Wall clock time and date at job start Tue Mar 31 2020 20:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47477 * 2 1 4 4 C 1.35852 * 126.13584 * 269.97822 * 3 2 1 5 5 N 1.30172 * 109.00101 * 179.76070 * 4 3 2 6 6 C 1.35761 * 108.86994 * 0.41251 * 5 4 3 7 7 C 1.47318 * 126.23594 * 179.85687 * 6 5 4 8 8 O 1.21633 * 119.99968 * 173.61689 * 7 6 5 9 9 N 1.34777 * 120.00239 * 353.34534 * 7 6 5 10 10 C 1.46495 * 119.99885 * 354.75510 * 9 7 6 11 11 C 1.46500 * 120.00116 * 174.76223 * 9 7 6 12 12 C 1.52999 * 109.47197 * 89.99400 * 11 9 7 13 13 C 1.52999 * 109.47074 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.47237 * 180.02562 * 13 12 11 15 15 C 1.46904 * 111.00109 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46812 * 179.97438 * 15 14 13 17 17 O 1.21288 * 120.00274 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99471 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99862 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99712 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00092 * 180.02562 * 19 18 16 22 22 N 1.31421 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00152 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46979 * 59.99935 * 23 21 19 25 25 H 1.48498 * 109.47166 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46798 * 299.99975 * 23 21 19 27 27 C 1.35379 * 126.13360 * 89.99419 * 3 2 1 28 28 H 1.08998 * 109.46981 * 300.00018 * 1 2 3 29 29 H 1.09001 * 109.47387 * 59.99622 * 1 2 3 30 30 H 1.08997 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46981 * 239.99982 * 2 1 3 32 32 H 1.08997 * 109.46898 * 120.00307 * 2 1 3 33 33 H 1.07994 * 125.49773 * 0.02562 * 4 3 2 34 34 H 1.09000 * 109.47067 * 85.32079 * 10 9 7 35 35 H 1.08998 * 109.47705 * 205.32371 * 10 9 7 36 36 H 1.09004 * 109.47231 * 325.32721 * 10 9 7 37 37 H 1.08997 * 109.46686 * 209.99548 * 11 9 7 38 38 H 1.09004 * 109.47065 * 329.99520 * 11 9 7 39 39 H 1.08991 * 109.47323 * 300.00116 * 12 11 9 40 40 H 1.09004 * 109.47014 * 60.00090 * 12 11 9 41 41 H 1.09005 * 109.47355 * 300.00256 * 13 12 11 42 42 H 1.09004 * 109.46860 * 60.00322 * 13 12 11 43 43 H 1.00896 * 110.99749 * 56.04764 * 14 13 12 44 44 H 1.09000 * 109.47043 * 300.00512 * 15 14 13 45 45 H 1.09003 * 109.46646 * 60.00387 * 15 14 13 46 46 H 0.96999 * 120.00436 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99966 * 179.97438 * 22 21 19 48 48 H 1.07997 * 126.56835 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2859 2.1363 -1.0972 5 7 2.6956 3.3108 -0.7137 6 6 2.7143 3.3479 0.6433 7 6 3.1187 4.4926 1.4777 8 8 2.9824 4.4432 2.6854 9 7 3.6449 5.5926 0.9035 10 6 3.9213 5.6068 -0.5351 11 6 3.9405 6.7739 1.7179 12 6 5.3713 6.6804 2.2516 13 6 5.6803 7.9144 3.1017 14 7 7.0543 7.8250 3.6136 15 6 7.3866 8.9954 4.4368 16 6 8.8002 8.8681 4.9435 17 8 9.4654 7.8980 4.6476 18 7 9.3251 9.8322 5.7255 19 6 10.6112 9.7166 6.1861 20 1 11.2038 8.8532 5.9219 21 6 11.1522 10.7103 6.9927 22 7 10.4312 11.7611 7.3137 23 14 12.9048 10.5532 7.6197 24 1 13.8381 10.4791 6.4670 25 1 13.2405 11.7359 8.4525 26 1 13.0292 9.3199 8.4374 27 6 2.2844 2.1338 1.0934 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1724 1.8155 -2.1221 34 1 3.0183 5.8901 -1.0758 35 1 4.7121 6.3267 -0.7461 36 1 4.2392 4.6140 -0.8538 37 1 3.8384 7.6709 1.1073 38 1 3.2432 6.8223 2.5543 39 1 5.4735 5.7833 2.8622 40 1 6.0687 6.6319 1.4152 41 1 5.5782 8.8114 2.4907 42 1 4.9830 7.9633 3.9381 43 1 7.7147 7.7139 2.8590 44 1 7.2958 9.9001 3.8355 45 1 6.7014 9.0510 5.2827 46 1 8.7930 10.6078 5.9624 47 1 10.8088 12.4546 7.8771 48 1 2.1776 1.8310 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723175051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:00 Heat of formation + Delta-G solvation = -2.763707 kcal Electronic energy + Delta-G solvation = -27593.659137 eV Core-core repulsion = 23492.066832 eV Total energy + Delta-G solvation = -4101.592305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.61740 -39.62216 -38.21575 -36.40618 -35.63884 -35.15655 -33.80208 -31.86161 -31.12256 -30.82615 -29.93461 -27.50785 -26.53642 -25.28795 -24.35901 -23.53916 -22.40398 -21.45521 -21.24622 -19.52207 -19.11802 -17.84011 -17.80151 -16.62986 -16.43500 -16.17733 -15.83676 -15.55685 -15.21266 -15.07958 -14.60620 -14.40962 -14.28069 -14.18548 -14.12529 -13.65863 -13.52918 -13.28683 -13.19371 -12.95146 -12.80495 -12.65920 -12.31302 -12.06346 -11.90099 -11.75221 -11.57493 -11.41187 -11.24310 -10.96815 -10.61058 -10.51694 -10.39394 -10.21517 -10.15468 -9.99286 -9.43793 -9.06127 -8.65894 -8.36591 -7.94456 -7.88018 -6.35470 -3.76136 1.27891 2.06661 2.14092 2.94811 3.24946 3.29866 3.34735 3.35794 3.93938 3.98827 4.01854 4.18283 4.22193 4.29072 4.45224 4.49737 4.63329 4.88075 4.93310 4.97085 5.10534 5.14156 5.19538 5.27496 5.32473 5.33961 5.38972 5.51859 5.58775 5.62125 5.64659 5.78869 5.83986 5.89636 6.07761 6.08878 6.22028 6.28884 6.37513 6.51282 6.62371 7.24885 7.35622 7.43619 7.60957 7.79431 8.12950 8.13268 8.68554 9.24283 9.61433 10.13503 10.82342 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028720 B = 0.001453 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.679569 B =19268.206616 C =19623.101265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.181 3.819 5 N -0.459 5.459 6 C -0.060 4.060 7 C 0.600 3.400 8 O -0.541 6.541 9 N -0.604 5.604 10 C 0.089 3.911 11 C 0.119 3.881 12 C -0.131 4.131 13 C 0.064 3.936 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.442 3.558 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.036 3.964 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.209 0.791 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.348 0.652 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.606 -19.691 -19.982 36.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.139 5.139 4 C -0.102 4.102 5 N -0.179 5.179 6 C -0.189 4.189 7 C 0.388 3.612 8 O -0.418 6.418 9 N -0.335 5.335 10 C -0.054 4.054 11 C -0.004 4.004 12 C -0.170 4.170 13 C -0.067 4.067 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.227 3.773 17 O -0.467 6.467 18 N -0.202 5.202 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.103 4.103 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.226 0.774 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.167 0.833 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.159 -20.034 -19.407 36.253 hybrid contribution 0.383 0.501 0.173 0.654 sum -22.776 -19.534 -19.234 35.640 Atomic orbital electron populations 1.22181 0.93693 1.03524 1.03520 1.21984 0.95926 0.79279 1.05252 1.45553 1.48301 1.13185 1.06845 1.25266 1.03609 0.87697 0.93645 1.70825 1.17896 1.18795 1.10334 1.20543 1.12244 0.95572 0.90515 1.16972 0.76983 0.81136 0.86148 1.90822 1.56334 1.81023 1.13583 1.47611 1.62241 1.13949 1.09742 1.21946 1.00532 1.03835 0.79081 1.21468 0.97015 0.86431 0.95461 1.21890 0.95683 0.99799 0.99630 1.21862 0.91388 0.95743 0.97660 1.60023 1.02607 1.40780 1.26774 1.21669 0.96932 0.91562 0.98000 1.19849 0.88250 0.85048 0.84147 1.90518 1.62252 1.32243 1.61693 1.41857 1.14005 1.20210 1.44091 1.19665 0.89197 1.06781 1.27256 0.88006 1.25251 1.00122 0.95248 0.97317 1.69613 1.37565 1.09706 1.37558 0.85915 0.81916 0.77586 0.78775 1.19964 1.21005 1.19906 1.22609 1.02571 0.91824 0.93306 0.91598 0.91624 0.90220 0.88341 0.88568 0.77407 0.92627 0.92042 0.89287 0.90527 0.89786 0.90321 0.91988 0.95634 0.90934 0.83302 0.93942 0.89589 0.77451 0.91884 0.79604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.27 10.24 37.16 0.38 0.11 16 2 C 0.10 0.17 6.84 -4.04 -0.03 0.15 16 3 N -0.46 -2.54 2.73 -118.37 -0.32 -2.87 16 4 C 0.18 1.11 12.55 -89.90 -1.13 -0.02 16 5 N -0.46 -4.35 8.05 -11.03 -0.09 -4.44 16 6 C -0.06 -0.67 6.58 -83.09 -0.55 -1.22 16 7 C 0.60 8.13 7.65 -12.57 -0.10 8.03 16 8 O -0.54 -8.90 16.53 5.25 0.09 -8.81 16 9 N -0.60 -7.12 2.87 -182.89 -0.53 -7.65 16 10 C 0.09 0.83 9.30 59.84 0.56 1.39 16 11 C 0.12 1.34 5.34 -4.04 -0.02 1.32 16 12 C -0.13 -1.69 5.80 -26.73 -0.16 -1.85 16 13 C 0.06 0.88 5.69 -3.82 -0.02 0.85 16 14 N -0.67 -11.96 6.12 -115.05 -0.70 -12.66 16 15 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 16 C 0.44 10.99 7.82 -10.98 -0.09 10.91 16 17 O -0.58 -16.63 15.78 5.55 0.09 -16.54 16 18 N -0.56 -14.90 5.29 -10.96 -0.06 -14.96 16 19 C -0.30 -8.63 9.68 -14.93 -0.14 -8.77 16 20 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 21 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 22 N -0.90 -25.15 13.05 55.50 0.72 -24.43 16 23 Si 0.93 21.59 29.55 -169.99 -5.02 16.57 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.04 0.31 11.27 -16.64 -0.19 0.12 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.21 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 36 H 0.09 0.89 5.86 -51.93 -0.30 0.58 16 37 H 0.08 0.69 8.07 -51.93 -0.42 0.28 16 38 H 0.08 1.03 7.50 -51.93 -0.39 0.64 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.35 6.31 8.43 -39.29 -0.33 5.98 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 46 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 47 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 406.79 15.07 6.13 6.13 Total: -1.00 -37.10 406.79 -8.91 -46.02 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.61 Total: 11.16 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: -1.61 Total: 12.48 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -0.98 Total: -67.00 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: 0.17 Total: -25.36 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.10 -8.91 -46.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723175051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.254 kcal (2) G-P(sol) polarization free energy of solvation -37.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds