Wall clock time and date at job start Tue Mar 31 2020 19:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47259 * 2 1 4 4 N 1.46898 * 109.47271 * 120.00266 * 2 1 3 5 5 C 1.46903 * 110.99673 * 274.99493 * 4 2 1 6 6 C 1.50701 * 109.47054 * 180.02562 * 5 4 2 7 7 O 1.21301 * 119.99879 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00204 * 180.02562 * 6 5 4 9 9 C 1.37099 * 120.00275 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99797 * 359.97438 * 9 8 6 11 11 C 1.38953 * 120.00254 * 180.02562 * 9 8 6 12 12 N 1.31407 * 119.99867 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99949 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46655 * 90.00432 * 13 11 9 15 15 H 1.48490 * 109.47178 * 210.00215 * 13 11 9 16 16 H 1.48496 * 109.47221 * 330.00629 * 13 11 9 17 17 C 1.53006 * 109.47086 * 240.00069 * 2 1 3 18 18 H 1.09002 * 109.47016 * 300.00081 * 17 2 1 19 19 C 1.53002 * 109.47148 * 179.97438 * 17 2 1 20 20 N 1.46504 * 109.46680 * 59.99769 * 17 2 1 21 21 C 1.34776 * 119.99735 * 204.99794 * 20 17 2 22 22 O 1.21282 * 119.99940 * 0.02562 * 21 20 17 23 23 C 1.50698 * 120.00035 * 179.97438 * 21 20 17 24 24 C 1.53006 * 109.47184 * 180.02562 * 23 21 20 25 25 C 1.50698 * 109.47184 * 180.02562 * 24 23 21 26 26 C 1.39866 * 126.04452 * 269.69748 * 25 24 23 27 27 N 1.30831 * 108.20191 * 179.81655 * 26 25 24 28 28 N 1.40083 * 108.20993 * 0.43734 * 27 26 25 29 29 H 0.96994 * 126.03925 * 179.69353 * 28 27 26 30 30 C 1.34949 * 107.92318 * 359.72042 * 28 27 26 31 31 H 1.09001 * 109.46839 * 299.99670 * 1 2 3 32 32 H 1.09000 * 109.47313 * 59.99785 * 1 2 3 33 33 H 1.08995 * 109.47355 * 180.02562 * 1 2 3 34 34 H 1.00897 * 111.00027 * 151.04911 * 4 2 1 35 35 H 1.08997 * 109.47813 * 299.99846 * 5 4 2 36 36 H 1.09007 * 109.47159 * 60.00605 * 5 4 2 37 37 H 0.96999 * 120.00258 * 0.02562 * 8 6 5 38 38 H 0.97001 * 119.99548 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.47041 * 60.00275 * 19 17 2 40 40 H 1.08997 * 109.46609 * 179.97438 * 19 17 2 41 41 H 1.08997 * 109.46779 * 300.00161 * 19 17 2 42 42 H 0.96998 * 120.00303 * 24.99968 * 20 17 2 43 43 H 1.09001 * 109.46665 * 60.00498 * 23 21 20 44 44 H 1.08993 * 109.47304 * 300.00054 * 23 21 20 45 45 H 1.09001 * 109.46801 * 300.00442 * 24 23 21 46 46 H 1.09001 * 109.46998 * 60.00038 * 24 23 21 47 47 H 1.08004 * 125.89322 * 359.97438 * 26 25 24 48 48 H 1.08000 * 126.12816 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5886 -0.5215 3.5556 7 8 2.8698 -1.6983 3.4696 8 7 2.7289 0.1205 4.7323 9 6 3.1898 -0.5563 5.8319 10 1 3.4401 -1.6041 5.7553 11 6 3.3339 0.1056 7.0451 12 7 3.7761 -0.5431 8.0989 13 14 2.9002 1.9177 7.1778 14 1 1.4706 2.0582 7.5544 15 1 3.7503 2.5554 8.2149 16 1 3.1348 2.5799 5.8695 17 6 2.0400 -0.7213 -1.2493 18 1 1.6766 -1.7489 -1.2493 19 6 3.5700 -0.7207 -1.2496 20 7 1.5515 -0.0306 -2.4454 21 6 1.4228 -0.7029 -3.6064 22 8 1.7109 -1.8798 -3.6608 23 6 0.9198 0.0074 -4.8367 24 6 0.8679 -0.9759 -6.0078 25 6 0.3655 -0.2655 -7.2382 26 6 -0.9705 -0.1554 -7.6372 27 7 -1.0097 0.5335 -8.7487 28 7 0.3030 0.8757 -9.0982 29 1 0.5715 1.3832 -9.8798 30 6 1.1279 0.3737 -8.1555 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.9173 -1.1205 1.0286 35 1 2.7589 1.0462 2.1182 36 1 1.0871 0.6163 2.5526 37 1 2.5037 1.0615 4.8012 38 1 3.8770 -0.0809 8.9458 39 1 3.9337 -1.2343 -0.3597 40 1 3.9332 -1.2349 -2.1394 41 1 3.9329 0.3071 -1.2498 42 1 1.3208 0.9106 -2.4018 43 1 1.5920 0.8297 -5.0817 44 1 -0.0795 0.3990 -4.6471 45 1 1.8671 -1.3680 -6.1975 46 1 0.1955 -1.7980 -5.7625 47 1 -1.8228 -0.5659 -7.1161 48 1 2.2038 0.4661 -8.1363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717429652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:38 Heat of formation + Delta-G solvation = -32.334845 kcal Electronic energy + Delta-G solvation = -27922.911590 eV Core-core repulsion = 23820.036984 eV Total energy + Delta-G solvation = -4102.874606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05935 -40.94635 -40.27807 -38.50444 -36.06809 -35.28848 -34.85656 -33.73874 -32.27539 -31.94006 -30.83710 -29.78622 -28.13147 -25.73314 -25.57981 -23.87372 -22.86811 -21.48788 -21.27192 -21.23474 -20.71651 -20.28835 -18.71642 -18.20873 -17.48721 -17.41557 -16.86722 -16.60541 -16.42441 -15.73743 -15.51777 -15.36565 -15.34832 -15.02774 -14.97953 -14.63756 -14.41705 -14.33552 -14.15606 -13.94806 -13.63803 -13.46632 -13.27385 -13.12694 -12.93714 -12.88831 -12.62811 -12.54498 -12.39692 -12.27189 -11.97570 -11.95977 -11.56601 -11.49743 -11.43552 -10.81487 -10.56656 -10.41912 -10.23627 -10.04142 -9.38010 -9.32203 -8.39907 -6.01147 1.03000 1.31298 1.37654 1.46374 1.78162 1.82083 1.97235 2.11954 2.23826 2.25178 2.82762 3.16503 3.43359 3.62860 3.83153 3.99032 4.03239 4.11708 4.17776 4.22732 4.32457 4.38942 4.43983 4.47322 4.58557 4.62324 4.68138 4.75767 4.77810 4.87033 4.91202 4.96380 5.02692 5.07594 5.23643 5.33355 5.40813 5.44464 5.52676 5.57002 5.75216 5.92790 6.08553 6.38329 6.49782 6.61118 6.68014 6.76523 6.89604 7.40611 7.41232 7.98407 8.77851 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033655 B = 0.001556 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.780453 B =17990.415599 C =18311.756763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.084 3.916 3 H 0.076 0.924 4 N -0.685 5.685 5 C 0.064 3.936 6 C 0.447 3.553 7 O -0.616 6.616 8 N -0.590 5.590 9 C -0.331 4.331 10 H 0.053 0.947 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.258 1.258 15 H -0.276 1.276 16 H -0.228 1.228 17 C 0.147 3.853 18 H 0.064 0.936 19 C -0.164 4.164 20 N -0.709 5.709 21 C 0.510 3.490 22 O -0.587 6.587 23 C -0.122 4.122 24 C -0.019 4.019 25 C -0.250 4.250 26 C 0.047 3.953 27 N -0.337 5.337 28 N -0.475 5.475 29 H 0.450 0.550 30 C 0.072 3.928 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.345 0.655 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.416 0.584 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.194 0.806 48 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.958 14.419 -33.732 37.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 H 0.094 0.906 4 N -0.321 5.321 5 C -0.068 4.068 6 C 0.235 3.765 7 O -0.501 6.501 8 N -0.231 5.231 9 C -0.460 4.460 10 H 0.071 0.929 11 C -0.214 4.214 12 N -0.576 5.576 13 Si 0.786 3.214 14 H -0.182 1.182 15 H -0.201 1.201 16 H -0.151 1.151 17 C 0.042 3.958 18 H 0.083 0.917 19 C -0.223 4.223 20 N -0.362 5.362 21 C 0.298 3.702 22 O -0.467 6.467 23 C -0.162 4.162 24 C -0.058 4.058 25 C -0.261 4.261 26 C -0.139 4.139 27 N -0.160 5.160 28 N -0.184 5.184 29 H 0.296 0.704 30 C -0.076 4.076 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.167 0.833 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.254 0.746 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.211 0.789 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.879 13.035 -34.356 37.581 hybrid contribution 1.373 0.887 1.009 1.921 sum -6.506 13.922 -33.347 36.718 Atomic orbital electron populations 1.21816 0.93499 1.01788 1.02477 1.21781 0.96806 0.96670 0.87309 0.90586 1.60154 1.35391 1.32808 1.03777 1.21682 1.03154 0.93709 0.88267 1.21043 0.82282 0.87928 0.85271 1.90558 1.55361 1.18722 1.85417 1.42006 1.60527 1.11820 1.08783 1.19015 1.42493 0.96062 0.88417 0.92866 1.26143 0.96331 1.05145 0.93774 1.69813 1.46271 1.39696 1.01816 0.85344 0.79356 0.76330 0.80339 1.18205 1.20125 1.15115 1.20769 0.93756 0.96947 0.84374 0.91725 1.22187 0.95316 1.02920 1.01871 1.45871 1.67086 1.14651 1.08602 1.21406 0.76398 0.86897 0.85497 1.90723 1.51855 1.18399 1.85725 1.21680 1.04483 0.99580 0.90409 1.19451 1.01379 0.95780 0.89163 1.20173 0.92785 1.11224 1.01947 1.24193 0.98688 0.97307 0.93738 1.77297 0.99904 1.20977 1.17797 1.46379 1.04028 1.45023 1.22949 0.70361 1.22962 0.98855 0.96285 0.89546 0.92189 0.89991 0.94100 0.83270 0.90025 0.86668 0.77385 0.91172 0.92416 0.92822 0.90545 0.74607 0.86583 0.87043 0.91435 0.91969 0.78925 0.77491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.26 71.98 0.67 -1.73 16 2 C 0.08 1.56 2.28 44.92 0.10 1.67 16 3 H 0.08 1.03 7.80 -2.39 -0.02 1.01 16 4 N -0.69 -19.38 5.93 -495.56 -2.94 -22.32 16 5 C 0.06 1.84 5.96 85.56 0.51 2.35 16 6 C 0.45 19.89 7.82 87.66 0.69 20.58 16 7 O -0.62 -34.34 15.78 -3.09 -0.05 -34.39 16 8 N -0.59 -27.37 5.09 -306.98 -1.56 -28.93 16 9 C -0.33 -19.35 10.16 84.04 0.85 -18.50 16 10 H 0.05 3.74 7.39 -2.91 -0.02 3.71 16 11 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 12 N -0.94 -56.39 13.96 21.66 0.30 -56.09 16 13 Si 0.97 38.07 27.74 68.60 1.90 39.98 16 14 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 15 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 16 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 17 C 0.15 2.87 2.29 44.99 0.10 2.97 16 18 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 19 C -0.16 -3.26 9.25 71.98 0.67 -2.59 16 20 N -0.71 -9.20 4.38 -442.51 -1.94 -11.14 16 21 C 0.51 8.35 7.79 87.66 0.68 9.03 16 22 O -0.59 -15.76 15.64 -3.04 -0.05 -15.81 16 23 C -0.12 -1.02 5.68 29.85 0.17 -0.85 16 24 C -0.02 -0.22 4.99 29.85 0.15 -0.07 16 25 C -0.25 -2.69 5.35 -20.14 -0.11 -2.79 16 26 C 0.05 0.61 11.96 85.24 1.02 1.63 16 27 N -0.34 -5.24 12.70 -57.03 -0.72 -5.96 16 28 N -0.47 -4.27 7.36 -57.58 -0.42 -4.70 16 29 H 0.45 1.33 8.96 -213.34 -1.91 -0.58 16 30 C 0.07 0.52 11.90 83.54 0.99 1.51 16 31 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 32 H 0.08 0.94 7.44 -2.39 -0.02 0.92 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.35 10.72 5.87 -89.70 -0.53 10.19 16 35 H 0.08 1.81 8.06 -2.39 -0.02 1.79 16 36 H 0.12 2.76 7.44 -2.38 -0.02 2.74 16 37 H 0.39 14.74 5.76 -92.71 -0.53 14.20 16 38 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.06 1.33 6.21 -2.39 -0.01 1.31 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.42 2.44 8.39 -92.71 -0.78 1.66 16 43 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.89 8.10 -2.39 -0.02 0.87 16 46 H 0.06 0.93 8.10 -2.39 -0.02 0.92 16 47 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 48 H 0.21 0.00 8.06 -2.91 -0.02 -0.03 16 Total: -1.00 -89.02 399.19 -1.31 -90.33 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -2.79 Total: 36.22 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 6.96 Total: 12.82 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -7.29 Total: -129.14 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.10 Total: -50.20 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.90 Total: 39.98 kcal Total: -89.02 -1.31 -90.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717429652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.992 kcal (2) G-P(sol) polarization free energy of solvation -89.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds