Wall clock time and date at job start Tue Mar 31 2020 20:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.46905 * 2 1 4 4 C 1.35398 * 126.43622 * 265.02491 * 3 2 1 5 5 C 1.35564 * 107.15817 * 179.75451 * 4 3 2 6 6 N 1.33098 * 108.35200 * 0.24438 * 5 4 3 7 7 C 1.31617 * 109.09581 * 359.97438 * 6 5 4 8 8 C 1.47401 * 125.86874 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00430 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99884 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00107 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47087 * 34.99734 * 11 10 8 13 13 C 1.53005 * 109.46954 * 274.99536 * 11 10 8 14 14 C 1.53002 * 109.47069 * 155.00347 * 11 10 8 15 15 H 1.09002 * 109.46769 * 294.99719 * 14 11 10 16 16 C 1.52998 * 109.47525 * 54.99666 * 14 11 10 17 17 N 1.46897 * 109.46826 * 175.00136 * 14 11 10 18 18 C 1.46900 * 110.99795 * 154.99821 * 17 14 11 19 19 C 1.50705 * 109.47179 * 179.97438 * 18 17 14 20 20 O 1.21292 * 119.99886 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00035 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99819 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00561 * 0.02562 * 22 21 19 24 24 C 1.38957 * 120.00259 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99587 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00499 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.46976 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47413 * 119.99744 * 26 24 22 29 29 H 1.48500 * 109.47142 * 240.00167 * 26 24 22 30 30 H 1.09008 * 109.46666 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47175 * 299.99772 * 1 2 3 32 32 H 1.08998 * 109.47292 * 60.00324 * 1 2 3 33 33 H 1.09000 * 109.47625 * 240.00041 * 2 1 3 34 34 H 1.08998 * 109.47292 * 119.99676 * 2 1 3 35 35 H 1.08002 * 126.42435 * 0.02574 * 4 3 2 36 36 H 1.08001 * 125.82583 * 180.25796 * 5 4 3 37 37 H 0.97000 * 120.00118 * 359.97438 * 10 8 7 38 38 H 1.08997 * 109.47292 * 300.00555 * 13 11 10 39 39 H 1.09007 * 109.46442 * 60.00414 * 13 11 10 40 40 H 1.08998 * 109.46975 * 179.97438 * 13 11 10 41 41 H 1.09003 * 109.47057 * 299.99955 * 16 14 11 42 42 H 1.09002 * 109.47053 * 60.00227 * 16 14 11 43 43 H 1.08999 * 109.46835 * 180.02562 * 16 14 11 44 44 H 1.00905 * 110.99988 * 278.94748 * 17 14 11 45 45 H 1.09003 * 109.47525 * 299.99217 * 18 17 14 46 46 H 1.08997 * 109.47660 * 59.99837 * 18 17 14 47 47 H 0.97003 * 120.00399 * 359.97438 * 21 19 18 48 48 H 0.96991 * 119.99919 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3754 2.1080 -1.0852 5 6 2.7601 3.3292 -0.6398 6 7 2.6461 3.3467 0.6862 7 6 2.2015 2.1776 1.0956 8 6 1.9406 1.7945 2.4948 9 8 1.5284 0.6802 2.7535 10 7 2.1591 2.6794 3.4877 11 6 1.8993 2.2989 4.8784 12 1 2.1455 1.2465 5.0192 13 6 0.4208 2.5245 5.2011 14 6 2.7608 3.1535 5.8104 15 1 3.8135 2.9271 5.6413 16 6 2.5056 4.6349 5.5253 17 7 2.4142 2.8567 7.2066 18 6 3.5380 3.1580 8.1034 19 6 3.1458 2.8423 9.5239 20 8 2.0388 2.4093 9.7654 21 7 4.0247 3.0420 10.5259 22 6 3.6677 2.7552 11.8181 23 1 2.6823 2.3689 12.0332 24 6 4.5739 2.9606 12.8513 25 7 5.7731 3.4302 12.5896 26 14 4.0878 2.5692 14.6119 27 1 2.6939 2.0577 14.6385 28 1 5.0045 1.5381 15.1610 29 1 4.1783 3.8013 15.4359 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3534 1.7782 -2.1134 36 1 3.1008 4.1483 -1.2558 37 1 2.4883 3.5682 3.2815 38 1 0.1746 3.5769 5.0602 39 1 -0.1929 1.9156 4.5371 40 1 0.2274 2.2410 6.2357 41 1 2.7628 4.8551 4.4892 42 1 1.4528 4.8613 5.6944 43 1 3.1197 5.2436 6.1890 44 1 1.5837 3.3564 7.4872 45 1 4.4001 2.5536 7.8214 46 1 3.7932 4.2147 8.0238 47 1 4.9098 3.3886 10.3329 48 1 6.4056 3.5739 13.3108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717407619.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:28 Heat of formation + Delta-G solvation = -9.647782 kcal Electronic energy + Delta-G solvation = -28796.917882 eV Core-core repulsion = 24695.027061 eV Total energy + Delta-G solvation = -4101.890821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62501 -39.86852 -38.43457 -37.31539 -35.52857 -34.40224 -33.77284 -31.51099 -31.14237 -30.59287 -29.72882 -28.95140 -26.38367 -25.10406 -24.41302 -23.90421 -22.87242 -21.73596 -20.27198 -19.79426 -19.29791 -18.18949 -17.87556 -16.77567 -16.27209 -16.05465 -15.83426 -15.51983 -15.03216 -14.87515 -14.71985 -14.49882 -14.22908 -14.16405 -13.92460 -13.87869 -13.71188 -13.26647 -13.09532 -12.92171 -12.48727 -12.33273 -12.21068 -12.13558 -11.89560 -11.78020 -11.53804 -11.39504 -11.05498 -10.93825 -10.84023 -10.57697 -10.35345 -10.33169 -10.21148 -10.16704 -9.50748 -9.31728 -8.86840 -8.46156 -8.06334 -7.94637 -6.40623 -3.81248 1.07152 2.08569 2.29895 3.00264 3.17454 3.17822 3.28027 3.35440 3.92188 4.02020 4.13872 4.23946 4.34672 4.43038 4.56458 4.75245 4.81656 4.83781 4.91236 5.04666 5.12181 5.20790 5.22645 5.28120 5.31269 5.39006 5.42845 5.62928 5.67384 5.71061 5.80791 5.83373 5.88247 5.97816 6.01246 6.10892 6.23069 6.27582 6.35768 6.42032 6.54890 7.14604 7.21332 7.54457 7.56786 7.64243 7.94534 8.07840 8.62441 9.19292 9.55713 10.07001 10.77221 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027615 B = 0.001821 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.701199 B =15373.298685 C =15779.759815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.412 5.412 4 C -0.031 4.031 5 C -0.028 4.028 6 N -0.447 5.447 7 C 0.141 3.859 8 C 0.607 3.393 9 O -0.537 6.537 10 N -0.699 5.699 11 C 0.155 3.845 12 H 0.099 0.901 13 C -0.163 4.163 14 C 0.078 3.922 15 H 0.084 0.916 16 C -0.191 4.191 17 N -0.658 5.658 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.409 0.591 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.353 0.647 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 -0.501 -29.387 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.093 5.093 4 C -0.170 4.170 5 C -0.182 4.182 6 N -0.169 5.169 7 C -0.119 4.119 8 C 0.390 3.610 9 O -0.413 6.413 10 N -0.352 5.352 11 C 0.051 3.949 12 H 0.117 0.883 13 C -0.221 4.221 14 C -0.033 4.033 15 H 0.102 0.898 16 C -0.250 4.250 17 N -0.291 5.291 18 C -0.082 4.082 19 C 0.227 3.773 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.199 0.801 36 H 0.195 0.805 37 H 0.246 0.754 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.174 0.826 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.787 -1.769 -28.315 28.955 hybrid contribution 0.506 0.895 -0.110 1.034 sum -5.281 -0.874 -28.425 28.925 Atomic orbital electron populations 1.22064 0.93428 1.03551 1.03003 1.22161 0.96431 0.78658 1.05478 1.45296 1.44912 1.12992 1.06096 1.22933 1.06834 0.94056 0.93134 1.22426 1.07291 0.97459 0.91003 1.70194 1.15405 1.18615 1.12693 1.22714 1.10250 0.88533 0.90372 1.16430 0.77956 0.84603 0.81963 1.90814 1.46506 1.20521 1.83450 1.45896 1.66215 1.16869 1.06221 1.20981 0.95545 1.00678 0.77728 0.88299 1.22186 0.95076 1.01489 1.03393 1.21710 0.99417 0.92714 0.89499 0.89802 1.22627 1.02800 0.97552 1.01983 1.60021 1.06405 1.63388 0.99261 1.21709 0.94399 0.99325 0.92727 1.19799 0.86583 0.85017 0.85947 1.90526 1.22051 1.50003 1.84086 1.41867 1.14729 1.57302 1.06187 1.19756 1.00933 1.40300 0.81774 0.87848 1.25270 0.95105 0.97231 1.00436 1.69619 1.05623 1.45407 1.33683 0.85797 0.78848 0.77978 0.81705 1.19212 1.20762 1.20803 0.90207 0.91263 0.92328 0.88969 0.87031 0.80098 0.80545 0.75354 0.92671 0.92586 0.89768 0.92160 0.91598 0.91870 0.82621 0.89526 0.93670 0.77465 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 10.24 37.16 0.38 -0.69 16 2 C 0.09 0.65 6.19 -4.04 -0.02 0.63 16 3 N -0.41 -3.68 2.76 -114.58 -0.32 -3.99 16 4 C -0.03 -0.22 11.53 -16.93 -0.20 -0.41 16 5 C -0.03 -0.24 11.85 -17.96 -0.21 -0.45 16 6 N -0.45 -4.94 10.89 -11.26 -0.12 -5.07 16 7 C 0.14 1.59 7.79 -154.52 -1.20 0.39 16 8 C 0.61 7.51 7.78 -12.53 -0.10 7.41 16 9 O -0.54 -7.60 14.21 5.28 0.08 -7.53 16 10 N -0.70 -7.73 4.99 -54.89 -0.27 -8.01 16 11 C 0.15 1.87 2.63 -67.93 -0.18 1.69 16 12 H 0.10 1.41 7.58 -51.93 -0.39 1.01 16 13 C -0.16 -1.94 8.86 37.16 0.33 -1.61 16 14 C 0.08 0.93 2.64 -67.71 -0.18 0.75 16 15 H 0.08 0.99 7.80 -51.93 -0.40 0.59 16 16 C -0.19 -1.92 8.68 37.16 0.32 -1.60 16 17 N -0.66 -10.16 5.23 -107.99 -0.56 -10.73 16 18 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 19 C 0.44 10.33 7.82 -10.98 -0.09 10.24 16 20 O -0.58 -15.70 15.78 5.55 0.09 -15.62 16 21 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 22 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 25 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 26 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 30 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.38 8.13 -51.93 -0.42 -0.05 16 34 H 0.11 0.97 6.62 -51.93 -0.34 0.62 16 35 H 0.18 0.57 8.06 -52.49 -0.42 0.14 16 36 H 0.18 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.41 4.07 6.26 -40.82 -0.26 3.82 16 38 H 0.05 0.59 6.56 -51.93 -0.34 0.24 16 39 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 40 H 0.08 1.10 7.13 -51.93 -0.37 0.73 16 41 H 0.06 0.52 6.29 -51.93 -0.33 0.19 16 42 H 0.07 0.65 6.55 -51.93 -0.34 0.31 16 43 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 44 H 0.35 5.62 7.39 -39.29 -0.29 5.33 16 45 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 46 H 0.05 0.69 7.44 -51.93 -0.39 0.31 16 47 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 395.26 15.07 5.96 5.96 Total: -1.00 -33.54 395.26 -7.97 -41.51 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -7.04 Total: 16.37 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -1.41 Total: 9.19 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.61 Total: -65.99 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.16 Total: -23.14 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.54 -7.97 -41.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717407619.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.860 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds