Wall clock time and date at job start Tue Mar 31 2020 19:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 5 5 C 1.46906 * 110.99961 * 275.00030 * 4 2 1 6 6 C 1.50699 * 109.46941 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00122 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99486 * 180.02562 * 6 5 4 9 9 C 1.37100 * 119.99314 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00247 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99599 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00095 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99990 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46868 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46930 * 119.99745 * 13 11 9 16 16 H 1.48500 * 109.46906 * 239.99741 * 13 11 9 17 17 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 18 18 H 1.09001 * 109.46992 * 174.99449 * 17 2 1 19 19 C 1.52996 * 109.47276 * 294.99872 * 17 2 1 20 20 N 1.46510 * 109.47089 * 54.99980 * 17 2 1 21 21 C 1.34774 * 119.99669 * 154.99962 * 20 17 2 22 22 O 1.21277 * 120.00249 * 359.97438 * 21 20 17 23 23 C 1.50703 * 119.99604 * 180.02562 * 21 20 17 24 24 C 1.52998 * 109.46905 * 179.97438 * 23 21 20 25 25 C 1.50699 * 109.47033 * 179.97438 * 24 23 21 26 26 C 1.39867 * 126.04266 * 269.69471 * 25 24 23 27 27 N 1.30840 * 108.20752 * 179.81856 * 26 25 24 28 28 N 1.40093 * 108.19882 * 0.43759 * 27 26 25 29 29 H 0.96999 * 126.03300 * 179.70507 * 28 27 26 30 30 C 1.34947 * 107.92620 * 359.71695 * 28 27 26 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 33 33 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 34 34 H 1.00895 * 110.99835 * 151.05029 * 4 2 1 35 35 H 1.08996 * 109.46904 * 300.00505 * 5 4 2 36 36 H 1.08996 * 109.46971 * 60.00210 * 5 4 2 37 37 H 0.96999 * 120.00031 * 359.97438 * 8 6 5 38 38 H 0.96997 * 119.99888 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.47375 * 300.00219 * 19 17 2 40 40 H 1.09000 * 109.46912 * 60.00396 * 19 17 2 41 41 H 1.09004 * 109.47120 * 180.02562 * 19 17 2 42 42 H 0.96996 * 119.99772 * 335.00277 * 20 17 2 43 43 H 1.08999 * 109.47188 * 299.99543 * 23 21 20 44 44 H 1.08996 * 109.47321 * 59.99804 * 23 21 20 45 45 H 1.08997 * 109.47501 * 299.99660 * 24 23 21 46 46 H 1.09007 * 109.47408 * 60.00244 * 24 23 21 47 47 H 1.08006 * 125.89933 * 359.97438 * 26 25 24 48 48 H 1.07999 * 126.12578 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6986 3.4698 8 7 2.7286 0.1204 4.7324 9 6 3.1895 -0.5566 5.8319 10 1 3.4398 -1.6043 5.7553 11 6 3.3334 0.1052 7.0452 12 7 3.0283 1.3800 7.1386 13 14 3.9607 -0.8172 8.5436 14 1 4.2302 -2.2309 8.1775 15 1 5.2134 -0.1829 9.0267 16 1 2.9363 -0.7711 9.6178 17 6 2.0401 -0.7212 -1.2492 18 1 3.1264 -0.6441 -1.2952 19 6 1.6354 -2.1954 -1.1881 20 7 1.4559 -0.1035 -2.4424 21 6 2.0913 -0.1936 -3.6275 22 8 3.1469 -0.7855 -3.7062 23 6 1.4907 0.4423 -4.8548 24 6 2.4049 0.1954 -6.0564 25 6 1.8040 0.8307 -7.2837 26 6 0.9257 0.2163 -8.1822 27 7 0.6209 1.0832 -9.1136 28 7 1.3048 2.2754 -8.8422 29 1 1.2682 3.0874 -9.3716 30 6 2.0234 2.0946 -7.7144 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 2.9173 -1.1205 1.0287 35 1 2.7588 1.0461 2.1183 36 1 1.0871 0.6161 2.5526 37 1 2.5041 1.0615 4.8011 38 1 3.1291 1.8421 7.9855 39 1 2.0699 -2.6549 -0.3004 40 1 0.5490 -2.2723 -1.1422 41 1 1.9991 -2.7092 -2.0779 42 1 0.6119 0.3703 -2.3794 43 1 0.5108 0.0057 -5.0476 44 1 1.3851 1.5151 -4.6934 45 1 3.3847 0.6323 -5.8635 46 1 2.5109 -0.8775 -6.2180 47 1 0.5599 -0.7979 -8.1170 48 1 2.6595 2.8274 -7.2403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717429651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:36 Heat of formation + Delta-G solvation = -7.108697 kcal Electronic energy + Delta-G solvation = -27860.552388 eV Core-core repulsion = 23758.771670 eV Total energy + Delta-G solvation = -4101.780718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60547 -40.12816 -38.47576 -37.36608 -34.50071 -34.26832 -33.77655 -31.76601 -31.34596 -31.00021 -29.52436 -28.92779 -26.57471 -25.15263 -24.38469 -23.22613 -22.39503 -20.71456 -20.26676 -19.75531 -19.30489 -18.24936 -17.93230 -17.33275 -16.37269 -15.87920 -15.82157 -15.46320 -15.16392 -14.89471 -14.87039 -14.44244 -14.21792 -13.97165 -13.85257 -13.68732 -13.30818 -13.12649 -12.86162 -12.76446 -12.41760 -12.36937 -12.19235 -12.01765 -11.79997 -11.58807 -11.49198 -11.42147 -11.10695 -10.94441 -10.90646 -10.67674 -10.34124 -10.22478 -10.09859 -9.99833 -9.51990 -9.21370 -8.91605 -8.46566 -8.11400 -7.96183 -6.41966 -3.82630 1.45440 2.31519 2.47195 2.50378 3.00632 3.16545 3.27238 3.34719 3.90688 4.10208 4.30154 4.35461 4.46182 4.50981 4.64052 4.75700 4.85944 4.88531 5.09411 5.15037 5.16018 5.18656 5.25185 5.30908 5.41765 5.44663 5.58083 5.59799 5.75800 5.80164 5.84327 5.89819 5.94244 5.95061 5.98530 6.18201 6.21370 6.27979 6.40629 6.46010 6.80867 7.16438 7.20612 7.34516 7.55512 7.60633 8.06500 8.08455 8.61060 9.18008 9.54195 10.05522 10.75851 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033667 B = 0.001500 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.467556 B =18665.456120 C =18882.975897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.046 0.954 4 N -0.657 5.657 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.104 0.896 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.141 3.859 18 H 0.086 0.914 19 C -0.157 4.157 20 N -0.725 5.725 21 C 0.511 3.489 22 O -0.540 6.540 23 C -0.134 4.134 24 C -0.025 4.025 25 C -0.235 4.235 26 C 0.056 3.944 27 N -0.298 5.298 28 N -0.479 5.479 29 H 0.439 0.561 30 C 0.060 3.940 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.351 0.649 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.399 0.601 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.184 0.816 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.230 5.678 -28.147 29.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 H 0.064 0.936 4 N -0.291 5.291 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.122 0.878 11 C -0.179 4.179 12 N -0.544 5.544 13 Si 0.756 3.244 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.036 3.964 18 H 0.104 0.896 19 C -0.215 4.215 20 N -0.379 5.379 21 C 0.297 3.703 22 O -0.417 6.417 23 C -0.175 4.175 24 C -0.064 4.064 25 C -0.247 4.247 26 C -0.131 4.131 27 N -0.120 5.120 28 N -0.187 5.187 29 H 0.283 0.717 30 C -0.087 4.087 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.172 0.828 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.235 0.765 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.200 0.800 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.540 4.522 -28.972 30.043 hybrid contribution 0.880 1.461 1.253 2.117 sum -5.660 5.983 -27.719 28.916 Atomic orbital electron populations 1.21881 0.94509 1.02915 1.00853 1.21720 0.96499 0.95867 0.89354 0.93580 1.60189 1.34951 1.31703 1.02216 1.21732 1.01297 0.93886 0.91272 1.19789 0.84942 0.88206 0.84414 1.90529 1.55232 1.16095 1.84723 1.41867 1.57789 1.12441 1.07991 1.19763 1.39764 0.96508 0.86783 0.87837 1.25259 0.97674 0.95778 0.99235 1.69619 1.48771 1.08899 1.27066 0.85802 0.78212 0.79657 0.80693 1.19190 1.20788 1.20761 1.21064 0.98646 0.93428 0.83260 0.89619 1.22115 1.01992 0.94703 1.02688 1.46231 1.26037 1.57234 1.08383 1.20772 0.84885 0.79991 0.84642 1.90720 1.22595 1.42742 1.85599 1.21698 1.00995 1.02092 0.92692 1.19587 0.97373 1.01228 0.88224 1.20170 1.07461 0.94776 1.02293 1.23897 0.97121 0.99678 0.92380 1.77355 1.18749 0.92035 1.23854 1.46327 1.37080 1.13485 1.21829 0.71740 1.22467 0.97945 0.98590 0.89721 0.91166 0.92109 0.93252 0.82815 0.93855 0.89560 0.77495 0.91951 0.90095 0.92217 0.92854 0.76524 0.88874 0.89124 0.90569 0.90252 0.79955 0.80646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.93 37.16 0.33 -1.08 16 2 C 0.08 0.87 2.66 -67.71 -0.18 0.69 16 3 H 0.05 0.51 7.80 -51.93 -0.40 0.11 16 4 N -0.66 -10.01 5.14 -107.99 -0.55 -10.56 16 5 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 6 C 0.44 10.26 7.82 -10.98 -0.09 10.18 16 7 O -0.58 -15.62 15.78 5.55 0.09 -15.54 16 8 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 9 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 10 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 13 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.14 1.54 2.30 -67.93 -0.16 1.39 16 18 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 19 C -0.16 -1.83 9.02 37.16 0.33 -1.49 16 20 N -0.73 -6.22 4.99 -53.80 -0.27 -6.48 16 21 C 0.51 4.89 7.79 -10.98 -0.09 4.80 16 22 O -0.54 -7.41 15.64 5.56 0.09 -7.32 16 23 C -0.13 -0.81 5.68 -27.88 -0.16 -0.97 16 24 C -0.03 -0.17 4.99 -27.88 -0.14 -0.31 16 25 C -0.24 -1.54 5.35 -105.05 -0.56 -2.10 16 26 C 0.06 0.41 11.96 -17.36 -0.21 0.20 16 27 N -0.30 -2.52 12.70 30.63 0.39 -2.14 16 28 N -0.48 -2.73 7.36 30.45 0.22 -2.50 16 29 H 0.44 1.17 8.96 -182.60 -1.64 -0.47 16 30 C 0.06 0.31 11.90 -17.22 -0.21 0.11 16 31 H 0.07 0.75 6.56 -51.93 -0.34 0.41 16 32 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 33 H 0.05 0.34 6.29 -51.93 -0.33 0.02 16 34 H 0.35 5.69 7.61 -39.29 -0.30 5.39 16 35 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.09 1.35 7.44 -51.93 -0.39 0.96 16 37 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.08 1.07 7.17 -51.93 -0.37 0.70 16 40 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.40 2.44 6.58 -40.82 -0.27 2.18 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 46 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 47 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 48 H 0.18 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 398.54 15.07 6.01 6.01 Total: -1.00 -35.29 398.54 -8.13 -43.42 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -8.36 Total: 12.78 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.38 Total: 4.28 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.46 Total: -59.61 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.17 Total: -22.86 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.29 -8.13 -43.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717429651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.311 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds