Wall clock time and date at job start Tue Mar 31 2020 19:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47485 * 2 1 4 4 N 1.46904 * 109.46901 * 240.00083 * 2 1 3 5 5 C 1.46903 * 110.99905 * 85.00405 * 4 2 1 6 6 C 1.50698 * 109.47124 * 179.97438 * 5 4 2 7 7 O 1.21297 * 119.99575 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00207 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99967 * 180.02562 * 8 6 5 10 10 H 1.08002 * 120.00217 * 359.97438 * 9 8 6 11 11 C 1.38951 * 119.99730 * 179.97438 * 9 8 6 12 12 N 1.31409 * 120.00233 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99827 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47021 * 59.99751 * 13 11 9 15 15 H 1.48501 * 109.47099 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46895 * 299.99851 * 13 11 9 17 17 C 1.53003 * 109.47359 * 120.00278 * 2 1 3 18 18 H 1.08996 * 109.47192 * 185.00020 * 17 2 1 19 19 C 1.52998 * 109.47024 * 64.99466 * 17 2 1 20 20 N 1.46504 * 109.46818 * 304.99969 * 17 2 1 21 21 C 1.34776 * 120.00102 * 204.99838 * 20 17 2 22 22 O 1.21284 * 119.99993 * 0.02562 * 21 20 17 23 23 C 1.50698 * 120.00297 * 179.97438 * 21 20 17 24 24 C 1.52998 * 109.47192 * 180.02562 * 23 21 20 25 25 C 1.50698 * 109.47192 * 179.97438 * 24 23 21 26 26 C 1.39874 * 126.04031 * 269.99886 * 25 24 23 27 27 N 1.30836 * 108.20052 * 179.73886 * 26 25 24 28 28 N 1.40084 * 108.20904 * 0.40640 * 27 26 25 29 29 H 0.97001 * 126.04219 * 179.85882 * 28 27 26 30 30 C 1.34947 * 107.92164 * 359.58781 * 28 27 26 31 31 H 1.09009 * 109.47307 * 300.00109 * 1 2 3 32 32 H 1.09000 * 109.47426 * 59.99619 * 1 2 3 33 33 H 1.08997 * 109.47566 * 180.02562 * 1 2 3 34 34 H 1.00906 * 110.99582 * 208.94943 * 4 2 1 35 35 H 1.08999 * 109.46643 * 299.99867 * 5 4 2 36 36 H 1.08993 * 109.47266 * 59.99652 * 5 4 2 37 37 H 0.97000 * 119.99991 * 359.97438 * 8 6 5 38 38 H 0.97000 * 120.00007 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.47085 * 179.97438 * 19 17 2 40 40 H 1.08996 * 109.47588 * 300.00311 * 19 17 2 41 41 H 1.09003 * 109.46913 * 60.00364 * 19 17 2 42 42 H 0.97001 * 120.00455 * 24.99701 * 20 17 2 43 43 H 1.08994 * 109.46963 * 59.99584 * 23 21 20 44 44 H 1.09004 * 109.46771 * 299.99960 * 23 21 20 45 45 H 1.09007 * 109.47384 * 60.00098 * 24 23 21 46 46 H 1.09002 * 109.46954 * 300.00115 * 24 23 21 47 47 H 1.08001 * 125.89534 * 0.02562 * 26 25 24 48 48 H 1.08007 * 126.12498 * 180.26712 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5884 -0.5214 -3.5558 7 8 2.8695 -1.6982 -3.4697 8 7 2.7296 0.1209 -4.7321 9 6 3.1894 -0.5562 -5.8320 10 1 3.4389 -1.6042 -5.7557 11 6 3.3344 0.1060 -7.0450 12 7 3.0304 1.3810 -7.1380 13 14 3.9617 -0.8164 -8.5434 14 1 3.0406 -1.9387 -8.8552 15 1 4.0246 0.1085 -9.7035 16 1 5.3179 -1.3524 -8.2629 17 6 2.0400 -0.7213 1.2492 18 1 3.1263 -0.6444 1.2951 19 6 1.6351 -2.1955 1.1879 20 7 1.4558 -0.1037 2.4424 21 6 2.0912 -0.1938 3.6276 22 8 3.1468 -0.7859 3.7062 23 6 1.4906 0.4419 4.8548 24 6 2.4049 0.1948 6.0564 25 6 1.8046 0.8311 7.2836 26 6 2.0324 2.1376 7.7282 27 7 1.3351 2.3254 8.8192 28 7 0.6477 1.1397 9.1089 29 1 0.0557 0.9930 9.8631 30 6 0.9500 0.2396 8.1500 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 2.9173 -1.1205 -1.0288 35 1 1.0870 0.6164 -2.5525 36 1 2.7588 1.0462 -2.1182 37 1 2.5051 1.0621 -4.8008 38 1 3.1313 1.8431 -7.9849 39 1 1.9989 -2.7095 2.0776 40 1 0.5489 -2.2724 1.1420 41 1 2.0698 -2.6550 0.3001 42 1 0.6118 0.3701 2.3795 43 1 0.5107 0.0054 5.0475 44 1 1.3852 1.5148 4.6935 45 1 3.3847 0.6317 5.8635 46 1 2.5108 -0.8780 6.2178 47 1 2.6699 2.8669 7.2506 48 1 0.5764 -0.7717 8.0855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717429653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:41 Heat of formation + Delta-G solvation = -6.972053 kcal Electronic energy + Delta-G solvation = -27860.383137 eV Core-core repulsion = 23758.608345 eV Total energy + Delta-G solvation = -4101.774792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60614 -40.12695 -38.46916 -37.36210 -34.49803 -34.26760 -33.77009 -31.76557 -31.34225 -30.99848 -29.52395 -28.92950 -26.56937 -25.15530 -24.37892 -23.22050 -22.39677 -20.71419 -20.26583 -19.75457 -19.29775 -18.24862 -17.92576 -17.32857 -16.39621 -15.87807 -15.78170 -15.46662 -15.16356 -14.91237 -14.85914 -14.44233 -14.17157 -13.98154 -13.89075 -13.68727 -13.35176 -13.04827 -12.88970 -12.71323 -12.47276 -12.34923 -12.18939 -12.02634 -11.79666 -11.58425 -11.48547 -11.41836 -11.06974 -10.93935 -10.89640 -10.67768 -10.43613 -10.20780 -10.09762 -9.99885 -9.49344 -9.21350 -8.91634 -8.46011 -8.10913 -7.95599 -6.41107 -3.81943 1.45430 2.31634 2.47120 2.50375 3.00689 3.20950 3.26558 3.31161 3.91386 4.10713 4.30500 4.35248 4.45982 4.51445 4.63587 4.76340 4.85745 4.88606 5.09519 5.15046 5.16775 5.18729 5.25881 5.30850 5.41187 5.44976 5.58049 5.60010 5.75968 5.80017 5.84525 5.89788 5.94595 5.95398 5.98149 6.18149 6.21447 6.28301 6.40317 6.45513 6.80818 7.16825 7.20755 7.34535 7.55660 7.60997 8.06634 8.08477 8.61758 9.18409 9.54754 10.06221 10.76519 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033687 B = 0.001500 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.981256 B =18664.544119 C =18879.008339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.047 0.953 4 N -0.657 5.657 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.141 3.859 18 H 0.086 0.914 19 C -0.157 4.157 20 N -0.725 5.725 21 C 0.511 3.489 22 O -0.540 6.540 23 C -0.134 4.134 24 C -0.025 4.025 25 C -0.235 4.235 26 C 0.056 3.944 27 N -0.297 5.297 28 N -0.479 5.479 29 H 0.439 0.561 30 C 0.060 3.940 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.351 0.649 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.399 0.601 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.184 0.816 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 2.359 28.881 30.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 H 0.065 0.935 4 N -0.291 5.291 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.036 3.964 18 H 0.104 0.896 19 C -0.215 4.215 20 N -0.379 5.379 21 C 0.297 3.703 22 O -0.417 6.417 23 C -0.175 4.175 24 C -0.064 4.064 25 C -0.247 4.247 26 C -0.131 4.131 27 N -0.120 5.120 28 N -0.187 5.187 29 H 0.283 0.717 30 C -0.088 4.088 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.172 0.828 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.201 0.799 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.132 1.849 29.552 30.706 hybrid contribution 0.292 0.411 -1.003 1.122 sum -7.840 2.259 28.549 29.692 Atomic orbital electron populations 1.21878 0.94525 1.02877 1.00865 1.21721 0.96486 0.95906 0.89347 0.93534 1.60197 1.34945 1.31702 1.02218 1.21730 1.01300 0.93891 0.91265 1.19785 0.84982 0.88201 0.84418 1.90528 1.55280 1.16125 1.84725 1.41850 1.57754 1.12412 1.07985 1.19662 1.40051 0.96440 0.86828 0.87956 1.25254 0.97628 0.95767 0.99221 1.69602 1.48623 1.08860 1.27253 0.85918 0.79439 0.78835 0.80029 1.19891 1.20992 1.19910 1.21063 0.98674 0.93393 0.83269 0.89596 1.22113 1.01958 0.94733 1.02670 1.46230 1.26042 1.57230 1.08378 1.20773 0.84894 0.79972 0.84655 1.90722 1.22568 1.42752 1.85618 1.21697 1.00740 1.02307 0.92735 1.19587 0.97710 1.00860 0.88257 1.20173 1.06854 0.95616 1.02039 1.23903 0.98678 0.96732 0.93761 1.77352 1.11973 1.04449 1.18194 1.46325 1.39323 1.09581 1.23504 0.71748 1.22462 0.99019 0.96591 0.90678 0.93255 0.92099 0.91199 0.82819 0.89567 0.93834 0.77482 0.91838 0.92894 0.92244 0.90089 0.76525 0.89097 0.88901 0.90253 0.90563 0.79945 0.80654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.93 37.15 0.33 -1.08 16 2 C 0.08 0.87 2.66 -67.71 -0.18 0.69 16 3 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 4 N -0.66 -10.03 5.14 -107.99 -0.55 -10.58 16 5 C 0.05 0.87 5.97 -4.98 -0.03 0.84 16 6 C 0.44 10.28 7.82 -10.99 -0.09 10.19 16 7 O -0.58 -15.66 15.78 5.54 0.09 -15.57 16 8 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 9 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 10 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 12 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 13 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C 0.14 1.55 2.30 -67.93 -0.16 1.39 16 18 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 19 C -0.16 -1.81 9.02 37.16 0.33 -1.48 16 20 N -0.73 -6.22 4.99 -53.80 -0.27 -6.49 16 21 C 0.51 4.89 7.79 -10.99 -0.09 4.80 16 22 O -0.54 -7.42 15.64 5.55 0.09 -7.33 16 23 C -0.13 -0.81 5.68 -27.88 -0.16 -0.97 16 24 C -0.03 -0.17 4.99 -27.88 -0.14 -0.31 16 25 C -0.24 -1.54 5.35 -105.05 -0.56 -2.10 16 26 C 0.06 0.41 11.96 -17.36 -0.21 0.20 16 27 N -0.30 -2.54 12.70 30.63 0.39 -2.15 16 28 N -0.48 -2.71 7.36 30.45 0.22 -2.49 16 29 H 0.44 1.15 8.96 -182.61 -1.64 -0.49 16 30 C 0.06 0.31 11.90 -17.22 -0.21 0.10 16 31 H 0.05 0.34 6.29 -51.92 -0.33 0.02 16 32 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 33 H 0.07 0.74 6.56 -51.93 -0.34 0.40 16 34 H 0.35 5.70 7.61 -39.29 -0.30 5.40 16 35 H 0.09 1.36 7.44 -51.93 -0.39 0.97 16 36 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 37 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.63 6.56 -51.93 -0.34 0.29 16 41 H 0.08 1.07 7.17 -51.93 -0.37 0.69 16 42 H 0.40 2.45 6.58 -40.82 -0.27 2.18 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 46 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 47 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 48 H 0.18 0.36 8.06 -52.48 -0.42 -0.06 16 LS Contribution 398.54 15.07 6.01 6.01 Total: -1.00 -35.27 398.54 -8.13 -43.41 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -8.36 Total: 12.86 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.38 Total: 4.29 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.46 Total: -59.68 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.17 Total: -22.90 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.27 -8.13 -43.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717429653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.437 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds