Wall clock time and date at job start Tue Mar 31 2020 19:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46493 * 109.47177 * 120.00339 * 2 1 3 5 5 C 1.36936 * 120.00076 * 274.99567 * 4 2 1 6 6 H 1.08002 * 120.00300 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99914 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00446 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99795 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46977 * 60.00505 * 9 7 5 11 11 H 1.48499 * 109.47043 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47202 * 300.00473 * 9 7 5 13 13 C 1.52997 * 109.46921 * 240.00379 * 2 1 3 14 14 H 1.09000 * 109.47140 * 175.00145 * 13 2 1 15 15 C 1.53006 * 109.47164 * 295.00093 * 13 2 1 16 16 N 1.46500 * 109.47204 * 55.00018 * 13 2 1 17 17 C 1.34779 * 119.99741 * 155.00342 * 16 13 2 18 18 O 1.21279 * 120.00369 * 359.97438 * 17 16 13 19 19 C 1.50708 * 119.99762 * 179.97438 * 17 16 13 20 20 N 1.46498 * 109.47033 * 179.97438 * 19 17 16 21 21 N 1.40322 * 126.32167 * 269.69171 * 20 19 17 22 22 C 1.28871 * 108.11466 * 180.08155 * 21 20 19 23 23 N 1.38008 * 108.81578 * 1.12595 * 22 21 20 24 24 C 1.34298 * 108.33562 * 358.31276 * 23 22 21 25 25 O 1.21816 * 126.32515 * 181.53414 * 24 23 22 26 26 C 1.46720 * 124.16072 * 177.45504 * 23 22 21 27 27 C 1.53283 * 108.65475 * 19.60485 * 26 23 22 28 28 C 1.53235 * 109.36899 * 308.14525 * 27 26 23 29 29 C 1.51111 * 127.46688 * 181.73669 * 22 21 20 30 30 H 1.08998 * 109.47141 * 59.99120 * 1 2 3 31 31 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46964 * 299.99798 * 1 2 3 33 33 H 0.97008 * 120.00184 * 94.99888 * 4 2 1 34 34 H 0.96996 * 120.00180 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46801 * 180.02562 * 15 13 2 36 36 H 1.09001 * 109.46998 * 299.99705 * 15 13 2 37 37 H 1.09000 * 109.47050 * 59.99996 * 15 13 2 38 38 H 0.96997 * 120.00110 * 334.99611 * 16 13 2 39 39 H 1.08994 * 109.47136 * 300.00021 * 19 17 16 40 40 H 1.09002 * 109.46457 * 59.99935 * 19 17 16 41 41 H 1.09001 * 109.61035 * 139.35558 * 26 23 22 42 42 H 1.08998 * 109.60914 * 259.68711 * 26 23 22 43 43 H 1.09004 * 109.49206 * 68.11363 * 27 26 23 44 44 H 1.09006 * 109.49282 * 188.17539 * 27 26 23 45 45 H 1.08997 * 109.54499 * 190.53762 * 28 27 26 46 46 H 1.09000 * 109.54142 * 310.80338 * 28 27 26 47 47 H 1.09003 * 109.74936 * 78.00929 * 29 22 21 48 48 H 1.09001 * 109.79278 * 317.29913 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4244 7 6 2.6114 -0.6622 3.5091 8 7 2.9244 -1.9392 3.4500 9 14 2.7893 0.2695 5.1185 10 1 1.4668 0.8062 5.5285 11 1 3.2984 -0.6489 6.1685 12 1 3.7446 1.3919 4.9377 13 6 2.0400 -0.7212 -1.2493 14 1 3.1263 -0.6443 -1.2952 15 6 1.6351 -2.1954 -1.1881 16 7 1.4558 -0.1035 -2.4424 17 6 2.0912 -0.1936 -3.6276 18 8 3.1467 -0.7857 -3.7063 19 6 1.4900 0.4413 -4.8550 20 7 2.3654 0.2049 -6.0056 21 7 3.4126 1.0332 -6.4373 22 6 3.9470 0.4938 -7.4786 23 7 3.2669 -0.6697 -7.7758 24 6 2.3099 -0.8478 -6.8505 25 8 1.5349 -1.7853 -6.7851 26 6 3.5622 -1.5244 -8.9311 27 6 4.9796 -1.2111 -9.4233 28 6 5.1211 0.2997 -9.6369 29 6 5.1300 0.9996 -8.2711 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6319 1.1525 34 1 3.2477 -2.3965 4.2420 35 1 1.9989 -2.7093 -2.0779 36 1 2.0698 -2.6550 -0.3004 37 1 0.5488 -2.2723 -1.1422 38 1 0.6117 0.3703 -2.3794 39 1 0.5103 0.0040 -5.0475 40 1 1.3837 1.5141 -4.6940 41 1 3.5006 -2.5720 -8.6365 42 1 2.8439 -1.3254 -9.7265 43 1 5.7044 -1.5426 -8.6797 44 1 5.1609 -1.7299 -10.3646 45 1 6.0544 0.5083 -10.1597 46 1 4.2811 0.6646 -10.2281 47 1 6.0544 0.7651 -7.7432 48 1 5.0481 2.0777 -8.4091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725114367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:06 Heat of formation + Delta-G solvation = -7.920385 kcal Electronic energy + Delta-G solvation = -29497.578922 eV Core-core repulsion = 25395.763007 eV Total energy + Delta-G solvation = -4101.815915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.65649 -41.05269 -38.89255 -38.50430 -37.73796 -35.64758 -34.52890 -33.77474 -33.39403 -31.26087 -29.90297 -29.80494 -28.82040 -26.19210 -25.62810 -24.69924 -23.64963 -22.98086 -21.70721 -20.74554 -20.67931 -19.51597 -18.75926 -18.43324 -17.62608 -17.30295 -17.00222 -16.65174 -16.54762 -16.09941 -15.89234 -15.60742 -15.41769 -15.20219 -15.16212 -14.93032 -14.59916 -14.29240 -14.01751 -13.98369 -13.64117 -13.30737 -13.15604 -13.11815 -13.00519 -12.92168 -12.78360 -12.64891 -12.19512 -12.08247 -12.05098 -11.88642 -11.85296 -11.68303 -11.63830 -11.47618 -11.34870 -10.95303 -10.78199 -10.19557 -9.66194 -9.04690 -7.94080 -5.23455 0.58544 0.93482 1.46575 1.46937 1.48060 1.50636 1.56459 1.92501 2.18074 2.57834 3.21120 3.39388 3.55451 3.62043 3.75203 3.84225 3.86313 3.93194 3.96900 4.04509 4.10207 4.27931 4.33237 4.38376 4.45187 4.54790 4.57288 4.65167 4.78407 4.83688 4.87531 4.89065 4.94003 4.96644 5.01938 5.06466 5.16077 5.17826 5.23518 5.34954 5.44005 5.52658 5.59733 5.62728 6.27444 6.44976 6.54364 6.86426 7.14679 7.33771 8.07975 8.30881 9.29386 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.002103 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.338459 B =13310.457073 C =13592.294978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 H 0.051 0.949 4 N -0.735 5.735 5 C -0.238 4.238 6 H 0.080 0.920 7 C -0.078 4.078 8 N -0.971 5.971 9 Si 0.975 3.025 10 H -0.275 1.275 11 H -0.299 1.299 12 H -0.279 1.279 13 C 0.152 3.848 14 H 0.052 0.948 15 C -0.149 4.149 16 N -0.698 5.698 17 C 0.492 3.508 18 O -0.581 6.581 19 C 0.143 3.857 20 N -0.446 5.446 21 N -0.300 5.300 22 C 0.285 3.715 23 N -0.554 5.554 24 C 0.637 3.363 25 O -0.597 6.597 26 C 0.118 3.882 27 C -0.131 4.131 28 C -0.116 4.116 29 C -0.041 4.041 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.040 0.960 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.418 0.582 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.081 0.919 47 H 0.112 0.888 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 8.875 -32.926 34.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.069 0.931 4 N -0.378 5.378 5 C -0.370 4.370 6 H 0.097 0.903 7 C -0.270 4.270 8 N -0.622 5.622 9 Si 0.804 3.196 10 H -0.201 1.201 11 H -0.225 1.225 12 H -0.205 1.205 13 C 0.046 3.954 14 H 0.071 0.929 15 C -0.207 4.207 16 N -0.353 5.353 17 C 0.278 3.722 18 O -0.460 6.460 19 C 0.018 3.982 20 N -0.264 5.264 21 N -0.122 5.122 22 C 0.007 3.993 23 N -0.282 5.282 24 C 0.336 3.664 25 O -0.475 6.475 26 C -0.002 4.002 27 C -0.169 4.169 28 C -0.154 4.154 29 C -0.081 4.081 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.258 0.742 39 H 0.163 0.837 40 H 0.181 0.819 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.099 0.901 47 H 0.130 0.870 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.688 8.713 -32.114 33.282 hybrid contribution -0.250 -1.019 1.294 1.666 sum 0.438 7.695 -30.820 31.769 Atomic orbital electron populations 1.22370 0.96320 1.01635 1.01500 1.20532 0.94058 0.94897 0.84705 0.93092 1.42673 1.78701 1.10502 1.05899 1.19592 1.35068 0.94337 0.87996 0.90253 1.25588 1.02926 0.96909 1.01625 1.69818 1.52545 1.10308 1.29515 0.85195 0.78029 0.77195 0.79229 1.20112 1.22508 1.20530 1.20871 0.97171 0.92913 0.84416 0.92928 1.22018 1.02438 0.95647 1.00612 1.45879 1.26253 1.56384 1.06819 1.21565 0.84843 0.79935 0.85869 1.90710 1.24784 1.44442 1.86037 1.21493 0.92029 1.05634 0.79000 1.48483 1.31080 1.20038 1.26798 1.76760 1.03044 1.18648 1.13765 1.25336 0.96522 0.84333 0.93117 1.46317 1.30533 1.24685 1.26712 1.16832 0.83613 0.83886 0.82051 1.91021 1.45007 1.34013 1.77419 1.22190 1.00332 0.93451 0.84233 1.22035 0.92554 0.98474 1.03832 1.21755 1.05753 0.93163 0.94734 1.20886 0.89821 1.03099 0.94262 0.90051 0.93181 0.93622 0.79120 0.94108 0.94041 0.92874 0.90583 0.74205 0.83706 0.81929 0.90531 0.88397 0.91216 0.85998 0.86405 0.90073 0.86964 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.01 71.98 0.65 -4.33 16 2 C 0.17 6.42 2.93 44.99 0.13 6.55 16 3 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 4 N -0.74 -37.08 5.03 -322.95 -1.63 -38.70 16 5 C -0.24 -13.16 9.93 84.03 0.83 -12.33 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 8 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 9 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 C 0.15 5.51 2.62 44.99 0.12 5.63 16 14 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 15 C -0.15 -5.50 9.00 71.98 0.65 -4.86 16 16 N -0.70 -19.12 4.99 -442.52 -2.21 -21.33 16 17 C 0.49 15.22 7.86 87.66 0.69 15.91 16 18 O -0.58 -24.44 16.09 -3.03 -0.05 -24.49 16 19 C 0.14 3.20 6.87 85.64 0.59 3.79 16 20 N -0.45 -12.54 3.12 -482.00 -1.50 -14.05 16 21 N -0.30 -7.57 12.51 -49.12 -0.61 -8.18 16 22 C 0.29 5.46 7.73 137.75 1.06 6.52 16 23 N -0.55 -12.33 3.13 -644.30 -2.02 -14.35 16 24 C 0.64 19.79 8.64 179.11 1.55 21.33 16 25 O -0.60 -22.50 17.83 -4.72 -0.08 -22.59 16 26 C 0.12 1.59 6.87 86.43 0.59 2.18 16 27 C -0.13 -0.69 5.94 30.77 0.18 -0.51 16 28 C -0.12 -0.25 5.96 30.83 0.18 -0.07 16 29 C -0.04 -0.30 6.32 30.14 0.19 -0.11 16 30 H 0.08 1.76 6.29 -2.39 -0.02 1.74 16 31 H 0.05 1.62 6.57 -2.39 -0.02 1.61 16 32 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.37 20.50 5.77 -92.70 -0.54 19.96 16 34 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 2.22 6.29 -2.39 -0.02 2.20 16 37 H 0.08 2.49 6.57 -2.39 -0.02 2.47 16 38 H 0.42 7.99 6.58 -92.71 -0.61 7.38 16 39 H 0.15 2.59 8.12 -2.39 -0.02 2.57 16 40 H 0.16 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.53 8.10 -2.38 -0.02 0.51 16 44 H 0.12 -0.01 8.14 -2.38 -0.02 -0.03 16 45 H 0.12 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.08 0.13 8.11 -2.39 -0.02 0.11 16 47 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 48 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -89.65 389.28 1.95 -87.70 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.15 Total: 31.94 kcal Atomic # 6 Polarization: 27.76 SS G_CDS: 7.89 Total: 35.64 kcal Atomic # 7 Polarization: -149.03 SS G_CDS: -7.69 Total: -156.72 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -0.13 Total: -47.08 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -89.65 1.95 -87.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725114367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.783 kcal (2) G-P(sol) polarization free energy of solvation -89.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds