Wall clock time and date at job start Tue Mar 31 2020 20:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46821 * 2 1 4 4 C 1.35401 * 126.44191 * 265.00198 * 3 2 1 5 5 C 1.35568 * 107.16075 * 180.02562 * 4 3 2 6 6 N 1.33105 * 108.34806 * 359.77088 * 5 4 3 7 7 C 1.31607 * 109.09362 * 0.37937 * 6 5 4 8 8 C 1.47416 * 125.86104 * 179.89403 * 7 6 5 9 9 O 1.21605 * 120.00018 * 179.68717 * 8 7 6 10 10 N 1.34779 * 119.99808 * 359.68353 * 8 7 6 11 11 C 1.46502 * 119.99830 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46938 * 325.00225 * 11 10 8 13 13 C 1.53000 * 109.46861 * 85.00099 * 11 10 8 14 14 C 1.52997 * 109.47004 * 205.00136 * 11 10 8 15 15 H 1.08993 * 109.47194 * 64.99579 * 14 11 10 16 16 C 1.53006 * 109.47127 * 304.99736 * 14 11 10 17 17 N 1.46902 * 109.47094 * 185.00358 * 14 11 10 18 18 C 1.46904 * 110.99949 * 205.00250 * 17 14 11 19 19 C 1.50702 * 109.47107 * 179.97438 * 18 17 14 20 20 O 1.21292 * 119.99798 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99799 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99562 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00283 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99450 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00132 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99511 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47319 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47263 * 119.99953 * 26 24 22 29 29 H 1.48507 * 109.46882 * 239.99776 * 26 24 22 30 30 H 1.09004 * 109.47235 * 299.99492 * 1 2 3 31 31 H 1.08997 * 109.47749 * 59.99856 * 1 2 3 32 32 H 1.09007 * 109.47291 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46599 * 240.00499 * 2 1 3 34 34 H 1.08994 * 109.47035 * 120.00010 * 2 1 3 35 35 H 1.07994 * 126.41917 * 0.02562 * 4 3 2 36 36 H 1.08000 * 125.82460 * 180.02562 * 5 4 3 37 37 H 0.97001 * 120.00108 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.46818 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.47412 * 299.99210 * 13 11 10 40 40 H 1.08994 * 109.47725 * 60.00045 * 13 11 10 41 41 H 1.09001 * 109.46998 * 59.99868 * 16 14 11 42 42 H 1.09000 * 109.47050 * 180.02562 * 16 14 11 43 43 H 1.09001 * 109.46801 * 300.00272 * 16 14 11 44 44 H 1.00896 * 111.00544 * 81.04158 * 17 14 11 45 45 H 1.09002 * 109.46523 * 299.99312 * 18 17 14 46 46 H 1.08997 * 109.46880 * 59.99279 * 18 17 14 47 47 H 0.96997 * 120.00155 * 0.02562 * 21 19 18 48 48 H 0.97002 * 119.99553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3758 2.1079 -1.0851 5 6 2.7660 3.3272 -0.6391 6 7 2.6451 3.3470 0.6863 7 6 2.1990 2.1783 1.0954 8 6 1.9337 1.7967 2.4943 9 8 1.5154 0.6844 2.7523 10 7 2.1547 2.6807 3.4874 11 6 1.8916 2.3014 4.8778 12 1 1.0260 1.6399 4.9163 13 6 3.1126 1.5774 5.4487 14 6 1.6106 3.5576 5.7047 15 1 0.6905 4.0250 5.3542 16 6 2.7729 4.5405 5.5501 17 7 1.4651 3.1900 7.1196 18 6 0.6451 4.1749 7.8377 19 6 0.5179 3.7649 9.2823 20 8 1.0570 2.7517 9.6749 21 7 -0.1948 4.5241 10.1379 22 6 -0.3109 4.1508 11.4520 23 1 0.1690 3.2487 11.8016 24 6 -1.0461 4.9333 12.3341 25 7 -1.6305 6.0307 11.9086 26 14 -1.2037 4.4251 14.1247 27 1 -0.4588 3.1599 14.3476 28 1 -0.6416 5.4906 14.9930 29 1 -2.6366 4.2205 14.4568 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.3541 1.7780 -2.1132 36 1 3.1118 4.1445 -1.2546 37 1 2.4880 3.5681 3.2816 38 1 2.9169 1.2956 6.4833 39 1 3.3127 0.6824 4.8596 40 1 3.9781 2.2388 5.4102 41 1 2.8810 4.8132 4.5003 42 1 2.5730 5.4352 6.1396 43 1 3.6931 4.0729 5.9006 44 1 2.3666 3.0806 7.5593 45 1 1.1189 5.1547 7.7781 46 1 -0.3454 4.2220 7.3851 47 1 -0.6261 5.3341 9.8239 48 1 -2.1434 6.5771 12.5245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717407621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:33 Heat of formation + Delta-G solvation = -34.571754 kcal Electronic energy + Delta-G solvation = -28805.543108 eV Core-core repulsion = 24702.571503 eV Total energy + Delta-G solvation = -4102.971605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.28306 -40.85076 -40.12613 -38.54701 -36.27093 -35.95611 -35.24868 -33.27725 -32.41009 -31.26937 -30.54168 -29.86019 -27.98253 -26.11813 -25.72425 -24.86142 -23.74924 -22.36139 -21.17318 -21.10363 -20.73817 -19.92533 -18.94559 -17.77547 -17.48604 -17.11195 -16.85567 -16.76247 -16.39015 -16.06903 -15.76189 -15.59641 -15.47142 -15.22710 -15.07065 -14.78352 -14.64302 -14.46433 -14.13158 -13.88584 -13.59774 -13.50590 -13.33877 -13.18076 -13.07141 -13.01614 -12.88082 -12.57767 -12.39683 -12.33388 -12.11295 -11.91216 -11.85921 -11.50555 -11.36752 -11.16665 -10.84406 -10.37539 -10.23478 -10.00505 -9.50975 -9.32200 -8.46237 -5.94622 0.32960 1.36886 1.40277 1.42302 1.56420 1.63528 2.06382 2.18325 2.31029 2.36933 2.96253 3.21229 3.30461 3.54511 3.73026 3.76347 3.85156 3.89413 4.03982 4.20718 4.30095 4.33449 4.40916 4.43495 4.47193 4.48521 4.53726 4.62410 4.69339 4.73516 4.79078 4.85088 4.95035 4.97683 5.13070 5.19734 5.26228 5.38815 5.41671 5.42692 5.67294 5.88328 5.92601 6.09165 6.32783 6.40251 6.60950 6.83230 7.07133 7.13580 7.57422 8.12726 8.71372 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.001832 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.974366 B =15282.778385 C =15550.069843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.413 5.413 4 C -0.009 4.009 5 C -0.047 4.047 6 N -0.464 5.464 7 C 0.102 3.898 8 C 0.602 3.398 9 O -0.564 6.564 10 N -0.690 5.690 11 C 0.163 3.837 12 H 0.073 0.927 13 C -0.155 4.155 14 C 0.085 3.915 15 H 0.089 0.911 16 C -0.185 4.185 17 N -0.672 5.672 18 C 0.066 3.934 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.226 0.774 36 H 0.203 0.797 37 H 0.415 0.585 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.350 0.650 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.054 -4.191 -30.548 31.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 N -0.094 5.094 4 C -0.148 4.148 5 C -0.200 4.200 6 N -0.186 5.186 7 C -0.156 4.156 8 C 0.388 3.612 9 O -0.443 6.443 10 N -0.343 5.343 11 C 0.058 3.942 12 H 0.091 0.909 13 C -0.214 4.214 14 C -0.026 4.026 15 H 0.107 0.893 16 C -0.243 4.243 17 N -0.305 5.305 18 C -0.066 4.066 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.148 0.852 34 H 0.107 0.893 35 H 0.242 0.758 36 H 0.220 0.780 37 H 0.255 0.745 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.170 0.830 45 H 0.090 0.910 46 H 0.120 0.880 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.565 -5.480 -29.477 30.922 hybrid contribution 0.082 0.734 0.432 0.856 sum 7.646 -4.746 -29.045 30.407 Atomic orbital electron populations 1.22020 0.93403 1.04185 1.01904 1.22280 0.96416 0.77960 1.06180 1.45513 1.44371 1.13469 1.06046 1.23683 1.03734 0.93167 0.94225 1.23027 1.07618 0.99092 0.90307 1.70128 1.15459 1.18633 1.14426 1.22426 1.13230 0.89582 0.90319 1.16698 0.77353 0.84389 0.82797 1.90793 1.47723 1.21640 1.84136 1.45745 1.65786 1.17278 1.05534 1.20750 0.98730 0.96125 0.78612 0.90903 1.22091 0.97637 1.00169 1.01465 1.21676 0.99658 0.93447 0.87798 0.89266 1.22561 0.98716 0.99707 1.03347 1.59958 1.21482 1.47699 1.01365 1.21555 1.00285 0.94692 0.90054 1.20878 0.82557 0.85091 0.88894 1.90497 1.52189 1.28427 1.79742 1.41932 1.46300 1.24235 1.08639 1.19700 1.31535 1.09196 0.85733 0.90334 1.26042 0.95698 0.95398 1.04269 1.69679 1.33915 1.14727 1.37817 0.84871 0.78229 0.78227 0.77003 1.19834 1.19532 1.19718 0.94589 0.91063 0.88774 0.85205 0.89271 0.75791 0.78026 0.74550 0.91200 0.93511 0.91082 0.90375 0.91680 0.91373 0.83001 0.91010 0.87952 0.76955 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.23 71.98 0.74 -1.27 16 2 C 0.09 1.16 6.18 86.38 0.53 1.70 16 3 N -0.41 -6.73 2.76 -516.45 -1.42 -8.16 16 4 C -0.01 -0.10 11.53 83.52 0.96 0.87 16 5 C -0.05 -0.67 11.85 83.88 0.99 0.33 16 6 N -0.46 -9.74 10.89 -189.52 -2.06 -11.80 16 7 C 0.10 2.27 7.78 136.28 1.06 3.33 16 8 C 0.60 15.36 7.78 86.66 0.67 16.03 16 9 O -0.56 -16.91 14.17 -4.05 -0.06 -16.96 16 10 N -0.69 -15.37 4.99 -445.81 -2.22 -17.59 16 11 C 0.16 3.99 2.63 44.99 0.12 4.11 16 12 H 0.07 2.19 7.58 -2.39 -0.02 2.17 16 13 C -0.16 -3.79 8.86 71.98 0.64 -3.15 16 14 C 0.08 1.96 2.64 44.92 0.12 2.08 16 15 H 0.09 2.00 7.80 -2.39 -0.02 1.98 16 16 C -0.18 -3.39 8.68 71.98 0.62 -2.76 16 17 N -0.67 -20.65 5.23 -495.56 -2.59 -23.24 16 18 C 0.07 2.23 5.97 85.56 0.51 2.74 16 19 C 0.44 20.83 7.82 87.66 0.69 21.51 16 20 O -0.62 -34.55 15.78 -3.07 -0.05 -34.60 16 21 N -0.57 -29.52 5.29 -306.98 -1.62 -31.15 16 22 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 23 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 24 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 25 N -0.92 -49.90 13.05 21.66 0.28 -49.62 16 26 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 30 H 0.03 0.71 7.85 -2.38 -0.02 0.69 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.13 0.63 8.13 -2.39 -0.02 0.61 16 34 H 0.09 1.55 6.64 -2.39 -0.02 1.53 16 35 H 0.23 0.24 8.06 -2.91 -0.02 0.21 16 36 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.42 8.01 6.26 -92.71 -0.58 7.43 16 38 H 0.07 1.91 7.13 -2.39 -0.02 1.89 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.48 6.56 -2.39 -0.02 1.46 16 41 H 0.08 1.17 6.29 -2.39 -0.02 1.16 16 42 H 0.06 1.20 7.45 -2.39 -0.02 1.19 16 43 H 0.07 1.24 6.55 -2.39 -0.02 1.22 16 44 H 0.35 11.17 7.39 -89.70 -0.66 10.51 16 45 H 0.07 2.07 7.44 -2.39 -0.02 2.05 16 46 H 0.10 3.16 8.05 -2.39 -0.02 3.14 16 47 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 48 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -75.42 395.18 0.26 -75.16 By element: Atomic # 1 Polarization: 46.54 SS G_CDS: -0.96 Total: 45.58 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 8.94 Total: 27.01 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -9.64 Total: -141.56 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.11 Total: -51.56 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -75.42 0.26 -75.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717407621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.587 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds