Wall clock time and date at job start Tue Mar 31 2020 20:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47306 * 2 1 4 4 C 1.35398 * 126.44464 * 265.14507 * 3 2 1 5 5 C 1.35564 * 107.16462 * 180.24033 * 4 3 2 6 6 N 1.33098 * 108.34819 * 359.77233 * 5 4 3 7 7 C 1.31615 * 109.09801 * 0.02562 * 6 5 4 8 8 C 1.47406 * 125.86905 * 179.97438 * 7 6 5 9 9 O 1.21603 * 120.00207 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99521 * 0.02562 * 8 7 6 11 11 C 1.46507 * 119.99542 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46822 * 35.00535 * 11 10 8 13 13 C 1.52997 * 109.47235 * 275.00190 * 11 10 8 14 14 C 1.53002 * 109.46688 * 155.00029 * 11 10 8 15 15 H 1.09002 * 109.47070 * 60.00104 * 14 11 10 16 16 C 1.53000 * 109.47233 * 299.99730 * 14 11 10 17 17 N 1.46901 * 109.46860 * 180.02562 * 14 11 10 18 18 C 1.46903 * 110.99880 * 205.00557 * 17 14 11 19 19 C 1.50697 * 109.46959 * 180.02562 * 18 17 14 20 20 O 1.21293 * 120.00499 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99745 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00042 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99673 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00330 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00180 * 180.02562 * 24 22 21 26 26 Si 1.86809 * 119.99636 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46817 * 90.00107 * 26 24 22 28 28 H 1.48499 * 109.46642 * 209.99656 * 26 24 22 29 29 H 1.48492 * 109.46983 * 329.99850 * 26 24 22 30 30 H 1.08997 * 109.46667 * 300.00200 * 1 2 3 31 31 H 1.09005 * 109.46856 * 59.99470 * 1 2 3 32 32 H 1.08993 * 109.46932 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46869 * 240.00533 * 2 1 3 34 34 H 1.09001 * 109.47314 * 120.00698 * 2 1 3 35 35 H 1.08002 * 126.41868 * 359.97438 * 4 3 2 36 36 H 1.08001 * 125.82514 * 179.74690 * 5 4 3 37 37 H 0.96997 * 120.00436 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47171 * 59.99556 * 13 11 10 39 39 H 1.09000 * 109.47140 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.47045 * 300.00215 * 13 11 10 41 41 H 1.08992 * 109.47399 * 300.00166 * 16 14 11 42 42 H 1.09004 * 109.46724 * 60.00652 * 16 14 11 43 43 H 1.09001 * 109.47194 * 179.97438 * 16 14 11 44 44 H 1.00892 * 111.00435 * 81.04393 * 17 14 11 45 45 H 1.09003 * 109.46525 * 299.99167 * 18 17 14 46 46 H 1.08991 * 109.47692 * 59.99249 * 18 17 14 47 47 H 0.97000 * 119.99778 * 359.97438 * 21 19 18 48 48 H 0.97000 * 119.99660 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3734 2.1087 -1.0853 5 6 2.7694 3.3260 -0.6388 6 7 2.6543 3.3437 0.6871 7 6 2.1992 2.1782 1.0954 8 6 1.9348 1.7963 2.4944 9 8 1.5134 0.6851 2.7521 10 7 2.1601 2.6788 3.4879 11 6 1.8978 2.2990 4.8783 12 1 2.1364 1.2446 5.0181 13 6 0.4212 2.5351 5.2017 14 6 2.7660 3.1463 5.8108 15 1 2.5275 4.2007 5.6709 16 6 4.2426 2.9101 5.4874 17 7 2.5035 2.7651 7.2049 18 6 2.8155 3.8707 8.1206 19 6 2.5350 3.4431 9.5382 20 8 2.1159 2.3274 9.7636 21 7 2.7498 4.3006 10.5557 22 6 2.4941 3.9118 11.8453 23 1 2.1202 2.9187 12.0459 24 6 2.7161 4.7956 12.8943 25 7 2.4715 4.4228 14.1305 26 14 3.3623 6.5137 12.5473 27 1 2.2199 7.4390 12.3373 28 1 4.1717 6.9805 13.7015 29 1 4.2086 6.4871 11.3275 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.3501 1.7795 -2.1136 36 1 3.1190 4.1419 -1.2540 37 1 2.4959 3.5653 3.2823 38 1 -0.1972 1.9316 4.5373 39 1 0.2262 2.2530 6.2363 40 1 0.1827 3.5895 5.0618 41 1 4.4811 1.8559 5.6273 42 1 4.4377 3.1927 4.4529 43 1 4.8611 3.5141 6.1514 44 1 3.0160 1.9329 7.4549 45 1 3.8680 4.1368 8.0234 46 1 2.1980 4.7337 7.8721 47 1 3.0853 5.1927 10.3755 48 1 2.6269 5.0396 14.8628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717407622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:35 Heat of formation + Delta-G solvation = -32.604231 kcal Electronic energy + Delta-G solvation = -28852.176272 eV Core-core repulsion = 24749.289985 eV Total energy + Delta-G solvation = -4102.886287 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.27641 -40.79782 -40.24044 -38.42874 -36.28271 -35.97405 -35.28830 -33.73252 -32.35662 -31.25923 -30.78294 -30.11427 -28.05068 -25.67758 -25.54073 -24.61670 -23.48708 -22.35518 -21.72233 -21.23404 -20.95526 -20.26139 -18.86572 -17.73642 -17.53978 -17.27380 -16.88009 -16.65931 -16.47692 -15.84748 -15.65800 -15.51017 -15.23614 -15.15273 -14.97673 -14.71349 -14.62290 -14.49554 -14.34571 -14.24746 -13.88209 -13.61055 -13.43630 -13.20369 -13.02926 -12.99860 -12.72957 -12.58032 -12.39495 -12.36606 -12.20953 -11.96808 -11.69229 -11.49516 -11.36401 -11.16737 -10.83882 -10.44252 -10.26231 -10.22918 -9.50941 -9.29418 -8.39662 -6.00501 0.33755 1.31459 1.37479 1.40634 1.46053 1.64083 1.98481 2.18097 2.24694 2.37915 2.79810 3.16813 3.28457 3.48873 3.65021 3.74260 3.87063 4.00893 4.03998 4.17310 4.22158 4.33251 4.41213 4.45124 4.46731 4.49148 4.55371 4.60747 4.71480 4.78818 4.79568 4.85230 4.95945 5.01529 5.13380 5.22365 5.26136 5.34451 5.46734 5.54885 5.67817 5.92028 5.92911 6.04996 6.32651 6.36435 6.61525 6.84093 6.90246 7.08355 7.41997 7.99133 8.78020 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.001909 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.799151 B =14662.309128 C =15268.330384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.414 5.414 4 C -0.010 4.010 5 C -0.047 4.047 6 N -0.462 5.462 7 C 0.103 3.897 8 C 0.604 3.396 9 O -0.566 6.566 10 N -0.687 5.687 11 C 0.163 3.837 12 H 0.071 0.929 13 C -0.145 4.145 14 C 0.086 3.914 15 H 0.105 0.895 16 C -0.179 4.179 17 N -0.674 5.674 18 C 0.065 3.935 19 C 0.449 3.551 20 O -0.614 6.614 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.054 0.946 24 C -0.017 4.017 25 N -0.936 5.936 26 Si 0.966 3.034 27 H -0.257 1.257 28 H -0.277 1.277 29 H -0.229 1.229 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.224 0.776 36 H 0.202 0.798 37 H 0.417 0.583 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.346 0.654 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.390 0.610 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 0.992 -37.294 37.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 N -0.095 5.095 4 C -0.149 4.149 5 C -0.200 4.200 6 N -0.185 5.185 7 C -0.154 4.154 8 C 0.389 3.611 9 O -0.444 6.444 10 N -0.339 5.339 11 C 0.058 3.942 12 H 0.089 0.911 13 C -0.204 4.204 14 C -0.024 4.024 15 H 0.123 0.877 16 C -0.238 4.238 17 N -0.306 5.306 18 C -0.068 4.068 19 C 0.237 3.763 20 O -0.498 6.498 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.072 0.928 24 C -0.216 4.216 25 N -0.576 5.576 26 Si 0.786 3.214 27 H -0.182 1.182 28 H -0.202 1.202 29 H -0.152 1.152 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.147 0.853 34 H 0.107 0.893 35 H 0.241 0.759 36 H 0.219 0.781 37 H 0.254 0.746 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.165 0.835 45 H 0.098 0.902 46 H 0.136 0.864 47 H 0.226 0.774 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.831 0.090 -36.134 36.180 hybrid contribution 0.998 0.267 0.187 1.050 sum 2.829 0.358 -35.947 36.060 Atomic orbital electron populations 1.22016 0.93379 1.04161 1.01920 1.22274 0.96443 0.77996 1.06129 1.45511 1.44478 1.13395 1.06092 1.23670 1.03871 0.93166 0.94209 1.23015 1.07569 0.99117 0.90330 1.70131 1.15353 1.18662 1.14346 1.22442 1.13030 0.89637 0.90325 1.16650 0.77444 0.84223 0.82773 1.90796 1.47666 1.21894 1.84055 1.45561 1.65624 1.17263 1.05440 1.20752 0.95452 0.99365 0.78621 0.91114 1.21947 0.94751 1.01719 1.01950 1.21725 0.93478 1.00244 0.86982 0.87724 1.22476 0.96177 1.02043 1.03098 1.59931 1.63738 1.06090 1.00817 1.21657 1.01985 0.95529 0.87580 1.21016 0.81911 0.85469 0.87936 1.90557 1.50342 1.23193 1.85758 1.42025 1.60704 1.15052 1.05540 1.18999 1.43242 1.00807 0.82642 0.92783 1.26145 0.97291 1.04141 0.94008 1.69812 1.49061 1.38707 1.00047 0.85351 0.79508 0.76691 0.79869 1.18174 1.20176 1.15241 0.94512 0.91081 0.88824 0.85315 0.89286 0.75909 0.78071 0.74574 0.94159 0.91291 0.91739 0.93121 0.90780 0.91416 0.83463 0.90237 0.86387 0.77433 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.23 71.98 0.74 -1.14 16 2 C 0.09 1.10 6.18 86.38 0.53 1.63 16 3 N -0.41 -6.39 2.76 -516.44 -1.42 -7.81 16 4 C -0.01 -0.10 11.53 83.52 0.96 0.86 16 5 C -0.05 -0.62 11.85 83.88 0.99 0.37 16 6 N -0.46 -9.14 10.89 -189.52 -2.06 -11.20 16 7 C 0.10 2.17 7.79 136.27 1.06 3.23 16 8 C 0.60 14.48 7.78 86.66 0.67 15.15 16 9 O -0.57 -16.22 14.16 -4.04 -0.06 -16.27 16 10 N -0.69 -14.00 4.38 -445.81 -1.95 -15.95 16 11 C 0.16 3.69 2.34 44.99 0.11 3.80 16 12 H 0.07 1.93 7.58 -2.39 -0.02 1.91 16 13 C -0.15 -3.60 9.33 71.98 0.67 -2.93 16 14 C 0.09 1.74 2.22 44.92 0.10 1.84 16 15 H 0.10 1.74 7.80 -2.39 -0.02 1.72 16 16 C -0.18 -3.19 9.00 71.98 0.65 -2.54 16 17 N -0.67 -18.81 5.11 -495.57 -2.53 -21.35 16 18 C 0.06 1.86 5.97 85.56 0.51 2.37 16 19 C 0.45 19.90 7.82 87.66 0.69 20.59 16 20 O -0.61 -33.92 15.78 -3.07 -0.05 -33.97 16 21 N -0.59 -27.58 5.09 -306.98 -1.56 -29.14 16 22 C -0.33 -19.22 10.16 84.04 0.85 -18.37 16 23 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 24 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 25 N -0.94 -56.72 13.96 21.66 0.30 -56.42 16 26 Si 0.97 38.64 27.74 68.60 1.90 40.54 16 27 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 28 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 30 H 0.04 0.68 7.84 -2.39 -0.02 0.66 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.13 0.56 8.13 -2.39 -0.02 0.54 16 34 H 0.09 1.49 6.64 -2.39 -0.02 1.47 16 35 H 0.22 0.12 8.06 -2.91 -0.02 0.10 16 36 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.42 7.15 8.07 -92.71 -0.75 6.40 16 38 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 2.00 7.60 -2.39 -0.02 1.98 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 42 H 0.07 1.16 7.45 -2.39 -0.02 1.14 16 43 H 0.07 1.13 7.45 -2.39 -0.02 1.11 16 44 H 0.35 10.71 8.17 -89.70 -0.73 9.98 16 45 H 0.08 1.83 7.44 -2.39 -0.02 1.82 16 46 H 0.12 2.79 8.05 -2.39 -0.02 2.77 16 47 H 0.39 14.91 5.76 -92.71 -0.53 14.38 16 48 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -83.41 398.78 0.50 -82.92 By element: Atomic # 1 Polarization: 45.37 SS G_CDS: -1.07 Total: 44.30 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 9.00 Total: 24.36 kcal Atomic # 7 Polarization: -132.64 SS G_CDS: -9.23 Total: -141.87 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.11 Total: -50.24 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.90 Total: 40.54 kcal Total: -83.41 0.50 -82.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717407622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.312 kcal (2) G-P(sol) polarization free energy of solvation -83.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds