Wall clock time and date at job start Tue Mar 31 2020 19:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 5 5 C 1.46906 * 110.99961 * 275.00030 * 4 2 1 6 6 C 1.50699 * 109.46941 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00122 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99486 * 180.02562 * 6 5 4 9 9 C 1.37100 * 119.99314 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00247 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99599 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00095 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99990 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46868 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46930 * 119.99745 * 13 11 9 16 16 H 1.48500 * 109.46906 * 239.99741 * 13 11 9 17 17 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 18 18 H 1.09001 * 109.46992 * 174.99449 * 17 2 1 19 19 C 1.52996 * 109.47276 * 294.99872 * 17 2 1 20 20 N 1.46510 * 109.47089 * 54.99980 * 17 2 1 21 21 C 1.34774 * 119.99669 * 154.99962 * 20 17 2 22 22 O 1.21277 * 120.00249 * 359.97438 * 21 20 17 23 23 C 1.50703 * 119.99604 * 180.02562 * 21 20 17 24 24 C 1.52998 * 109.46905 * 179.97438 * 23 21 20 25 25 C 1.50699 * 109.47033 * 179.97438 * 24 23 21 26 26 C 1.39867 * 126.04266 * 269.69471 * 25 24 23 27 27 N 1.30840 * 108.20752 * 179.81856 * 26 25 24 28 28 N 1.40093 * 108.19882 * 0.43759 * 27 26 25 29 29 H 0.96999 * 126.03300 * 179.70507 * 28 27 26 30 30 C 1.34947 * 107.92620 * 359.71695 * 28 27 26 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 33 33 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 34 34 H 1.00895 * 110.99835 * 151.05029 * 4 2 1 35 35 H 1.08996 * 109.46904 * 300.00505 * 5 4 2 36 36 H 1.08996 * 109.46971 * 60.00210 * 5 4 2 37 37 H 0.96999 * 120.00031 * 359.97438 * 8 6 5 38 38 H 0.96997 * 119.99888 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.47375 * 300.00219 * 19 17 2 40 40 H 1.09000 * 109.46912 * 60.00396 * 19 17 2 41 41 H 1.09004 * 109.47120 * 180.02562 * 19 17 2 42 42 H 0.96996 * 119.99772 * 335.00277 * 20 17 2 43 43 H 1.08999 * 109.47188 * 299.99543 * 23 21 20 44 44 H 1.08996 * 109.47321 * 59.99804 * 23 21 20 45 45 H 1.08997 * 109.47501 * 299.99660 * 24 23 21 46 46 H 1.09007 * 109.47408 * 60.00244 * 24 23 21 47 47 H 1.08006 * 125.89933 * 359.97438 * 26 25 24 48 48 H 1.07999 * 126.12578 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6986 3.4698 8 7 2.7286 0.1204 4.7324 9 6 3.1895 -0.5566 5.8319 10 1 3.4398 -1.6043 5.7553 11 6 3.3334 0.1052 7.0452 12 7 3.0283 1.3800 7.1386 13 14 3.9607 -0.8172 8.5436 14 1 4.2302 -2.2309 8.1775 15 1 5.2134 -0.1829 9.0267 16 1 2.9363 -0.7711 9.6178 17 6 2.0401 -0.7212 -1.2492 18 1 3.1264 -0.6441 -1.2952 19 6 1.6354 -2.1954 -1.1881 20 7 1.4559 -0.1035 -2.4424 21 6 2.0913 -0.1936 -3.6275 22 8 3.1469 -0.7855 -3.7062 23 6 1.4907 0.4423 -4.8548 24 6 2.4049 0.1954 -6.0564 25 6 1.8040 0.8307 -7.2837 26 6 0.9257 0.2163 -8.1822 27 7 0.6209 1.0832 -9.1136 28 7 1.3048 2.2754 -8.8422 29 1 1.2682 3.0874 -9.3716 30 6 2.0234 2.0946 -7.7144 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 2.9173 -1.1205 1.0287 35 1 2.7588 1.0461 2.1183 36 1 1.0871 0.6161 2.5526 37 1 2.5041 1.0615 4.8011 38 1 3.1291 1.8421 7.9855 39 1 2.0699 -2.6549 -0.3004 40 1 0.5490 -2.2723 -1.1422 41 1 1.9991 -2.7092 -2.0779 42 1 0.6119 0.3703 -2.3794 43 1 0.5108 0.0057 -5.0476 44 1 1.3851 1.5151 -4.6934 45 1 3.3847 0.6323 -5.8635 46 1 2.5109 -0.8775 -6.2180 47 1 0.5599 -0.7979 -8.1170 48 1 2.6595 2.8274 -7.2403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717429651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:35 Heat of formation + Delta-G solvation = -35.040371 kcal Electronic energy + Delta-G solvation = -27861.763596 eV Core-core repulsion = 23758.771670 eV Total energy + Delta-G solvation = -4102.991926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06064 -40.96643 -40.14487 -38.53251 -36.04368 -35.26887 -34.86437 -33.26632 -32.30472 -32.02155 -30.28682 -29.64116 -28.11655 -26.16883 -25.67591 -24.21471 -22.87414 -21.43977 -21.11045 -20.79857 -20.62861 -19.91566 -18.73094 -18.24527 -17.53532 -17.22918 -16.71489 -16.56039 -16.39284 -16.05253 -15.63233 -15.54168 -15.34115 -15.27176 -14.87943 -14.49362 -14.46490 -14.23657 -13.68476 -13.60575 -13.50498 -13.40796 -13.24007 -13.07040 -12.99913 -12.91644 -12.81682 -12.48093 -12.38777 -12.11022 -11.98684 -11.88488 -11.62590 -11.50245 -11.43945 -10.82141 -10.56769 -10.33606 -10.03636 -10.00102 -9.38774 -9.33958 -8.46028 -5.94399 1.02725 1.37219 1.42704 1.56720 1.76313 1.81892 2.06637 2.11766 2.23296 2.33142 3.00568 3.21537 3.51243 3.68342 3.82335 3.98192 4.02367 4.11532 4.23643 4.31684 4.32943 4.39218 4.48183 4.50814 4.61075 4.67016 4.69532 4.76904 4.82810 4.87896 4.89927 4.96220 5.06376 5.07085 5.32079 5.33582 5.40267 5.42341 5.54329 5.57840 5.75014 5.90620 6.11488 6.35960 6.49452 6.61259 6.65917 6.76227 7.14016 7.37840 7.57653 8.13218 8.71546 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033667 B = 0.001500 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.467556 B =18665.456120 C =18882.975897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.059 0.941 4 N -0.669 5.669 5 C 0.067 3.933 6 C 0.438 3.562 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.078 0.922 11 C -0.012 4.012 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.274 1.274 15 H -0.271 1.271 16 H -0.271 1.271 17 C 0.149 3.851 18 H 0.064 0.936 19 C -0.150 4.150 20 N -0.712 5.712 21 C 0.508 3.492 22 O -0.587 6.587 23 C -0.123 4.123 24 C -0.018 4.018 25 C -0.250 4.250 26 C 0.047 3.953 27 N -0.336 5.336 28 N -0.475 5.475 29 H 0.450 0.550 30 C 0.072 3.928 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.342 0.658 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.415 0.585 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.195 0.805 48 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 7.624 -28.750 30.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.076 0.924 4 N -0.303 5.303 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.211 4.211 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.199 1.199 15 H -0.196 1.196 16 H -0.196 1.196 17 C 0.043 3.957 18 H 0.082 0.918 19 C -0.208 4.208 20 N -0.367 5.367 21 C 0.297 3.703 22 O -0.467 6.467 23 C -0.163 4.163 24 C -0.057 4.057 25 C -0.262 4.262 26 C -0.139 4.139 27 N -0.159 5.159 28 N -0.184 5.184 29 H 0.296 0.704 30 C -0.077 4.077 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.162 0.838 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.253 0.747 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.211 0.789 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.681 6.524 -29.601 31.270 hybrid contribution 1.228 0.863 1.372 2.034 sum -6.453 7.387 -28.229 29.885 Atomic orbital electron populations 1.21895 0.92848 1.02823 1.02404 1.21771 0.97560 0.95890 0.87598 0.92353 1.60222 1.34579 1.32161 1.03332 1.21580 1.02396 0.93593 0.89006 1.20899 0.83162 0.87992 0.85439 1.90499 1.56570 1.18243 1.85586 1.41928 1.58329 1.12597 1.08222 1.19703 1.42018 0.95977 0.88626 0.90403 1.26007 0.97245 0.96609 1.01286 1.69672 1.48681 1.09668 1.28053 0.84888 0.78164 0.78038 0.77354 1.19890 1.19634 1.19594 1.20784 0.97554 0.93109 0.84229 0.91818 1.22022 1.02458 0.95123 1.01183 1.46070 1.26430 1.56780 1.07378 1.21435 0.84192 0.79149 0.85536 1.90710 1.24818 1.44862 1.86266 1.21691 1.01085 1.03252 0.90231 1.19447 0.97228 1.00219 0.88816 1.20171 1.08111 0.95455 1.02413 1.24197 0.97178 1.00223 0.92288 1.77301 1.20393 0.93253 1.24999 1.46381 1.36563 1.13355 1.22079 0.70359 1.22961 0.97043 0.98694 0.88975 0.92092 0.92545 0.89757 0.83826 0.91690 0.87484 0.76952 0.91327 0.92163 0.91059 0.93798 0.74656 0.87054 0.86666 0.91423 0.91850 0.78865 0.77539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.93 71.98 0.64 -1.73 16 2 C 0.08 1.70 2.66 44.92 0.12 1.81 16 3 H 0.06 1.12 7.80 -2.39 -0.02 1.10 16 4 N -0.67 -19.96 5.14 -495.57 -2.55 -22.51 16 5 C 0.07 2.19 5.97 85.56 0.51 2.70 16 6 C 0.44 20.58 7.82 87.66 0.69 21.27 16 7 O -0.62 -34.43 15.78 -3.06 -0.05 -34.48 16 8 N -0.57 -29.20 5.29 -306.98 -1.62 -30.82 16 9 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 10 H 0.08 4.75 7.16 -2.91 -0.02 4.72 16 11 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 12 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 13 Si 0.99 42.94 29.55 68.60 2.03 44.96 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 17 C 0.15 3.13 2.30 44.99 0.10 3.23 16 18 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 19 C -0.15 -3.47 9.02 71.98 0.65 -2.82 16 20 N -0.71 -10.63 4.99 -442.53 -2.21 -12.84 16 21 C 0.51 8.97 7.79 87.66 0.68 9.65 16 22 O -0.59 -16.12 15.64 -3.02 -0.05 -16.17 16 23 C -0.12 -1.17 5.68 29.85 0.17 -1.00 16 24 C -0.02 -0.22 4.99 29.85 0.15 -0.07 16 25 C -0.25 -2.85 5.35 -20.14 -0.11 -2.96 16 26 C 0.05 0.64 11.96 85.23 1.02 1.66 16 27 N -0.34 -5.39 12.70 -57.02 -0.72 -6.11 16 28 N -0.47 -4.57 7.36 -57.59 -0.42 -4.99 16 29 H 0.45 1.62 8.96 -213.33 -1.91 -0.29 16 30 C 0.07 0.57 11.90 83.54 0.99 1.56 16 31 H 0.06 1.16 6.56 -2.39 -0.02 1.14 16 32 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 33 H 0.08 0.81 6.29 -2.39 -0.02 0.80 16 34 H 0.34 11.27 7.61 -89.70 -0.68 10.59 16 35 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 36 H 0.11 3.11 7.44 -2.39 -0.02 3.09 16 37 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 38 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 39 H 0.06 1.65 7.17 -2.39 -0.02 1.63 16 40 H 0.07 1.46 6.56 -2.39 -0.02 1.45 16 41 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.41 3.55 6.58 -92.71 -0.61 2.94 16 43 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.07 0.94 8.10 -2.39 -0.02 0.93 16 46 H 0.06 0.98 8.10 -2.38 -0.02 0.96 16 47 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 48 H 0.21 0.18 8.06 -2.91 -0.02 0.16 16 Total: -1.00 -78.69 398.54 -1.32 -80.01 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -2.91 Total: 36.95 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.90 Total: 14.99 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -7.24 Total: -126.27 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -0.10 Total: -50.64 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -78.69 -1.32 -80.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717429651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.970 kcal (2) G-P(sol) polarization free energy of solvation -78.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds