Wall clock time and date at job start Tue Mar 31 2020 19:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47259 * 2 1 4 4 N 1.46898 * 109.47271 * 120.00266 * 2 1 3 5 5 C 1.46903 * 110.99673 * 274.99493 * 4 2 1 6 6 C 1.50701 * 109.47054 * 180.02562 * 5 4 2 7 7 O 1.21301 * 119.99879 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00204 * 180.02562 * 6 5 4 9 9 C 1.37099 * 120.00275 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99797 * 359.97438 * 9 8 6 11 11 C 1.38953 * 120.00254 * 180.02562 * 9 8 6 12 12 N 1.31407 * 119.99867 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99949 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46655 * 90.00432 * 13 11 9 15 15 H 1.48490 * 109.47178 * 210.00215 * 13 11 9 16 16 H 1.48496 * 109.47221 * 330.00629 * 13 11 9 17 17 C 1.53006 * 109.47086 * 240.00069 * 2 1 3 18 18 H 1.09002 * 109.47016 * 300.00081 * 17 2 1 19 19 C 1.53002 * 109.47148 * 179.97438 * 17 2 1 20 20 N 1.46504 * 109.46680 * 59.99769 * 17 2 1 21 21 C 1.34776 * 119.99735 * 204.99794 * 20 17 2 22 22 O 1.21282 * 119.99940 * 0.02562 * 21 20 17 23 23 C 1.50698 * 120.00035 * 179.97438 * 21 20 17 24 24 C 1.53006 * 109.47184 * 180.02562 * 23 21 20 25 25 C 1.50698 * 109.47184 * 180.02562 * 24 23 21 26 26 C 1.39866 * 126.04452 * 269.69748 * 25 24 23 27 27 N 1.30831 * 108.20191 * 179.81655 * 26 25 24 28 28 N 1.40083 * 108.20993 * 0.43734 * 27 26 25 29 29 H 0.96994 * 126.03925 * 179.69353 * 28 27 26 30 30 C 1.34949 * 107.92318 * 359.72042 * 28 27 26 31 31 H 1.09001 * 109.46839 * 299.99670 * 1 2 3 32 32 H 1.09000 * 109.47313 * 59.99785 * 1 2 3 33 33 H 1.08995 * 109.47355 * 180.02562 * 1 2 3 34 34 H 1.00897 * 111.00027 * 151.04911 * 4 2 1 35 35 H 1.08997 * 109.47813 * 299.99846 * 5 4 2 36 36 H 1.09007 * 109.47159 * 60.00605 * 5 4 2 37 37 H 0.96999 * 120.00258 * 0.02562 * 8 6 5 38 38 H 0.97001 * 119.99548 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.47041 * 60.00275 * 19 17 2 40 40 H 1.08997 * 109.46609 * 179.97438 * 19 17 2 41 41 H 1.08997 * 109.46779 * 300.00161 * 19 17 2 42 42 H 0.96998 * 120.00303 * 24.99968 * 20 17 2 43 43 H 1.09001 * 109.46665 * 60.00498 * 23 21 20 44 44 H 1.08993 * 109.47304 * 300.00054 * 23 21 20 45 45 H 1.09001 * 109.46801 * 300.00442 * 24 23 21 46 46 H 1.09001 * 109.46998 * 60.00038 * 24 23 21 47 47 H 1.08004 * 125.89322 * 359.97438 * 26 25 24 48 48 H 1.08000 * 126.12816 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5886 -0.5215 3.5556 7 8 2.8698 -1.6983 3.4696 8 7 2.7289 0.1205 4.7323 9 6 3.1898 -0.5563 5.8319 10 1 3.4401 -1.6041 5.7553 11 6 3.3339 0.1056 7.0451 12 7 3.7761 -0.5431 8.0989 13 14 2.9002 1.9177 7.1778 14 1 1.4706 2.0582 7.5544 15 1 3.7503 2.5554 8.2149 16 1 3.1348 2.5799 5.8695 17 6 2.0400 -0.7213 -1.2493 18 1 1.6766 -1.7489 -1.2493 19 6 3.5700 -0.7207 -1.2496 20 7 1.5515 -0.0306 -2.4454 21 6 1.4228 -0.7029 -3.6064 22 8 1.7109 -1.8798 -3.6608 23 6 0.9198 0.0074 -4.8367 24 6 0.8679 -0.9759 -6.0078 25 6 0.3655 -0.2655 -7.2382 26 6 -0.9705 -0.1554 -7.6372 27 7 -1.0097 0.5335 -8.7487 28 7 0.3030 0.8757 -9.0982 29 1 0.5715 1.3832 -9.8798 30 6 1.1279 0.3737 -8.1555 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.9173 -1.1205 1.0286 35 1 2.7589 1.0462 2.1182 36 1 1.0871 0.6163 2.5526 37 1 2.5037 1.0615 4.8012 38 1 3.8770 -0.0809 8.9458 39 1 3.9337 -1.2343 -0.3597 40 1 3.9332 -1.2349 -2.1394 41 1 3.9329 0.3071 -1.2498 42 1 1.3208 0.9106 -2.4018 43 1 1.5920 0.8297 -5.0817 44 1 -0.0795 0.3990 -4.6471 45 1 1.8671 -1.3680 -6.1975 46 1 0.1955 -1.7980 -5.7625 47 1 -1.8228 -0.5659 -7.1161 48 1 2.2038 0.4661 -8.1363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717429652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:39 Heat of formation + Delta-G solvation = -1.386895 kcal Electronic energy + Delta-G solvation = -27921.569586 eV Core-core repulsion = 23820.036984 eV Total energy + Delta-G solvation = -4101.532602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62886 -40.15735 -38.63962 -37.41536 -34.56566 -34.29761 -33.84848 -31.79219 -31.68620 -31.05236 -29.96764 -29.24910 -26.59550 -25.00514 -24.11754 -22.98151 -22.40693 -20.67501 -20.56009 -20.18811 -19.41284 -18.42955 -18.26575 -17.29799 -16.54135 -16.07729 -15.79454 -15.51011 -15.11146 -14.91265 -14.87893 -14.45821 -14.21742 -14.04599 -13.83901 -13.61308 -13.40279 -13.26850 -12.97417 -12.77592 -12.60432 -12.48631 -12.39396 -12.14270 -12.01928 -11.71824 -11.61383 -11.48571 -11.40491 -11.16687 -10.96215 -10.68090 -10.60589 -10.12123 -10.04406 -9.97824 -9.57904 -9.28033 -8.93995 -8.59226 -8.22228 -8.16942 -6.31445 -3.82906 1.43203 2.29275 2.44871 2.46770 2.93890 3.01030 3.05972 3.14178 3.73148 4.08483 4.12425 4.29366 4.43461 4.45719 4.58318 4.71496 4.74204 4.83471 4.93601 5.07174 5.07964 5.15286 5.21033 5.27225 5.31363 5.39284 5.44159 5.56501 5.59263 5.67019 5.79656 5.80963 5.83524 5.87476 5.90066 5.93177 6.08885 6.18816 6.26487 6.29680 6.78636 7.06615 7.18639 7.28298 7.54137 7.57884 8.04426 8.14258 8.59265 8.94693 9.41939 9.82109 10.81695 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033655 B = 0.001556 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.780453 B =17990.415599 C =18311.756763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 H 0.045 0.955 4 N -0.661 5.661 5 C 0.049 3.951 6 C 0.449 3.551 7 O -0.563 6.563 8 N -0.590 5.590 9 C -0.305 4.305 10 H 0.120 0.880 11 C 0.042 3.958 12 N -0.881 5.881 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.270 1.270 17 C 0.140 3.860 18 H 0.100 0.900 19 C -0.170 4.170 20 N -0.724 5.724 21 C 0.512 3.488 22 O -0.537 6.537 23 C -0.134 4.134 24 C -0.025 4.025 25 C -0.235 4.235 26 C 0.056 3.944 27 N -0.297 5.297 28 N -0.479 5.479 29 H 0.439 0.561 30 C 0.060 3.940 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.353 0.647 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.184 0.816 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 9.582 -31.799 33.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 H 0.063 0.937 4 N -0.297 5.297 5 C -0.084 4.084 6 C 0.235 3.765 7 O -0.445 6.445 8 N -0.230 5.230 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.161 4.161 12 N -0.521 5.521 13 Si 0.706 3.294 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.196 1.196 17 C 0.035 3.965 18 H 0.118 0.882 19 C -0.228 4.228 20 N -0.376 5.376 21 C 0.298 3.702 22 O -0.414 6.414 23 C -0.174 4.174 24 C -0.064 4.064 25 C -0.247 4.247 26 C -0.131 4.131 27 N -0.120 5.120 28 N -0.187 5.187 29 H 0.283 0.717 30 C -0.088 4.088 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.176 0.824 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.201 0.799 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.075 8.140 -32.378 34.127 hybrid contribution 1.088 2.560 0.470 2.821 sum -5.987 10.700 -31.909 34.183 Atomic orbital electron populations 1.21804 0.94116 1.02882 1.00945 1.21741 0.96551 0.95766 0.89247 0.93662 1.60162 1.35493 1.31742 1.02299 1.21756 1.01353 0.93950 0.91326 1.19693 0.84585 0.88233 0.83987 1.90577 1.53735 1.15840 1.84344 1.42197 1.60140 1.11048 1.09599 1.19443 1.40247 0.98000 0.85726 0.86252 1.25036 0.97476 0.98383 0.95232 1.69622 1.45055 1.36591 1.00823 0.86669 0.79329 0.84954 0.78399 1.19600 1.20205 1.19572 1.21063 0.93864 0.98325 0.83237 0.88216 1.22256 0.95302 1.02075 1.03208 1.46054 1.67815 1.13939 1.09782 1.20751 0.77428 0.87436 0.84537 1.90732 1.49649 1.16017 1.84969 1.21696 1.03138 0.99761 0.92847 1.19590 1.02361 0.95967 0.88514 1.20171 0.92870 1.10202 1.01451 1.23902 0.97737 0.97555 0.93864 1.77352 0.98178 1.19548 1.16884 1.46326 1.04690 1.45255 1.22456 0.71746 1.22462 0.97596 0.98000 0.90709 0.92423 0.92862 0.91635 0.82404 0.93748 0.89411 0.79722 0.91616 0.90864 0.91649 0.92622 0.76784 0.89153 0.88855 0.90586 0.90192 0.79928 0.80674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.26 37.16 0.34 -1.07 16 2 C 0.08 0.84 2.28 -67.71 -0.15 0.68 16 3 H 0.05 0.43 7.80 -51.93 -0.40 0.03 16 4 N -0.66 -9.84 5.93 -107.99 -0.64 -10.48 16 5 C 0.05 0.78 5.96 -4.97 -0.03 0.75 16 6 C 0.45 10.07 7.82 -10.99 -0.09 9.98 16 7 O -0.56 -15.06 15.78 5.54 0.09 -14.97 16 8 N -0.59 -13.91 5.09 -10.96 -0.06 -13.97 16 9 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 10 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 11 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 12 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 13 Si 0.88 19.17 27.74 -169.99 -4.71 14.46 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 17 C 0.14 1.45 2.29 -67.92 -0.16 1.30 16 18 H 0.10 1.31 7.58 -51.93 -0.39 0.91 16 19 C -0.17 -1.77 9.25 37.16 0.34 -1.43 16 20 N -0.72 -5.64 4.38 -53.80 -0.24 -5.87 16 21 C 0.51 4.59 7.79 -10.99 -0.09 4.50 16 22 O -0.54 -7.13 15.64 5.56 0.09 -7.04 16 23 C -0.13 -0.74 5.68 -27.88 -0.16 -0.90 16 24 C -0.03 -0.16 4.99 -27.88 -0.14 -0.30 16 25 C -0.24 -1.46 5.35 -105.05 -0.56 -2.03 16 26 C 0.06 0.40 11.96 -17.37 -0.21 0.19 16 27 N -0.30 -2.46 12.70 30.62 0.39 -2.07 16 28 N -0.48 -2.60 7.36 30.45 0.22 -2.38 16 29 H 0.44 1.05 8.96 -182.62 -1.64 -0.58 16 30 C 0.06 0.29 11.90 -17.22 -0.20 0.09 16 31 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 32 H 0.05 0.41 7.44 -51.93 -0.39 0.03 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.35 5.51 5.87 -39.29 -0.23 5.28 16 35 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 36 H 0.09 1.25 7.44 -51.93 -0.39 0.87 16 37 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.07 0.84 6.21 -51.93 -0.32 0.51 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.40 2.04 8.39 -40.82 -0.34 1.70 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 46 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 47 H 0.18 0.89 8.06 -52.48 -0.42 0.47 16 48 H 0.18 0.32 8.06 -52.49 -0.42 -0.10 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -36.91 399.19 -7.91 -44.83 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -8.50 Total: 12.32 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.34 Total: 4.04 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.45 Total: -59.65 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.17 Total: -22.01 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.91 -7.91 -44.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717429652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.439 kcal (2) G-P(sol) polarization free energy of solvation -36.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds