcal (2) G-P(sol) polarization free energy of solvation -79.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds