Wall clock time and date at job start Tue Mar 31 2020 20:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46821 * 2 1 4 4 C 1.35401 * 126.44191 * 265.00198 * 3 2 1 5 5 C 1.35568 * 107.16075 * 180.02562 * 4 3 2 6 6 N 1.33105 * 108.34806 * 359.77088 * 5 4 3 7 7 C 1.31607 * 109.09362 * 0.37937 * 6 5 4 8 8 C 1.47416 * 125.86104 * 179.89403 * 7 6 5 9 9 O 1.21605 * 120.00018 * 179.68717 * 8 7 6 10 10 N 1.34779 * 119.99808 * 359.68353 * 8 7 6 11 11 C 1.46502 * 119.99830 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46938 * 325.00225 * 11 10 8 13 13 C 1.53000 * 109.46861 * 85.00099 * 11 10 8 14 14 C 1.52997 * 109.47004 * 205.00136 * 11 10 8 15 15 H 1.08993 * 109.47194 * 64.99579 * 14 11 10 16 16 C 1.53006 * 109.47127 * 304.99736 * 14 11 10 17 17 N 1.46902 * 109.47094 * 185.00358 * 14 11 10 18 18 C 1.46904 * 110.99949 * 205.00250 * 17 14 11 19 19 C 1.50702 * 109.47107 * 179.97438 * 18 17 14 20 20 O 1.21292 * 119.99798 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99799 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99562 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00283 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99450 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00132 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99511 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47319 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47263 * 119.99953 * 26 24 22 29 29 H 1.48507 * 109.46882 * 239.99776 * 26 24 22 30 30 H 1.09004 * 109.47235 * 299.99492 * 1 2 3 31 31 H 1.08997 * 109.47749 * 59.99856 * 1 2 3 32 32 H 1.09007 * 109.47291 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46599 * 240.00499 * 2 1 3 34 34 H 1.08994 * 109.47035 * 120.00010 * 2 1 3 35 35 H 1.07994 * 126.41917 * 0.02562 * 4 3 2 36 36 H 1.08000 * 125.82460 * 180.02562 * 5 4 3 37 37 H 0.97001 * 120.00108 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.46818 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.47412 * 299.99210 * 13 11 10 40 40 H 1.08994 * 109.47725 * 60.00045 * 13 11 10 41 41 H 1.09001 * 109.46998 * 59.99868 * 16 14 11 42 42 H 1.09000 * 109.47050 * 180.02562 * 16 14 11 43 43 H 1.09001 * 109.46801 * 300.00272 * 16 14 11 44 44 H 1.00896 * 111.00544 * 81.04158 * 17 14 11 45 45 H 1.09002 * 109.46523 * 299.99312 * 18 17 14 46 46 H 1.08997 * 109.46880 * 59.99279 * 18 17 14 47 47 H 0.96997 * 120.00155 * 0.02562 * 21 19 18 48 48 H 0.97002 * 119.99553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3758 2.1079 -1.0851 5 6 2.7660 3.3272 -0.6391 6 7 2.6451 3.3470 0.6863 7 6 2.1990 2.1783 1.0954 8 6 1.9337 1.7967 2.4943 9 8 1.5154 0.6844 2.7523 10 7 2.1547 2.6807 3.4874 11 6 1.8916 2.3014 4.8778 12 1 1.0260 1.6399 4.9163 13 6 3.1126 1.5774 5.4487 14 6 1.6106 3.5576 5.7047 15 1 0.6905 4.0250 5.3542 16 6 2.7729 4.5405 5.5501 17 7 1.4651 3.1900 7.1196 18 6 0.6451 4.1749 7.8377 19 6 0.5179 3.7649 9.2823 20 8 1.0570 2.7517 9.6749 21 7 -0.1948 4.5241 10.1379 22 6 -0.3109 4.1508 11.4520 23 1 0.1690 3.2487 11.8016 24 6 -1.0461 4.9333 12.3341 25 7 -1.6305 6.0307 11.9086 26 14 -1.2037 4.4251 14.1247 27 1 -0.4588 3.1599 14.3476 28 1 -0.6416 5.4906 14.9930 29 1 -2.6366 4.2205 14.4568 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.3541 1.7780 -2.1132 36 1 3.1118 4.1445 -1.2546 37 1 2.4880 3.5681 3.2816 38 1 2.9169 1.2956 6.4833 39 1 3.3127 0.6824 4.8596 40 1 3.9781 2.2388 5.4102 41 1 2.8810 4.8132 4.5003 42 1 2.5730 5.4352 6.1396 43 1 3.6931 4.0729 5.9006 44 1 2.3666 3.0806 7.5593 45 1 1.1189 5.1547 7.7781 46 1 -0.3454 4.2220 7.3851 47 1 -0.6261 5.3341 9.8239 48 1 -2.1434 6.5771 12.5245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717407621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:33 Heat of formation + Delta-G solvation = -9.658906 kcal Electronic energy + Delta-G solvation = -28804.462806 eV Core-core repulsion = 24702.571503 eV Total energy + Delta-G solvation = -4101.891303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.62457 -39.86748 -38.43439 -37.31513 -35.52691 -34.40135 -33.77298 -31.51130 -31.14253 -30.58583 -29.72705 -28.95172 -26.38392 -25.09570 -24.41787 -23.90586 -22.86744 -21.73515 -20.27285 -19.79242 -19.29836 -18.19296 -17.87529 -16.78511 -16.19879 -16.09899 -15.84028 -15.53979 -15.06281 -14.84099 -14.66522 -14.46718 -14.30250 -14.21076 -13.89586 -13.83923 -13.72384 -13.26678 -13.09278 -12.91253 -12.48402 -12.33217 -12.20440 -12.13637 -11.90061 -11.76215 -11.53819 -11.39461 -11.05526 -10.94430 -10.83898 -10.58018 -10.34863 -10.33192 -10.21232 -10.16439 -9.50771 -9.31739 -8.86894 -8.46174 -8.06363 -7.94671 -6.40671 -3.81304 1.07234 2.08621 2.29901 3.00330 3.17409 3.17751 3.27985 3.35429 3.92143 4.01996 4.13879 4.24075 4.34774 4.43017 4.57410 4.75225 4.81664 4.84121 4.91415 5.05186 5.12152 5.20752 5.23916 5.28069 5.31870 5.39010 5.42905 5.63521 5.68999 5.71080 5.80831 5.83627 5.88172 5.97871 6.01202 6.10901 6.23142 6.27552 6.35863 6.42047 6.54981 7.14578 7.21310 7.54469 7.56716 7.64252 7.94542 8.07820 8.62413 9.19232 9.55673 10.06958 10.77145 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.001832 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.974366 B =15282.778385 C =15550.069843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.412 5.412 4 C -0.031 4.031 5 C -0.029 4.029 6 N -0.447 5.447 7 C 0.141 3.859 8 C 0.607 3.393 9 O -0.537 6.537 10 N -0.699 5.699 11 C 0.155 3.845 12 H 0.099 0.901 13 C -0.163 4.163 14 C 0.078 3.922 15 H 0.084 0.916 16 C -0.191 4.191 17 N -0.658 5.658 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.409 0.591 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.353 0.647 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.668 -4.995 -28.204 29.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.093 5.093 4 C -0.170 4.170 5 C -0.182 4.182 6 N -0.169 5.169 7 C -0.119 4.119 8 C 0.390 3.610 9 O -0.413 6.413 10 N -0.352 5.352 11 C 0.051 3.949 12 H 0.117 0.883 13 C -0.222 4.222 14 C -0.033 4.033 15 H 0.102 0.898 16 C -0.250 4.250 17 N -0.291 5.291 18 C -0.082 4.082 19 C 0.227 3.773 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.199 0.801 36 H 0.195 0.805 37 H 0.246 0.754 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.174 0.826 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.183 -6.316 -27.118 28.756 hybrid contribution 0.180 1.008 -0.140 1.034 sum 7.363 -5.308 -27.258 28.730 Atomic orbital electron populations 1.22070 0.93377 1.03577 1.03081 1.22152 0.96484 0.78639 1.05397 1.45296 1.44933 1.12972 1.06100 1.22933 1.06782 0.94116 0.93128 1.22428 1.07238 0.97502 0.91013 1.70193 1.15416 1.18578 1.12722 1.22715 1.10285 0.88476 0.90387 1.16435 0.77902 0.84714 0.81910 1.90816 1.46400 1.20536 1.83537 1.45896 1.65968 1.17116 1.06217 1.20980 0.99711 0.96406 0.77833 0.88302 1.22185 0.97085 1.00217 1.02672 1.21709 0.98362 0.93161 0.90100 0.89808 1.22629 0.99776 1.00459 1.02104 1.60016 1.21680 1.47534 0.99851 1.21709 0.98698 0.93400 0.94350 1.19798 0.84531 0.86266 0.86749 1.90527 1.51019 1.26766 1.78346 1.41868 1.45523 1.23710 1.08988 1.19757 1.29966 1.09103 0.83933 0.87845 1.25269 0.96602 0.95611 1.00562 1.69622 1.33972 1.14337 1.36398 0.85799 0.77997 0.78690 0.81848 1.19210 1.20797 1.20766 0.91185 0.92312 0.90204 0.88995 0.87088 0.80101 0.80545 0.75353 0.89767 0.92570 0.92669 0.92156 0.91870 0.91599 0.82619 0.93667 0.89533 0.77467 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 10.23 37.16 0.38 -0.73 16 2 C 0.09 0.66 6.18 -4.04 -0.02 0.63 16 3 N -0.41 -3.68 2.76 -114.59 -0.32 -3.99 16 4 C -0.03 -0.22 11.53 -16.93 -0.20 -0.41 16 5 C -0.03 -0.24 11.85 -17.95 -0.21 -0.45 16 6 N -0.45 -4.94 10.89 -11.25 -0.12 -5.07 16 7 C 0.14 1.59 7.78 -154.52 -1.20 0.39 16 8 C 0.61 7.50 7.78 -12.52 -0.10 7.41 16 9 O -0.54 -7.60 14.17 5.27 0.07 -7.52 16 10 N -0.70 -7.73 4.99 -54.88 -0.27 -8.00 16 11 C 0.15 1.87 2.63 -67.93 -0.18 1.69 16 12 H 0.10 1.41 7.58 -51.93 -0.39 1.01 16 13 C -0.16 -1.95 8.86 37.16 0.33 -1.62 16 14 C 0.08 0.93 2.64 -67.71 -0.18 0.75 16 15 H 0.08 0.99 7.80 -51.93 -0.41 0.59 16 16 C -0.19 -1.92 8.68 37.16 0.32 -1.60 16 17 N -0.66 -10.16 5.23 -107.99 -0.56 -10.73 16 18 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 19 C 0.44 10.32 7.82 -10.99 -0.09 10.24 16 20 O -0.58 -15.70 15.78 5.55 0.09 -15.61 16 21 N -0.56 -14.27 5.29 -10.96 -0.06 -14.32 16 22 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 26 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 30 H 0.07 0.66 7.85 -51.93 -0.41 0.26 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.37 8.13 -51.93 -0.42 -0.05 16 34 H 0.11 0.95 6.64 -51.93 -0.34 0.60 16 35 H 0.18 0.57 8.06 -52.49 -0.42 0.14 16 36 H 0.18 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.41 4.07 6.26 -40.82 -0.26 3.82 16 38 H 0.08 1.11 7.13 -51.93 -0.37 0.74 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 41 H 0.06 0.52 6.29 -51.93 -0.33 0.19 16 42 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 43 H 0.07 0.65 6.55 -51.93 -0.34 0.31 16 44 H 0.35 5.62 7.39 -39.29 -0.29 5.33 16 45 H 0.05 0.70 7.44 -51.93 -0.39 0.31 16 46 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -33.53 395.18 -7.97 -41.50 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -7.03 Total: 16.41 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -1.41 Total: 9.15 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.61 Total: -65.99 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.16 Total: -23.14 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.53 -7.97 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717407621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.838 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds