Wall clock time and date at job start Tue Mar 31 2020 19:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47485 * 2 1 4 4 N 1.46904 * 109.46901 * 240.00083 * 2 1 3 5 5 C 1.46903 * 110.99905 * 85.00405 * 4 2 1 6 6 C 1.50698 * 109.47124 * 179.97438 * 5 4 2 7 7 O 1.21297 * 119.99575 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00207 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99967 * 180.02562 * 8 6 5 10 10 H 1.08002 * 120.00217 * 359.97438 * 9 8 6 11 11 C 1.38951 * 119.99730 * 179.97438 * 9 8 6 12 12 N 1.31409 * 120.00233 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99827 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47021 * 59.99751 * 13 11 9 15 15 H 1.48501 * 109.47099 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46895 * 299.99851 * 13 11 9 17 17 C 1.53003 * 109.47359 * 120.00278 * 2 1 3 18 18 H 1.08996 * 109.47192 * 185.00020 * 17 2 1 19 19 C 1.52998 * 109.47024 * 64.99466 * 17 2 1 20 20 N 1.46504 * 109.46818 * 304.99969 * 17 2 1 21 21 C 1.34776 * 120.00102 * 204.99838 * 20 17 2 22 22 O 1.21284 * 119.99993 * 0.02562 * 21 20 17 23 23 C 1.50698 * 120.00297 * 179.97438 * 21 20 17 24 24 C 1.52998 * 109.47192 * 180.02562 * 23 21 20 25 25 C 1.50698 * 109.47192 * 179.97438 * 24 23 21 26 26 C 1.39874 * 126.04031 * 269.99886 * 25 24 23 27 27 N 1.30836 * 108.20052 * 179.73886 * 26 25 24 28 28 N 1.40084 * 108.20904 * 0.40640 * 27 26 25 29 29 H 0.97001 * 126.04219 * 179.85882 * 28 27 26 30 30 C 1.34947 * 107.92164 * 359.58781 * 28 27 26 31 31 H 1.09009 * 109.47307 * 300.00109 * 1 2 3 32 32 H 1.09000 * 109.47426 * 59.99619 * 1 2 3 33 33 H 1.08997 * 109.47566 * 180.02562 * 1 2 3 34 34 H 1.00906 * 110.99582 * 208.94943 * 4 2 1 35 35 H 1.08999 * 109.46643 * 299.99867 * 5 4 2 36 36 H 1.08993 * 109.47266 * 59.99652 * 5 4 2 37 37 H 0.97000 * 119.99991 * 359.97438 * 8 6 5 38 38 H 0.97000 * 120.00007 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.47085 * 179.97438 * 19 17 2 40 40 H 1.08996 * 109.47588 * 300.00311 * 19 17 2 41 41 H 1.09003 * 109.46913 * 60.00364 * 19 17 2 42 42 H 0.97001 * 120.00455 * 24.99701 * 20 17 2 43 43 H 1.08994 * 109.46963 * 59.99584 * 23 21 20 44 44 H 1.09004 * 109.46771 * 299.99960 * 23 21 20 45 45 H 1.09007 * 109.47384 * 60.00098 * 24 23 21 46 46 H 1.09002 * 109.46954 * 300.00115 * 24 23 21 47 47 H 1.08001 * 125.89534 * 0.02562 * 26 25 24 48 48 H 1.08007 * 126.12498 * 180.26712 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5884 -0.5214 -3.5558 7 8 2.8695 -1.6982 -3.4697 8 7 2.7296 0.1209 -4.7321 9 6 3.1894 -0.5562 -5.8320 10 1 3.4389 -1.6042 -5.7557 11 6 3.3344 0.1060 -7.0450 12 7 3.0304 1.3810 -7.1380 13 14 3.9617 -0.8164 -8.5434 14 1 3.0406 -1.9387 -8.8552 15 1 4.0246 0.1085 -9.7035 16 1 5.3179 -1.3524 -8.2629 17 6 2.0400 -0.7213 1.2492 18 1 3.1263 -0.6444 1.2951 19 6 1.6351 -2.1955 1.1879 20 7 1.4558 -0.1037 2.4424 21 6 2.0912 -0.1938 3.6276 22 8 3.1468 -0.7859 3.7062 23 6 1.4906 0.4419 4.8548 24 6 2.4049 0.1948 6.0564 25 6 1.8046 0.8311 7.2836 26 6 2.0324 2.1376 7.7282 27 7 1.3351 2.3254 8.8192 28 7 0.6477 1.1397 9.1089 29 1 0.0557 0.9930 9.8631 30 6 0.9500 0.2396 8.1500 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 2.9173 -1.1205 -1.0288 35 1 1.0870 0.6164 -2.5525 36 1 2.7588 1.0462 -2.1182 37 1 2.5051 1.0621 -4.8008 38 1 3.1313 1.8431 -7.9849 39 1 1.9989 -2.7095 2.0776 40 1 0.5489 -2.2724 1.1420 41 1 2.0698 -2.6550 0.3001 42 1 0.6118 0.3701 2.3795 43 1 0.5107 0.0054 5.0475 44 1 1.3852 1.5148 4.6935 45 1 3.3847 0.6317 5.8635 46 1 2.5108 -0.8780 6.2178 47 1 2.6699 2.8669 7.2506 48 1 0.5764 -0.7717 8.0855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717429653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:40 Heat of formation + Delta-G solvation = -34.897284 kcal Electronic energy + Delta-G solvation = -27861.594066 eV Core-core repulsion = 23758.608345 eV Total energy + Delta-G solvation = -4102.985721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.06157 -40.96577 -40.14223 -38.53177 -36.04105 -35.26788 -34.86455 -33.26511 -32.30461 -32.02228 -30.28722 -29.63964 -28.11425 -26.16670 -25.67580 -24.21160 -22.87695 -21.43993 -21.10862 -20.79744 -20.63032 -19.91261 -18.72984 -18.23689 -17.54562 -17.23713 -16.71219 -16.53722 -16.38839 -16.07098 -15.64272 -15.53416 -15.32636 -15.27464 -14.86592 -14.55098 -14.44076 -14.23202 -13.73449 -13.53594 -13.47850 -13.39005 -13.24115 -13.08935 -13.01857 -12.90737 -12.80807 -12.48038 -12.41388 -12.11607 -11.99216 -11.88151 -11.62068 -11.48845 -11.43921 -10.82211 -10.56807 -10.33482 -10.03586 -10.00223 -9.38825 -9.34244 -8.45428 -5.94085 1.02845 1.40770 1.42675 1.53416 1.76259 1.81765 2.06923 2.11876 2.23373 2.33279 3.00496 3.21965 3.51288 3.68204 3.82449 3.97369 4.03402 4.11416 4.23471 4.31929 4.32921 4.38551 4.48062 4.51805 4.60831 4.66287 4.69808 4.76893 4.83082 4.87838 4.90098 4.96184 5.06469 5.07069 5.32310 5.33441 5.40266 5.41943 5.54243 5.57878 5.74857 5.90407 6.11198 6.35664 6.49675 6.61428 6.65860 6.76284 7.13920 7.37815 7.57730 8.13256 8.71625 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033687 B = 0.001500 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.981256 B =18664.544119 C =18879.008339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.081 3.919 3 H 0.057 0.943 4 N -0.669 5.669 5 C 0.066 3.934 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.336 4.336 10 H 0.078 0.922 11 C -0.011 4.011 12 N -0.919 5.919 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.270 1.270 16 H -0.273 1.273 17 C 0.149 3.851 18 H 0.063 0.937 19 C -0.149 4.149 20 N -0.712 5.712 21 C 0.508 3.492 22 O -0.587 6.587 23 C -0.123 4.123 24 C -0.018 4.018 25 C -0.250 4.250 26 C 0.046 3.954 27 N -0.337 5.337 28 N -0.474 5.474 29 H 0.451 0.549 30 C 0.072 3.928 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.342 0.658 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.415 0.585 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.194 0.806 48 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.901 3.167 29.759 31.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 H 0.075 0.925 4 N -0.302 5.302 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.210 5.210 9 C -0.465 4.465 10 H 0.096 0.904 11 C -0.211 4.211 12 N -0.560 5.560 13 Si 0.816 3.184 14 H -0.197 1.197 15 H -0.195 1.195 16 H -0.198 1.198 17 C 0.043 3.957 18 H 0.081 0.919 19 C -0.207 4.207 20 N -0.367 5.367 21 C 0.297 3.703 22 O -0.467 6.467 23 C -0.163 4.163 24 C -0.057 4.057 25 C -0.262 4.262 26 C -0.140 4.140 27 N -0.160 5.160 28 N -0.184 5.184 29 H 0.297 0.703 30 C -0.076 4.076 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.162 0.838 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.253 0.747 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.211 0.789 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.898 2.710 30.457 32.140 hybrid contribution 0.809 0.123 -1.191 1.445 sum -9.089 2.833 29.266 30.775 Atomic orbital electron populations 1.21890 0.92789 1.02856 1.02396 1.21777 0.97609 0.95859 0.87640 0.92485 1.60234 1.34558 1.32118 1.03311 1.21579 1.02384 0.93596 0.89040 1.20886 0.83209 0.87992 0.85430 1.90498 1.56597 1.18241 1.85579 1.41916 1.58302 1.12567 1.08230 1.19638 1.42271 0.95982 0.88649 0.90361 1.26010 0.97197 0.96602 1.01297 1.69660 1.48545 1.09649 1.28165 0.85007 0.78686 0.77856 0.76898 1.19738 1.19458 1.19802 1.20784 0.97522 0.93186 0.84206 0.91910 1.22016 1.02483 0.95003 1.01207 1.46070 1.26437 1.56781 1.07367 1.21437 0.84197 0.79125 0.85558 1.90712 1.24761 1.44903 1.86290 1.21691 1.01179 1.03100 0.90287 1.19446 0.97207 1.00182 0.88872 1.20172 1.07921 0.95547 1.02525 1.24193 0.98618 0.97513 0.93627 1.77297 1.13373 1.06164 1.19126 1.46379 1.39035 1.08986 1.23964 0.70346 1.22965 0.97700 0.97460 0.89480 0.89761 0.92581 0.91998 0.83837 0.87488 0.91764 0.76963 0.91311 0.93718 0.90989 0.92192 0.74655 0.86583 0.87135 0.91934 0.91344 0.78944 0.77454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.93 71.98 0.64 -1.73 16 2 C 0.08 1.70 2.66 44.91 0.12 1.82 16 3 H 0.06 1.12 7.80 -2.38 -0.02 1.10 16 4 N -0.67 -20.02 5.14 -495.57 -2.55 -22.57 16 5 C 0.07 2.19 5.97 85.56 0.51 2.70 16 6 C 0.44 20.63 7.82 87.66 0.69 21.32 16 7 O -0.62 -34.44 15.78 -3.08 -0.05 -34.49 16 8 N -0.57 -29.27 5.29 -306.98 -1.62 -30.89 16 9 C -0.34 -19.11 9.68 84.04 0.81 -18.30 16 10 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 11 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 12 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 13 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 C 0.15 3.13 2.30 44.99 0.10 3.23 16 18 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 19 C -0.15 -3.40 9.02 71.98 0.65 -2.75 16 20 N -0.71 -10.64 4.99 -442.53 -2.21 -12.85 16 21 C 0.51 8.98 7.79 87.66 0.68 9.66 16 22 O -0.59 -16.13 15.64 -3.04 -0.05 -16.18 16 23 C -0.12 -1.17 5.68 29.85 0.17 -1.00 16 24 C -0.02 -0.22 4.99 29.85 0.15 -0.07 16 25 C -0.25 -2.85 5.35 -20.14 -0.11 -2.96 16 26 C 0.05 0.64 11.96 85.24 1.02 1.66 16 27 N -0.34 -5.43 12.70 -57.02 -0.72 -6.15 16 28 N -0.47 -4.53 7.36 -57.59 -0.42 -4.95 16 29 H 0.45 1.55 8.96 -213.33 -1.91 -0.36 16 30 C 0.07 0.56 11.90 83.54 0.99 1.56 16 31 H 0.08 0.81 6.29 -2.38 -0.01 0.79 16 32 H 0.06 1.02 7.45 -2.39 -0.02 1.01 16 33 H 0.06 1.16 6.56 -2.39 -0.02 1.15 16 34 H 0.34 11.31 7.61 -89.69 -0.68 10.63 16 35 H 0.11 3.14 7.44 -2.39 -0.02 3.12 16 36 H 0.06 1.89 8.05 -2.39 -0.02 1.87 16 37 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 38 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 39 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.44 6.56 -2.39 -0.02 1.42 16 41 H 0.06 1.63 7.17 -2.39 -0.02 1.61 16 42 H 0.41 3.56 6.58 -92.71 -0.61 2.95 16 43 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.97 8.10 -2.38 -0.02 0.95 16 46 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 47 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 48 H 0.21 0.11 8.06 -2.91 -0.02 0.09 16 Total: -1.00 -78.67 398.54 -1.32 -79.98 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -2.91 Total: 37.23 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.90 Total: 15.01 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -7.24 Total: -126.54 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.10 Total: -50.67 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -78.67 -1.32 -79.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717429653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.087 kcal (2) G-P(sol) polarization free energy of solvation -78.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds