Wall clock time and date at job start Tue Mar 31 2020 20:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47306 * 2 1 4 4 C 1.35398 * 126.44464 * 265.14507 * 3 2 1 5 5 C 1.35564 * 107.16462 * 180.24033 * 4 3 2 6 6 N 1.33098 * 108.34819 * 359.77233 * 5 4 3 7 7 C 1.31615 * 109.09801 * 0.02562 * 6 5 4 8 8 C 1.47406 * 125.86905 * 179.97438 * 7 6 5 9 9 O 1.21603 * 120.00207 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99521 * 0.02562 * 8 7 6 11 11 C 1.46507 * 119.99542 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46822 * 35.00535 * 11 10 8 13 13 C 1.52997 * 109.47235 * 275.00190 * 11 10 8 14 14 C 1.53002 * 109.46688 * 155.00029 * 11 10 8 15 15 H 1.09002 * 109.47070 * 60.00104 * 14 11 10 16 16 C 1.53000 * 109.47233 * 299.99730 * 14 11 10 17 17 N 1.46901 * 109.46860 * 180.02562 * 14 11 10 18 18 C 1.46903 * 110.99880 * 205.00557 * 17 14 11 19 19 C 1.50697 * 109.46959 * 180.02562 * 18 17 14 20 20 O 1.21293 * 120.00499 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99745 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00042 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99673 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00330 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00180 * 180.02562 * 24 22 21 26 26 Si 1.86809 * 119.99636 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46817 * 90.00107 * 26 24 22 28 28 H 1.48499 * 109.46642 * 209.99656 * 26 24 22 29 29 H 1.48492 * 109.46983 * 329.99850 * 26 24 22 30 30 H 1.08997 * 109.46667 * 300.00200 * 1 2 3 31 31 H 1.09005 * 109.46856 * 59.99470 * 1 2 3 32 32 H 1.08993 * 109.46932 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46869 * 240.00533 * 2 1 3 34 34 H 1.09001 * 109.47314 * 120.00698 * 2 1 3 35 35 H 1.08002 * 126.41868 * 359.97438 * 4 3 2 36 36 H 1.08001 * 125.82514 * 179.74690 * 5 4 3 37 37 H 0.96997 * 120.00436 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47171 * 59.99556 * 13 11 10 39 39 H 1.09000 * 109.47140 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.47045 * 300.00215 * 13 11 10 41 41 H 1.08992 * 109.47399 * 300.00166 * 16 14 11 42 42 H 1.09004 * 109.46724 * 60.00652 * 16 14 11 43 43 H 1.09001 * 109.47194 * 179.97438 * 16 14 11 44 44 H 1.00892 * 111.00435 * 81.04393 * 17 14 11 45 45 H 1.09003 * 109.46525 * 299.99167 * 18 17 14 46 46 H 1.08991 * 109.47692 * 59.99249 * 18 17 14 47 47 H 0.97000 * 119.99778 * 359.97438 * 21 19 18 48 48 H 0.97000 * 119.99660 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3734 2.1087 -1.0853 5 6 2.7694 3.3260 -0.6388 6 7 2.6543 3.3437 0.6871 7 6 2.1992 2.1782 1.0954 8 6 1.9348 1.7963 2.4944 9 8 1.5134 0.6851 2.7521 10 7 2.1601 2.6788 3.4879 11 6 1.8978 2.2990 4.8783 12 1 2.1364 1.2446 5.0181 13 6 0.4212 2.5351 5.2017 14 6 2.7660 3.1463 5.8108 15 1 2.5275 4.2007 5.6709 16 6 4.2426 2.9101 5.4874 17 7 2.5035 2.7651 7.2049 18 6 2.8155 3.8707 8.1206 19 6 2.5350 3.4431 9.5382 20 8 2.1159 2.3274 9.7636 21 7 2.7498 4.3006 10.5557 22 6 2.4941 3.9118 11.8453 23 1 2.1202 2.9187 12.0459 24 6 2.7161 4.7956 12.8943 25 7 2.4715 4.4228 14.1305 26 14 3.3623 6.5137 12.5473 27 1 2.2199 7.4390 12.3373 28 1 4.1717 6.9805 13.7015 29 1 4.2086 6.4871 11.3275 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.3501 1.7795 -2.1136 36 1 3.1190 4.1419 -1.2540 37 1 2.4959 3.5653 3.2823 38 1 -0.1972 1.9316 4.5373 39 1 0.2262 2.2530 6.2363 40 1 0.1827 3.5895 5.0618 41 1 4.4811 1.8559 5.6273 42 1 4.4377 3.1927 4.4529 43 1 4.8611 3.5141 6.1514 44 1 3.0160 1.9329 7.4549 45 1 3.8680 4.1368 8.0234 46 1 2.1980 4.7337 7.8721 47 1 3.0853 5.1927 10.3755 48 1 2.6269 5.0396 14.8628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717407622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:36 Heat of formation + Delta-G solvation = -5.669825 kcal Electronic energy + Delta-G solvation = -28851.008309 eV Core-core repulsion = 24749.289985 eV Total energy + Delta-G solvation = -4101.718324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.65502 -39.85947 -38.57949 -37.29243 -35.56805 -34.49027 -33.84675 -31.70013 -31.39497 -30.60793 -29.87321 -29.35151 -26.48791 -24.83490 -24.14251 -23.77154 -22.60543 -21.74571 -20.75794 -20.16496 -19.38012 -18.42818 -18.08547 -16.76160 -16.49355 -16.05851 -15.88387 -15.38587 -15.08182 -14.90651 -14.81907 -14.45805 -14.27013 -14.05200 -13.95219 -13.84142 -13.65571 -13.30899 -13.08861 -13.03355 -12.58745 -12.50985 -12.34514 -12.17456 -12.02318 -11.82070 -11.63839 -11.60243 -11.32097 -11.14801 -10.74901 -10.60835 -10.59022 -10.38938 -10.19819 -9.96829 -9.56511 -9.37716 -8.90409 -8.58831 -8.18872 -8.13442 -6.30238 -3.81660 1.03932 2.05090 2.26746 2.95236 3.02886 3.07576 3.14437 3.15726 3.74787 3.96867 4.10577 4.17831 4.21635 4.38664 4.54035 4.59334 4.79637 4.81226 4.88189 4.98175 5.02286 5.11269 5.20676 5.23234 5.28621 5.40650 5.45935 5.58269 5.64247 5.64689 5.72192 5.80197 5.83328 5.90335 5.94651 6.00373 6.05202 6.20165 6.31706 6.50739 6.52137 7.05054 7.14389 7.50087 7.54864 7.59020 7.90482 8.15432 8.60496 8.95936 9.43288 9.83454 10.82866 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.001909 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.799151 B =14662.309128 C =15268.330384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.413 5.413 4 C -0.031 4.031 5 C -0.028 4.028 6 N -0.447 5.447 7 C 0.141 3.859 8 C 0.608 3.392 9 O -0.537 6.537 10 N -0.697 5.697 11 C 0.155 3.845 12 H 0.092 0.908 13 C -0.153 4.153 14 C 0.077 3.923 15 H 0.084 0.916 16 C -0.186 4.186 17 N -0.657 5.657 18 C 0.050 3.950 19 C 0.450 3.550 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.409 0.591 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.354 0.646 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -1.895 -33.231 33.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.093 5.093 4 C -0.169 4.169 5 C -0.182 4.182 6 N -0.169 5.169 7 C -0.119 4.119 8 C 0.392 3.608 9 O -0.413 6.413 10 N -0.349 5.349 11 C 0.051 3.949 12 H 0.110 0.890 13 C -0.211 4.211 14 C -0.034 4.034 15 H 0.102 0.898 16 C -0.245 4.245 17 N -0.290 5.290 18 C -0.083 4.083 19 C 0.236 3.764 20 O -0.445 6.445 21 N -0.230 5.230 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.199 0.801 36 H 0.195 0.805 37 H 0.245 0.755 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.175 0.825 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.240 -2.812 -32.044 32.168 hybrid contribution 1.560 1.319 -0.969 2.261 sum 1.800 -1.492 -33.013 33.096 Atomic orbital electron populations 1.22068 0.93397 1.03568 1.03053 1.22153 0.96472 0.78642 1.05415 1.45297 1.45002 1.12911 1.06107 1.22935 1.06803 0.94072 0.93125 1.22426 1.07185 0.97580 0.90989 1.70193 1.15311 1.18638 1.12719 1.22708 1.10221 0.88573 0.90374 1.16398 0.77989 0.84541 0.81914 1.90816 1.46318 1.20741 1.83465 1.45733 1.65868 1.17083 1.06182 1.20968 0.95923 1.00292 0.77743 0.88984 1.22051 0.94176 1.01272 1.03620 1.21747 0.92834 0.99479 0.89329 0.89825 1.22549 0.97242 1.02459 1.02210 1.59977 1.63148 1.06541 0.99293 1.21729 0.99426 0.94761 0.92407 1.19698 0.84556 0.86593 0.85596 1.90574 1.48768 1.20783 1.84404 1.42207 1.59951 1.13843 1.07038 1.19431 1.41531 1.02672 0.79683 0.86273 1.25045 0.97782 0.98390 0.94999 1.69623 1.47778 1.36259 0.98474 0.86668 0.79506 0.84733 0.78444 1.19593 1.20225 1.19542 0.91211 0.92317 0.90206 0.88980 0.87092 0.80102 0.80549 0.75504 0.93058 0.89240 0.92992 0.92124 0.91962 0.92188 0.82533 0.93607 0.89370 0.79708 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 10.23 37.16 0.38 -0.66 16 2 C 0.09 0.63 6.18 -4.04 -0.02 0.60 16 3 N -0.41 -3.53 2.76 -114.59 -0.32 -3.84 16 4 C -0.03 -0.20 11.53 -16.93 -0.20 -0.40 16 5 C -0.03 -0.23 11.85 -17.96 -0.21 -0.44 16 6 N -0.45 -4.74 10.89 -11.26 -0.12 -4.87 16 7 C 0.14 1.53 7.79 -154.51 -1.20 0.32 16 8 C 0.61 7.16 7.78 -12.53 -0.10 7.07 16 9 O -0.54 -7.32 14.16 5.27 0.07 -7.24 16 10 N -0.70 -7.25 4.38 -54.88 -0.24 -7.49 16 11 C 0.15 1.76 2.34 -67.93 -0.16 1.60 16 12 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 13 C -0.15 -1.87 9.33 37.16 0.35 -1.52 16 14 C 0.08 0.85 2.22 -67.71 -0.15 0.70 16 15 H 0.08 0.85 7.80 -51.93 -0.41 0.45 16 16 C -0.19 -1.86 9.00 37.16 0.33 -1.52 16 17 N -0.66 -9.51 5.11 -107.99 -0.55 -10.07 16 18 C 0.05 0.78 5.97 -4.98 -0.03 0.75 16 19 C 0.45 10.00 7.82 -10.98 -0.09 9.92 16 20 O -0.56 -14.92 15.78 5.55 0.09 -14.83 16 21 N -0.59 -13.92 5.09 -10.96 -0.06 -13.98 16 22 C -0.30 -8.59 10.16 -14.93 -0.15 -8.74 16 23 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.76 13.96 55.50 0.77 -24.98 16 26 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 29 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 30 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.35 8.13 -51.93 -0.42 -0.07 16 34 H 0.11 0.91 6.64 -51.93 -0.34 0.57 16 35 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.41 3.78 8.07 -40.82 -0.33 3.45 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.26 7.60 -51.93 -0.39 0.86 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 42 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16 43 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 44 H 0.35 5.46 8.17 -39.30 -0.32 5.14 16 45 H 0.05 0.63 7.44 -51.93 -0.39 0.25 16 46 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 47 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -34.55 398.78 -7.75 -42.30 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -7.35 Total: 15.69 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.34 Total: 8.70 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.51 Total: -65.22 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: 0.16 Total: -22.07 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.55 -7.75 -42.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717407622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.629 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds