Wall clock time and date at job start Tue Mar 31 2020 19:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 5 5 C 1.34777 * 120.00199 * 275.00460 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 C 1.52996 * 109.47159 * 179.72352 * 7 5 4 9 9 C 1.50697 * 109.47491 * 179.97438 * 8 7 5 10 10 C 1.39872 * 126.03475 * 269.69523 * 9 8 7 11 11 N 1.30840 * 108.19733 * 179.81464 * 10 9 8 12 12 N 1.40083 * 108.20541 * 0.43481 * 11 10 9 13 13 H 0.97010 * 126.03698 * 179.70239 * 12 11 10 14 14 C 1.34950 * 107.92629 * 359.71997 * 12 11 10 15 15 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 16 16 H 1.09007 * 109.46426 * 300.00013 * 15 2 1 17 17 C 1.52997 * 109.47284 * 180.02562 * 15 2 1 18 18 N 1.46902 * 109.47278 * 59.99377 * 15 2 1 19 19 C 1.46903 * 110.99714 * 205.00011 * 18 15 2 20 20 C 1.50697 * 109.46633 * 180.02562 * 19 18 15 21 21 O 1.21292 * 120.00205 * 359.97438 * 20 19 18 22 22 N 1.34775 * 120.00111 * 180.02562 * 20 19 18 23 23 C 1.37100 * 120.00492 * 179.97438 * 22 20 19 24 24 H 1.08001 * 119.99603 * 0.02562 * 23 22 20 25 25 C 1.38952 * 120.00073 * 180.02562 * 23 22 20 26 26 N 1.31414 * 119.99735 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 120.00140 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46991 * 89.99889 * 27 25 23 29 29 H 1.48496 * 109.46888 * 210.00375 * 27 25 23 30 30 H 1.48499 * 109.46926 * 329.99844 * 27 25 23 31 31 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 32 32 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 33 33 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 34 34 H 0.97000 * 119.99484 * 94.99557 * 4 2 1 35 35 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 36 36 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 37 37 H 1.09004 * 109.47066 * 299.99797 * 8 7 5 38 38 H 1.09000 * 109.47234 * 59.99288 * 8 7 5 39 39 H 1.07993 * 125.90476 * 359.97438 * 10 9 8 40 40 H 1.07997 * 126.12680 * 180.02562 * 14 12 11 41 41 H 1.08993 * 109.47268 * 299.99524 * 17 15 2 42 42 H 1.09007 * 109.46797 * 59.99463 * 17 15 2 43 43 H 1.09002 * 109.47048 * 179.97438 * 17 15 2 44 44 H 1.00892 * 110.99843 * 328.95903 * 18 15 2 45 45 H 1.08999 * 109.47473 * 300.00258 * 19 18 15 46 46 H 1.08998 * 109.46899 * 60.01028 * 19 18 15 47 47 H 0.97000 * 120.00179 * 0.02562 * 22 20 19 48 48 H 0.97001 * 119.99767 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6553 -0.7271 3.5861 8 6 2.7119 0.2573 4.7559 9 6 3.2196 -0.4517 5.9850 10 6 2.4351 -1.1064 6.9402 11 7 3.2312 -1.6010 7.8532 12 7 4.5484 -1.2674 7.5127 13 1 5.3445 -1.5016 8.0150 14 6 4.5142 -0.5624 6.3624 15 6 2.0400 -0.7211 -1.2493 16 1 1.6766 -1.7488 -1.2492 17 6 3.5700 -0.7217 -1.2489 18 7 1.5502 -0.0287 -2.4487 19 6 1.4876 -0.9438 -3.5961 20 6 0.9826 -0.1994 -4.8052 21 8 0.7021 0.9775 -4.7194 22 7 0.8417 -0.8416 -5.9817 23 6 0.3818 -0.1646 -7.0816 24 1 0.1329 0.8836 -7.0053 25 6 0.2361 -0.8269 -8.2944 26 7 -0.2042 -0.1777 -9.3488 27 14 0.6675 -2.6396 -8.4264 28 1 -0.5331 -3.4577 -8.1189 29 1 1.1308 -2.9390 -9.8051 30 1 1.7477 -2.9630 -7.4601 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6317 1.1526 35 1 1.9840 -1.5491 3.8351 36 1 3.6536 -1.1193 3.3925 37 1 3.3832 1.0792 4.5069 38 1 1.7135 0.6495 4.9494 39 1 1.3587 -1.1915 6.9252 40 1 5.3674 -0.1593 5.8372 41 1 3.9337 0.3058 -1.2487 42 1 3.9329 -1.2358 -0.3589 43 1 3.9333 -1.2359 -2.1388 44 1 0.6527 0.3993 -2.2779 45 1 2.4830 -1.3375 -3.8018 46 1 0.8111 -1.7673 -3.3675 47 1 1.0650 -1.7831 -6.0502 48 1 -0.3063 -0.6402 -10.1953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717429654.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:44 Heat of formation + Delta-G solvation = -1.428306 kcal Electronic energy + Delta-G solvation = -27922.142577 eV Core-core repulsion = 23820.608180 eV Total energy + Delta-G solvation = -4101.534397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62849 -40.15736 -38.64193 -37.41717 -34.56619 -34.29773 -33.85012 -31.79129 -31.68606 -31.05187 -29.97208 -29.24863 -26.59820 -25.00313 -24.11954 -22.98478 -22.40618 -20.67362 -20.56297 -20.18752 -19.41411 -18.43011 -18.26570 -17.30465 -16.52326 -16.06811 -15.81794 -15.51760 -15.10975 -14.91492 -14.87646 -14.48538 -14.16505 -14.06292 -13.85097 -13.60924 -13.40846 -13.19990 -13.02998 -12.82966 -12.59731 -12.43884 -12.41766 -12.13496 -12.01814 -11.73252 -11.58785 -11.50189 -11.40612 -11.17281 -10.96544 -10.68160 -10.60622 -10.12176 -10.04345 -9.97861 -9.58023 -9.28002 -8.93958 -8.59346 -8.22719 -8.16868 -6.31507 -3.82996 1.43367 2.29077 2.45047 2.46690 2.93858 3.01497 3.05396 3.14097 3.73148 4.08331 4.12038 4.29530 4.43742 4.45498 4.58159 4.71241 4.74722 4.83888 4.92933 5.07227 5.07835 5.15530 5.20727 5.27353 5.31600 5.39597 5.43737 5.56006 5.59466 5.66153 5.79491 5.81196 5.83258 5.87129 5.89763 5.93025 6.09621 6.18702 6.25229 6.29719 6.78741 7.06316 7.18509 7.28296 7.53990 7.57806 8.04430 8.14150 8.59161 8.94589 9.41835 9.81976 10.81625 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033630 B = 0.001556 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.380465 B =17987.036979 C =18311.338111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 H 0.100 0.900 4 N -0.724 5.724 5 C 0.512 3.488 6 O -0.537 6.537 7 C -0.134 4.134 8 C -0.025 4.025 9 C -0.236 4.236 10 C 0.056 3.944 11 N -0.298 5.298 12 N -0.479 5.479 13 H 0.439 0.561 14 C 0.061 3.939 15 C 0.078 3.922 16 H 0.046 0.954 17 C -0.139 4.139 18 N -0.661 5.661 19 C 0.049 3.951 20 C 0.449 3.551 21 O -0.563 6.563 22 N -0.590 5.590 23 C -0.305 4.305 24 H 0.120 0.880 25 C 0.042 3.958 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.269 1.269 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.398 0.602 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.183 0.817 40 H 0.177 0.823 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.353 0.647 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.888 -8.631 30.831 33.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.035 3.965 3 H 0.118 0.882 4 N -0.376 5.376 5 C 0.298 3.702 6 O -0.414 6.414 7 C -0.174 4.174 8 C -0.064 4.064 9 C -0.247 4.247 10 C -0.131 4.131 11 N -0.120 5.120 12 N -0.187 5.187 13 H 0.283 0.717 14 C -0.087 4.087 15 C -0.033 4.033 16 H 0.064 0.936 17 C -0.197 4.197 18 N -0.297 5.297 19 C -0.084 4.084 20 C 0.235 3.765 21 O -0.445 6.445 22 N -0.230 5.230 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.161 4.161 26 N -0.521 5.521 27 Si 0.706 3.294 28 H -0.197 1.197 29 H -0.202 1.202 30 H -0.195 1.195 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.232 0.768 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.200 0.800 40 H 0.194 0.806 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.176 0.824 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.087 -7.366 31.592 33.972 hybrid contribution 0.065 -2.263 -0.773 2.392 sum 10.152 -9.630 30.819 33.847 Atomic orbital electron populations 1.22259 0.95268 1.02117 1.03223 1.21056 0.93906 0.98294 0.83223 0.88243 1.46053 1.67827 1.13943 1.09769 1.20752 0.77465 0.87422 0.84512 1.90732 1.49703 1.16013 1.84918 1.21695 1.03010 0.99907 0.92825 1.19588 1.02554 0.95788 0.88502 1.20166 0.92201 1.10578 1.01772 1.23895 1.00283 0.96696 0.92225 1.77353 0.87315 1.23567 1.23752 1.46331 1.08006 1.44045 1.20335 0.71729 1.22468 0.99368 0.97324 0.89541 1.21739 0.96514 0.95793 0.89261 0.93643 1.21803 0.94168 1.02839 1.00917 1.60156 1.35515 1.31749 1.02293 1.21755 1.01359 0.93956 0.91316 1.19690 0.84566 0.88227 0.84011 1.90575 1.53712 1.15832 1.84370 1.42200 1.60134 1.11062 1.09595 1.19443 1.40072 0.98034 0.85858 0.86253 1.25037 0.97486 0.98388 0.95220 1.69625 1.45133 1.36501 1.00836 0.86671 0.78959 0.85171 0.78575 1.19685 1.20171 1.19496 0.91615 0.90863 0.92597 0.76785 0.88935 0.89074 0.90515 0.90267 0.79975 0.80629 0.91662 0.92899 0.92430 0.82380 0.89436 0.93718 0.79724 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.25 37.16 0.34 -1.44 16 2 C 0.14 1.45 2.29 -67.93 -0.16 1.30 16 3 H 0.10 1.30 7.58 -51.93 -0.39 0.91 16 4 N -0.72 -5.63 4.38 -53.81 -0.24 -5.87 16 5 C 0.51 4.58 7.79 -10.98 -0.09 4.50 16 6 O -0.54 -7.12 15.64 5.55 0.09 -7.04 16 7 C -0.13 -0.74 5.68 -27.88 -0.16 -0.90 16 8 C -0.03 -0.16 4.99 -27.89 -0.14 -0.30 16 9 C -0.24 -1.47 5.35 -105.06 -0.56 -2.03 16 10 C 0.06 0.39 11.96 -17.36 -0.21 0.18 16 11 N -0.30 -2.45 12.70 30.62 0.39 -2.07 16 12 N -0.48 -2.61 7.36 30.44 0.22 -2.38 16 13 H 0.44 1.07 8.96 -182.60 -1.64 -0.57 16 14 C 0.06 0.30 11.90 -17.22 -0.21 0.09 16 15 C 0.08 0.83 2.28 -67.71 -0.15 0.68 16 16 H 0.05 0.43 7.80 -51.93 -0.40 0.03 16 17 C -0.14 -1.40 9.26 37.16 0.34 -1.06 16 18 N -0.66 -9.82 5.93 -107.99 -0.64 -10.47 16 19 C 0.05 0.78 5.97 -4.98 -0.03 0.75 16 20 C 0.45 10.06 7.82 -10.99 -0.09 9.98 16 21 O -0.56 -15.05 15.78 5.55 0.09 -14.96 16 22 N -0.59 -13.90 5.09 -10.96 -0.06 -13.96 16 23 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 24 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 25 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 26 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 27 Si 0.88 19.16 27.74 -169.99 -4.71 14.44 16 28 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 29 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 30 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.84 6.21 -51.93 -0.32 0.52 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.40 2.04 8.39 -40.82 -0.34 1.70 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 38 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 39 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.18 0.34 8.06 -52.49 -0.42 -0.09 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.40 7.44 -51.93 -0.39 0.02 16 43 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 44 H 0.35 5.51 5.87 -39.30 -0.23 5.28 16 45 H 0.09 1.26 7.44 -51.93 -0.39 0.87 16 46 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 47 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -36.90 399.19 -7.91 -44.81 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -8.50 Total: 12.31 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.34 Total: 4.04 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.45 Total: -59.62 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: 0.17 Total: -22.00 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.90 -7.91 -44.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717429654.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.386 kcal (2) G-P(sol) polarization free energy of solvation -36.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds