Wall clock time and date at job start Tue Mar 31 2020 20:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.46905 * 2 1 4 4 C 1.35398 * 126.43622 * 265.02491 * 3 2 1 5 5 C 1.35564 * 107.15817 * 179.75451 * 4 3 2 6 6 N 1.33098 * 108.35200 * 0.24438 * 5 4 3 7 7 C 1.31617 * 109.09581 * 359.97438 * 6 5 4 8 8 C 1.47401 * 125.86874 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00430 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99884 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00107 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47087 * 34.99734 * 11 10 8 13 13 C 1.53005 * 109.46954 * 274.99536 * 11 10 8 14 14 C 1.53002 * 109.47069 * 155.00347 * 11 10 8 15 15 H 1.09002 * 109.46769 * 294.99719 * 14 11 10 16 16 C 1.52998 * 109.47525 * 54.99666 * 14 11 10 17 17 N 1.46897 * 109.46826 * 175.00136 * 14 11 10 18 18 C 1.46900 * 110.99795 * 154.99821 * 17 14 11 19 19 C 1.50705 * 109.47179 * 179.97438 * 18 17 14 20 20 O 1.21292 * 119.99886 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00035 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99819 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00561 * 0.02562 * 22 21 19 24 24 C 1.38957 * 120.00259 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99587 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00499 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.46976 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47413 * 119.99744 * 26 24 22 29 29 H 1.48500 * 109.47142 * 240.00167 * 26 24 22 30 30 H 1.09008 * 109.46666 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47175 * 299.99772 * 1 2 3 32 32 H 1.08998 * 109.47292 * 60.00324 * 1 2 3 33 33 H 1.09000 * 109.47625 * 240.00041 * 2 1 3 34 34 H 1.08998 * 109.47292 * 119.99676 * 2 1 3 35 35 H 1.08002 * 126.42435 * 0.02574 * 4 3 2 36 36 H 1.08001 * 125.82583 * 180.25796 * 5 4 3 37 37 H 0.97000 * 120.00118 * 359.97438 * 10 8 7 38 38 H 1.08997 * 109.47292 * 300.00555 * 13 11 10 39 39 H 1.09007 * 109.46442 * 60.00414 * 13 11 10 40 40 H 1.08998 * 109.46975 * 179.97438 * 13 11 10 41 41 H 1.09003 * 109.47057 * 299.99955 * 16 14 11 42 42 H 1.09002 * 109.47053 * 60.00227 * 16 14 11 43 43 H 1.08999 * 109.46835 * 180.02562 * 16 14 11 44 44 H 1.00905 * 110.99988 * 278.94748 * 17 14 11 45 45 H 1.09003 * 109.47525 * 299.99217 * 18 17 14 46 46 H 1.08997 * 109.47660 * 59.99837 * 18 17 14 47 47 H 0.97003 * 120.00399 * 359.97438 * 21 19 18 48 48 H 0.96991 * 119.99919 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3754 2.1080 -1.0852 5 6 2.7601 3.3292 -0.6398 6 7 2.6461 3.3467 0.6862 7 6 2.2015 2.1776 1.0956 8 6 1.9406 1.7945 2.4948 9 8 1.5284 0.6802 2.7535 10 7 2.1591 2.6794 3.4877 11 6 1.8993 2.2989 4.8784 12 1 2.1455 1.2465 5.0192 13 6 0.4208 2.5245 5.2011 14 6 2.7608 3.1535 5.8104 15 1 3.8135 2.9271 5.6413 16 6 2.5056 4.6349 5.5253 17 7 2.4142 2.8567 7.2066 18 6 3.5380 3.1580 8.1034 19 6 3.1458 2.8423 9.5239 20 8 2.0388 2.4093 9.7654 21 7 4.0247 3.0420 10.5259 22 6 3.6677 2.7552 11.8181 23 1 2.6823 2.3689 12.0332 24 6 4.5739 2.9606 12.8513 25 7 5.7731 3.4302 12.5896 26 14 4.0878 2.5692 14.6119 27 1 2.6939 2.0577 14.6385 28 1 5.0045 1.5381 15.1610 29 1 4.1783 3.8013 15.4359 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3534 1.7782 -2.1134 36 1 3.1008 4.1483 -1.2558 37 1 2.4883 3.5682 3.2815 38 1 0.1746 3.5769 5.0602 39 1 -0.1929 1.9156 4.5371 40 1 0.2274 2.2410 6.2357 41 1 2.7628 4.8551 4.4892 42 1 1.4528 4.8613 5.6944 43 1 3.1197 5.2436 6.1890 44 1 1.5837 3.3564 7.4872 45 1 4.4001 2.5536 7.8214 46 1 3.7932 4.2147 8.0238 47 1 4.9098 3.3886 10.3329 48 1 6.4056 3.5739 13.3108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717407619.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:27 Heat of formation + Delta-G solvation = -34.563997 kcal Electronic energy + Delta-G solvation = -28797.998330 eV Core-core repulsion = 24695.027061 eV Total energy + Delta-G solvation = -4102.971269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.28324 -40.85160 -40.12600 -38.54740 -36.26980 -35.95560 -35.24901 -33.27680 -32.40955 -31.26965 -30.54352 -29.85998 -27.98206 -26.12092 -25.72681 -24.85062 -23.75432 -22.36152 -21.17293 -21.10175 -20.74052 -19.92476 -18.94072 -17.78442 -17.44528 -17.15159 -16.95833 -16.64439 -16.39544 -16.03582 -15.76159 -15.60303 -15.57724 -15.14185 -15.06041 -14.78513 -14.64672 -14.48670 -14.12861 -13.88547 -13.59554 -13.50536 -13.33673 -13.18237 -13.07927 -13.00972 -12.87990 -12.57580 -12.39595 -12.34630 -12.11268 -11.90307 -11.85624 -11.50518 -11.36782 -11.17118 -10.84430 -10.37550 -10.23386 -10.00441 -9.50952 -9.32162 -8.46179 -5.94553 0.32909 1.36944 1.40348 1.42352 1.56438 1.63472 2.06461 2.18280 2.31101 2.36987 2.96339 3.21293 3.30455 3.54577 3.72981 3.76390 3.85015 3.89508 4.03984 4.20799 4.30157 4.33696 4.40931 4.43331 4.47337 4.48513 4.53664 4.62520 4.69074 4.73580 4.79199 4.85074 4.94999 4.97613 5.12844 5.19441 5.26290 5.38639 5.41682 5.42691 5.67267 5.88412 5.92548 6.09251 6.32772 6.40186 6.61001 6.83225 7.07120 7.13665 7.57493 8.12804 8.71457 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027615 B = 0.001821 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.701199 B =15373.298685 C =15779.759815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 N -0.413 5.413 4 C -0.009 4.009 5 C -0.047 4.047 6 N -0.464 5.464 7 C 0.102 3.898 8 C 0.603 3.397 9 O -0.564 6.564 10 N -0.690 5.690 11 C 0.163 3.837 12 H 0.073 0.927 13 C -0.155 4.155 14 C 0.085 3.915 15 H 0.090 0.910 16 C -0.185 4.185 17 N -0.672 5.672 18 C 0.066 3.934 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.094 0.906 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.226 0.774 36 H 0.203 0.797 37 H 0.415 0.585 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.350 0.650 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 0.198 -31.700 32.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.029 4.029 3 N -0.094 5.094 4 C -0.148 4.148 5 C -0.200 4.200 6 N -0.186 5.186 7 C -0.156 4.156 8 C 0.388 3.612 9 O -0.443 6.443 10 N -0.343 5.343 11 C 0.058 3.942 12 H 0.091 0.909 13 C -0.213 4.213 14 C -0.026 4.026 15 H 0.108 0.892 16 C -0.243 4.243 17 N -0.305 5.305 18 C -0.066 4.066 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.198 1.198 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.112 0.888 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.107 0.893 35 H 0.242 0.758 36 H 0.220 0.780 37 H 0.254 0.746 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.170 0.830 45 H 0.121 0.879 46 H 0.090 0.910 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.073 -1.050 -30.640 31.075 hybrid contribution 0.279 0.665 0.449 0.850 sum -4.794 -0.385 -30.191 30.571 Atomic orbital electron populations 1.22013 0.93281 1.04189 1.01931 1.22291 0.96516 0.77960 1.06159 1.45514 1.44346 1.13487 1.06042 1.23683 1.03787 0.93113 0.94231 1.23024 1.07667 0.99054 0.90297 1.70129 1.15448 1.18669 1.14396 1.22425 1.13203 0.89640 0.90302 1.16693 0.77409 0.84276 0.82849 1.90791 1.47837 1.21616 1.84052 1.45745 1.66047 1.17027 1.05528 1.20751 0.95599 0.99340 0.78526 0.90868 1.22091 0.94907 1.02210 1.02133 1.21677 0.99541 0.94101 0.87262 0.89222 1.22559 1.03039 0.95599 1.03137 1.59963 1.05798 1.64086 1.00651 1.21555 0.95177 1.01116 0.88736 1.20881 0.85550 0.83019 0.87974 1.90497 1.23759 1.51341 1.85269 1.41931 1.15261 1.57933 1.05978 1.19699 1.00564 1.42257 0.83649 0.90340 1.26042 0.94928 0.96531 1.03899 1.69676 1.06117 1.45299 1.35048 0.84870 0.78200 0.78253 0.77004 1.19840 1.19706 1.19545 0.88776 0.94522 0.91021 0.85260 0.89329 0.75791 0.78026 0.74551 0.91106 0.93570 0.91194 0.90379 0.91395 0.91674 0.83013 0.87924 0.91020 0.76952 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.24 71.98 0.74 -1.19 16 2 C 0.09 1.15 6.19 86.38 0.53 1.69 16 3 N -0.41 -6.74 2.76 -516.42 -1.42 -8.16 16 4 C -0.01 -0.10 11.53 83.52 0.96 0.87 16 5 C -0.05 -0.67 11.85 83.88 0.99 0.33 16 6 N -0.46 -9.74 10.89 -189.53 -2.06 -11.80 16 7 C 0.10 2.27 7.79 136.27 1.06 3.33 16 8 C 0.60 15.36 7.78 86.66 0.67 16.04 16 9 O -0.56 -16.91 14.21 -4.02 -0.06 -16.97 16 10 N -0.69 -15.37 4.99 -445.82 -2.22 -17.59 16 11 C 0.16 3.99 2.63 44.99 0.12 4.11 16 12 H 0.07 2.20 7.58 -2.39 -0.02 2.18 16 13 C -0.16 -3.80 8.86 71.98 0.64 -3.16 16 14 C 0.08 1.96 2.64 44.92 0.12 2.07 16 15 H 0.09 2.00 7.80 -2.39 -0.02 1.98 16 16 C -0.18 -3.39 8.68 71.98 0.62 -2.76 16 17 N -0.67 -20.63 5.23 -495.57 -2.59 -23.23 16 18 C 0.07 2.23 5.97 85.56 0.51 2.74 16 19 C 0.44 20.82 7.82 87.66 0.69 21.51 16 20 O -0.62 -34.56 15.78 -3.07 -0.05 -34.60 16 21 N -0.57 -29.52 5.29 -306.98 -1.62 -31.14 16 22 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 25 N -0.92 -49.90 13.05 21.67 0.28 -49.61 16 26 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 29 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 30 H 0.09 0.85 8.14 -2.38 -0.02 0.84 16 31 H 0.04 0.69 7.89 -2.39 -0.02 0.67 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.13 0.64 8.13 -2.39 -0.02 0.62 16 34 H 0.09 1.56 6.62 -2.39 -0.02 1.55 16 35 H 0.23 0.24 8.06 -2.91 -0.02 0.21 16 36 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.42 8.01 6.26 -92.71 -0.58 7.43 16 38 H 0.07 1.48 6.56 -2.39 -0.02 1.47 16 39 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.07 1.92 7.13 -2.39 -0.02 1.90 16 41 H 0.08 1.17 6.29 -2.39 -0.02 1.16 16 42 H 0.07 1.24 6.55 -2.39 -0.02 1.22 16 43 H 0.06 1.20 7.45 -2.39 -0.02 1.19 16 44 H 0.35 11.17 7.39 -89.69 -0.66 10.51 16 45 H 0.10 3.16 8.06 -2.39 -0.02 3.14 16 46 H 0.07 2.06 7.44 -2.39 -0.02 2.05 16 47 H 0.40 19.33 7.90 -92.71 -0.73 18.59 16 48 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -75.41 395.26 0.26 -75.15 By element: Atomic # 1 Polarization: 46.48 SS G_CDS: -0.96 Total: 45.52 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: 8.94 Total: 27.07 kcal Atomic # 7 Polarization: -131.89 SS G_CDS: -9.64 Total: -141.54 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.11 Total: -51.57 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -75.41 0.26 -75.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717407619.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.584 kcal (2) G-P(sol) polarization free energy of solvation -75.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds