Wall clock time and date at job start Tue Mar 31 2020 20:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47477 * 2 1 4 4 C 1.35852 * 126.13584 * 269.97822 * 3 2 1 5 5 N 1.30172 * 109.00101 * 179.76070 * 4 3 2 6 6 C 1.35761 * 108.86994 * 0.41251 * 5 4 3 7 7 C 1.47318 * 126.23594 * 179.85687 * 6 5 4 8 8 O 1.21633 * 119.99968 * 173.61689 * 7 6 5 9 9 N 1.34777 * 120.00239 * 353.34534 * 7 6 5 10 10 C 1.46495 * 119.99885 * 354.75510 * 9 7 6 11 11 C 1.46500 * 120.00116 * 174.76223 * 9 7 6 12 12 C 1.52999 * 109.47197 * 89.99400 * 11 9 7 13 13 C 1.52999 * 109.47074 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.47237 * 180.02562 * 13 12 11 15 15 C 1.46904 * 111.00109 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46812 * 179.97438 * 15 14 13 17 17 O 1.21288 * 120.00274 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99471 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99862 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99712 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00092 * 180.02562 * 19 18 16 22 22 N 1.31421 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00152 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46979 * 59.99935 * 23 21 19 25 25 H 1.48498 * 109.47166 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46798 * 299.99975 * 23 21 19 27 27 C 1.35379 * 126.13360 * 89.99419 * 3 2 1 28 28 H 1.08998 * 109.46981 * 300.00018 * 1 2 3 29 29 H 1.09001 * 109.47387 * 59.99622 * 1 2 3 30 30 H 1.08997 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46981 * 239.99982 * 2 1 3 32 32 H 1.08997 * 109.46898 * 120.00307 * 2 1 3 33 33 H 1.07994 * 125.49773 * 0.02562 * 4 3 2 34 34 H 1.09000 * 109.47067 * 85.32079 * 10 9 7 35 35 H 1.08998 * 109.47705 * 205.32371 * 10 9 7 36 36 H 1.09004 * 109.47231 * 325.32721 * 10 9 7 37 37 H 1.08997 * 109.46686 * 209.99548 * 11 9 7 38 38 H 1.09004 * 109.47065 * 329.99520 * 11 9 7 39 39 H 1.08991 * 109.47323 * 300.00116 * 12 11 9 40 40 H 1.09004 * 109.47014 * 60.00090 * 12 11 9 41 41 H 1.09005 * 109.47355 * 300.00256 * 13 12 11 42 42 H 1.09004 * 109.46860 * 60.00322 * 13 12 11 43 43 H 1.00896 * 110.99749 * 56.04764 * 14 13 12 44 44 H 1.09000 * 109.47043 * 300.00512 * 15 14 13 45 45 H 1.09003 * 109.46646 * 60.00387 * 15 14 13 46 46 H 0.96999 * 120.00436 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99966 * 179.97438 * 22 21 19 48 48 H 1.07997 * 126.56835 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2859 2.1363 -1.0972 5 7 2.6956 3.3108 -0.7137 6 6 2.7143 3.3479 0.6433 7 6 3.1187 4.4926 1.4777 8 8 2.9824 4.4432 2.6854 9 7 3.6449 5.5926 0.9035 10 6 3.9213 5.6068 -0.5351 11 6 3.9405 6.7739 1.7179 12 6 5.3713 6.6804 2.2516 13 6 5.6803 7.9144 3.1017 14 7 7.0543 7.8250 3.6136 15 6 7.3866 8.9954 4.4368 16 6 8.8002 8.8681 4.9435 17 8 9.4654 7.8980 4.6476 18 7 9.3251 9.8322 5.7255 19 6 10.6112 9.7166 6.1861 20 1 11.2038 8.8532 5.9219 21 6 11.1522 10.7103 6.9927 22 7 10.4312 11.7611 7.3137 23 14 12.9048 10.5532 7.6197 24 1 13.8381 10.4791 6.4670 25 1 13.2405 11.7359 8.4525 26 1 13.0292 9.3199 8.4374 27 6 2.2844 2.1338 1.0934 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1724 1.8155 -2.1221 34 1 3.0183 5.8901 -1.0758 35 1 4.7121 6.3267 -0.7461 36 1 4.2392 4.6140 -0.8538 37 1 3.8384 7.6709 1.1073 38 1 3.2432 6.8223 2.5543 39 1 5.4735 5.7833 2.8622 40 1 6.0687 6.6319 1.4152 41 1 5.5782 8.8114 2.4907 42 1 4.9830 7.9633 3.9381 43 1 7.7147 7.7139 2.8590 44 1 7.2958 9.9001 3.8355 45 1 6.7014 9.0510 5.2827 46 1 8.7930 10.6078 5.9624 47 1 10.8088 12.4546 7.8771 48 1 2.1776 1.8310 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723175051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:59 Heat of formation + Delta-G solvation = -28.821219 kcal Electronic energy + Delta-G solvation = -27594.789075 eV Core-core repulsion = 23492.066832 eV Total energy + Delta-G solvation = -4102.722243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.17701 -40.57214 -40.14932 -37.61979 -36.51360 -35.96778 -35.76181 -33.33624 -32.86115 -31.26811 -30.60034 -28.81907 -27.55437 -26.68467 -25.33668 -24.44708 -23.29944 -22.41138 -21.81386 -21.07018 -20.27365 -19.90081 -18.44530 -17.89320 -17.45865 -17.18752 -16.93100 -16.70869 -16.49171 -16.09790 -15.77998 -15.64758 -15.40956 -15.12286 -14.96338 -14.82827 -14.63842 -14.50054 -14.13693 -13.88379 -13.57823 -13.53907 -13.31696 -13.20934 -12.99607 -12.93663 -12.81332 -12.70104 -12.44937 -12.41761 -12.19330 -12.11683 -11.67849 -11.50716 -11.32111 -10.88134 -10.66449 -10.36745 -10.02226 -9.83213 -9.47075 -9.31382 -8.46585 -5.95855 0.55943 1.40039 1.41584 1.46834 1.53003 1.70109 2.04352 2.12991 2.29902 2.50884 2.94960 3.20325 3.38985 3.53558 3.74803 3.89802 3.94937 4.09369 4.11065 4.17153 4.27822 4.36769 4.41479 4.42322 4.47485 4.49025 4.55034 4.58558 4.65056 4.70591 4.75315 4.84572 4.88869 5.07018 5.13299 5.17356 5.23130 5.25108 5.40328 5.45920 5.65115 5.89545 6.11130 6.13514 6.40143 6.41745 6.59986 6.80720 7.11906 7.20148 7.55270 8.10931 8.70600 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028720 B = 0.001453 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.679569 B =19268.206616 C =19623.101265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.193 3.807 5 N -0.484 5.484 6 C -0.096 4.096 7 C 0.589 3.411 8 O -0.586 6.586 9 N -0.605 5.605 10 C 0.093 3.907 11 C 0.122 3.878 12 C -0.119 4.119 13 C 0.068 3.932 14 N -0.690 5.690 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.571 5.571 19 C -0.338 4.338 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.995 3.005 24 H -0.271 1.271 25 H -0.268 1.268 26 H -0.273 1.273 27 C 0.036 3.964 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.251 0.749 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.344 0.656 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.356 -20.023 -21.708 38.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.027 4.027 3 N -0.130 5.130 4 C -0.090 4.090 5 N -0.204 5.204 6 C -0.224 4.224 7 C 0.378 3.622 8 O -0.467 6.467 9 N -0.335 5.335 10 C -0.049 4.049 11 C -0.001 4.001 12 C -0.158 4.158 13 C -0.061 4.061 14 N -0.323 5.323 15 C -0.067 4.067 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.209 5.209 19 C -0.468 4.468 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.818 3.182 24 H -0.196 1.196 25 H -0.193 1.193 26 H -0.198 1.198 27 C -0.105 4.105 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.122 0.878 33 H 0.266 0.734 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.163 0.837 44 H 0.089 0.911 45 H 0.120 0.880 46 H 0.231 0.769 47 H 0.088 0.912 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -23.946 -20.353 -21.165 37.889 hybrid contribution 0.544 0.510 0.636 0.980 sum -23.402 -19.843 -20.530 36.917 Atomic orbital electron populations 1.22156 0.93459 1.04397 1.02505 1.22328 0.96012 0.77286 1.07119 1.45791 1.47189 1.14249 1.05743 1.26077 1.01143 0.86674 0.95152 1.70744 1.19460 1.20809 1.09357 1.20401 1.14798 0.95764 0.91439 1.17463 0.76592 0.82099 0.86003 1.90774 1.58421 1.82036 1.15422 1.47760 1.61459 1.13619 1.10712 1.22005 1.01272 1.04039 0.77576 1.21462 0.95361 0.87540 0.95721 1.21746 0.97006 0.97936 0.99082 1.21896 0.88948 0.97087 0.98176 1.60011 1.04421 1.40662 1.27199 1.21532 0.92809 0.93234 0.99076 1.20905 0.90238 0.83726 0.82801 1.90483 1.64059 1.33743 1.62902 1.41917 1.13560 1.20825 1.44573 1.19657 0.90582 1.07083 1.29450 0.90397 1.26054 1.03973 0.94469 0.96640 1.69673 1.39038 1.09938 1.37371 0.84972 0.76972 0.77977 0.78295 1.19598 1.19285 1.19847 1.22706 1.01848 0.91637 0.94348 0.93424 0.91789 0.88399 0.85456 0.87801 0.73365 0.91979 0.90493 0.89834 0.87425 0.91116 0.93865 0.91396 0.92790 0.90827 0.83735 0.91072 0.88029 0.76898 0.91232 0.79325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.22 10.24 71.98 0.74 0.52 16 2 C 0.09 0.11 6.84 86.38 0.59 0.70 16 3 N -0.45 -4.31 2.73 -528.40 -1.44 -5.75 16 4 C 0.19 1.97 12.55 180.10 2.26 4.23 16 5 N -0.48 -8.82 8.05 -188.82 -1.52 -10.34 16 6 C -0.10 -2.20 6.58 40.50 0.27 -1.94 16 7 C 0.59 16.77 7.65 86.63 0.66 17.44 16 8 O -0.59 -20.67 16.53 -4.14 -0.07 -20.74 16 9 N -0.61 -14.39 2.87 -850.78 -2.44 -16.83 16 10 C 0.09 1.67 9.30 127.77 1.19 2.86 16 11 C 0.12 2.70 5.34 86.38 0.46 3.16 16 12 C -0.12 -3.05 5.80 30.59 0.18 -2.87 16 13 C 0.07 1.79 5.69 86.30 0.49 2.28 16 14 N -0.69 -24.30 6.12 -517.90 -3.17 -27.47 16 15 C 0.07 2.43 6.17 85.56 0.53 2.96 16 16 C 0.44 21.95 7.82 87.66 0.69 22.63 16 17 O -0.63 -36.64 15.78 -3.06 -0.05 -36.69 16 18 N -0.57 -30.56 5.29 -306.98 -1.62 -32.18 16 19 C -0.34 -19.88 9.68 84.04 0.81 -19.06 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 21 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 22 N -0.92 -50.66 13.05 21.66 0.28 -50.38 16 23 Si 0.99 43.95 29.55 68.60 2.03 45.97 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 27 C 0.04 0.62 11.27 83.72 0.94 1.57 16 28 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.25 0.14 8.06 -2.91 -0.02 0.11 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.12 8.04 -2.39 -0.02 1.10 16 36 H 0.08 1.63 5.86 -2.38 -0.01 1.62 16 37 H 0.11 1.71 8.07 -2.39 -0.02 1.69 16 38 H 0.07 1.77 7.50 -2.38 -0.02 1.75 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.34 12.45 8.43 -89.70 -0.76 11.69 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 46 H 0.40 20.05 7.90 -92.71 -0.73 19.32 16 47 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 48 H 0.19 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -83.65 406.79 1.76 -81.89 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -0.51 Total: 38.20 kcal Atomic # 6 Polarization: 24.03 SS G_CDS: 10.27 Total: 34.31 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -9.92 Total: -142.95 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: -0.12 Total: -57.43 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -83.65 1.76 -81.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723175051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.073 kcal (2) G-P(sol) polarization free energy of solvation -83.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds