Wall clock time and date at job start Tue Mar 31 2020 19:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 5 5 C 1.36936 * 119.99928 * 85.00237 * 4 2 1 6 6 H 1.07993 * 120.00240 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99737 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00292 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99784 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47218 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47201 * 120.00260 * 9 7 5 12 12 H 1.48500 * 109.47146 * 240.00125 * 9 7 5 13 13 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 14 14 H 1.09000 * 109.46738 * 184.99930 * 13 2 1 15 15 C 1.53002 * 109.47069 * 65.00288 * 13 2 1 16 16 N 1.46496 * 109.47535 * 304.99861 * 13 2 1 17 17 C 1.34782 * 120.00190 * 205.00315 * 16 13 2 18 18 O 1.21275 * 119.99645 * 359.97438 * 17 16 13 19 19 C 1.50699 * 119.99889 * 180.02562 * 17 16 13 20 20 N 1.46506 * 109.46850 * 180.02562 * 19 17 16 21 21 N 1.40313 * 126.32032 * 269.68539 * 20 19 17 22 22 C 1.28872 * 108.11494 * 180.08396 * 21 20 19 23 23 N 1.38008 * 108.81729 * 1.11907 * 22 21 20 24 24 C 1.34305 * 108.33305 * 358.32263 * 23 22 21 25 25 O 1.21812 * 126.32385 * 181.52769 * 24 23 22 26 26 C 1.46723 * 124.16126 * 177.45404 * 23 22 21 27 27 C 1.53282 * 108.65165 * 19.61031 * 26 23 22 28 28 C 1.53229 * 109.37009 * 308.14384 * 27 26 23 29 29 C 1.51115 * 127.46439 * 181.74142 * 22 21 20 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 0.97003 * 119.99991 * 264.99646 * 4 2 1 34 34 H 0.97001 * 120.00319 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47199 * 59.99565 * 15 13 2 36 36 H 1.09001 * 109.46743 * 179.97438 * 15 13 2 37 37 H 1.09000 * 109.47048 * 299.99452 * 15 13 2 38 38 H 0.97000 * 119.99828 * 24.99960 * 16 13 2 39 39 H 1.09003 * 109.46742 * 299.99231 * 19 17 16 40 40 H 1.08992 * 109.47265 * 59.99769 * 19 17 16 41 41 H 1.09000 * 109.60463 * 139.36211 * 26 23 22 42 42 H 1.09006 * 109.60912 * 259.69430 * 26 23 22 43 43 H 1.08997 * 109.48863 * 68.11505 * 27 26 23 44 44 H 1.09004 * 109.48906 * 188.17893 * 27 26 23 45 45 H 1.09003 * 109.54321 * 190.53500 * 28 27 26 46 46 H 1.08998 * 109.54776 * 310.80326 * 28 27 26 47 47 H 1.08997 * 109.75370 * 78.00723 * 29 22 21 48 48 H 1.09003 * 109.79236 * 317.28908 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8928 1.0404 -2.4241 7 6 2.6124 -0.6618 -3.5089 8 7 2.9253 -1.9388 -3.4498 9 14 2.7915 0.2702 -5.1179 10 1 2.3764 1.6823 -4.9208 11 1 4.2086 0.2273 -5.5598 12 1 1.9312 -0.3582 -6.1524 13 6 2.0399 -0.7212 1.2493 14 1 3.1263 -0.6443 1.2952 15 6 1.6352 -2.1955 1.1880 16 7 1.4558 -0.1036 2.4424 17 6 2.0912 -0.1937 3.6276 18 8 3.1463 -0.7865 3.7064 19 6 1.4900 0.4411 4.8550 20 7 2.3655 0.2048 6.0056 21 7 2.3040 -0.8855 6.8867 22 6 3.2333 -0.7415 7.7679 23 7 3.9065 0.4367 7.5165 24 6 3.3774 0.9993 6.4177 25 8 3.7425 2.0348 5.8902 26 6 4.9963 0.9568 8.3498 27 6 5.5672 -0.1947 9.1851 28 6 4.4250 -0.9051 9.9190 29 6 3.5810 -1.6813 8.8990 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 3.2486 -2.3962 -4.2418 35 1 2.0698 -2.6549 0.3003 36 1 1.9988 -2.7093 2.0778 37 1 0.5488 -2.2723 1.1421 38 1 0.6118 0.3702 2.3794 39 1 1.3838 1.5140 4.6941 40 1 0.5104 0.0038 5.0475 41 1 5.7786 1.3697 7.7129 42 1 4.6129 1.7354 9.0094 43 1 6.0743 -0.9027 8.5297 44 1 6.2765 0.2004 9.9124 45 1 4.8379 -1.5973 10.6528 46 1 3.8006 -0.1673 10.4228 47 1 4.1530 -2.5255 8.5140 48 1 2.6682 -2.0410 9.3739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725114369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:12 Heat of formation + Delta-G solvation = 20.246376 kcal Electronic energy + Delta-G solvation = -29495.849401 eV Core-core repulsion = 25395.254888 eV Total energy + Delta-G solvation = -4100.594513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.74702 -39.73108 -37.93795 -37.12436 -36.74757 -33.90680 -33.77231 -32.79960 -31.78095 -29.76585 -29.07034 -28.19536 -27.85229 -24.90593 -24.33210 -23.18601 -23.01129 -21.92714 -20.44837 -20.11482 -19.22492 -17.77772 -17.55935 -17.25413 -16.66001 -16.26349 -16.01752 -15.35885 -15.01089 -14.84224 -14.75215 -14.65325 -14.57639 -14.20780 -13.87075 -13.74738 -13.41069 -13.18750 -12.85753 -12.67248 -12.38401 -12.19384 -12.15525 -11.87726 -11.65623 -11.61944 -11.53604 -11.48775 -11.28542 -10.93957 -10.82841 -10.54265 -10.42025 -10.33095 -10.22962 -9.95449 -9.75924 -9.57970 -8.94068 -8.80687 -8.63034 -6.99473 -5.77586 -3.06995 1.48365 1.75203 2.55612 2.68241 2.75482 3.35924 3.43873 3.49706 3.51566 3.87294 4.06680 4.15791 4.25325 4.54698 4.59111 4.75289 4.76422 4.84172 4.93515 4.97311 5.13540 5.18189 5.23375 5.30411 5.36889 5.42358 5.49283 5.59881 5.64151 5.66143 5.69874 5.84305 5.92682 6.08246 6.16509 6.30699 6.32875 6.41464 6.47928 6.64051 6.73472 6.92691 7.08885 7.47189 7.63926 7.70325 7.92818 8.34074 8.41086 9.52220 10.07649 10.42477 11.45099 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023802 B = 0.002103 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.092597 B =13311.540282 C =13457.983192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.720 5.720 5 C -0.239 4.239 6 H 0.072 0.928 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.292 1.292 13 C 0.138 3.862 14 H 0.087 0.913 15 C -0.158 4.158 16 N -0.716 5.716 17 C 0.494 3.506 18 O -0.527 6.527 19 C 0.143 3.857 20 N -0.437 5.437 21 N -0.268 5.268 22 C 0.276 3.724 23 N -0.556 5.556 24 C 0.657 3.343 25 O -0.552 6.552 26 C 0.131 3.869 27 C -0.138 4.138 28 C -0.124 4.124 29 C -0.040 4.040 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.398 0.602 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.728 2.044 31.713 31.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.363 5.363 5 C -0.370 4.370 6 H 0.090 0.910 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.033 3.967 14 H 0.105 0.895 15 C -0.216 4.216 16 N -0.370 5.370 17 C 0.277 3.723 18 O -0.402 6.402 19 C 0.017 3.983 20 N -0.257 5.257 21 N -0.089 5.089 22 C -0.003 4.003 23 N -0.286 5.286 24 C 0.357 3.643 25 O -0.426 6.426 26 C 0.009 3.991 27 C -0.176 4.176 28 C -0.162 4.162 29 C -0.079 4.079 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.222 0.778 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.234 0.766 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.121 0.879 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.470 1.952 30.817 30.914 hybrid contribution 0.282 0.838 -0.990 1.327 sum -1.188 2.790 29.828 29.982 Atomic orbital electron populations 1.22533 0.99245 1.01267 0.99770 1.20368 0.92221 0.95626 0.86103 0.93004 1.42462 1.78217 1.10788 1.04831 1.19273 1.36684 0.93970 0.87101 0.91048 1.24752 1.02002 0.96018 0.98144 1.69666 1.50782 1.08666 1.28859 0.86108 0.77327 0.78777 0.83907 1.20552 1.21857 1.21890 1.21337 0.99013 0.92872 0.83482 0.89539 1.22128 1.01498 0.95758 1.02237 1.46164 1.25804 1.56834 1.08156 1.20823 0.85627 0.80948 0.84874 1.90730 1.22161 1.42117 1.85227 1.21242 0.92868 1.03187 0.80993 1.48239 1.31578 1.19794 1.26075 1.76735 1.21040 1.08857 1.02297 1.24246 0.90130 0.88450 0.97472 1.46023 1.34445 1.21466 1.26619 1.16441 0.81741 0.84751 0.81402 1.91089 1.66724 1.23229 1.61510 1.21783 0.87642 0.96762 0.92877 1.21990 0.98532 0.97548 0.99503 1.21720 0.96871 1.00110 0.97494 1.20497 1.02217 0.95056 0.90162 0.92358 0.92781 0.94822 0.77787 0.93499 0.90521 0.93190 0.92457 0.76567 0.85860 0.85802 0.88994 0.90042 0.90274 0.88866 0.89392 0.90725 0.87860 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.01 37.16 0.33 -2.48 16 2 C 0.17 3.29 2.93 -67.93 -0.20 3.09 16 3 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 4 N -0.72 -17.93 5.03 -53.43 -0.27 -18.20 16 5 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 9 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 C 0.14 2.47 2.62 -67.93 -0.18 2.29 16 14 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 15 C -0.16 -2.77 9.00 37.16 0.33 -2.43 16 16 N -0.72 -10.23 4.99 -53.81 -0.27 -10.50 16 17 C 0.49 7.71 7.86 -10.98 -0.09 7.63 16 18 O -0.53 -10.74 16.09 5.56 0.09 -10.66 16 19 C 0.14 1.69 6.87 -5.19 -0.04 1.66 16 20 N -0.44 -6.22 3.12 -66.40 -0.21 -6.42 16 21 N -0.27 -3.43 12.51 33.12 0.41 -3.01 16 22 C 0.28 2.78 7.73 -153.76 -1.19 1.59 16 23 N -0.56 -6.30 3.13 -117.56 -0.37 -6.67 16 24 C 0.66 10.12 8.64 -87.06 -0.75 9.37 16 25 O -0.55 -10.22 17.82 5.09 0.09 -10.13 16 26 C 0.13 0.95 6.88 -3.77 -0.03 0.92 16 27 C -0.14 -0.54 5.94 -26.47 -0.16 -0.69 16 28 C -0.12 -0.35 5.96 -26.37 -0.16 -0.51 16 29 C -0.04 -0.19 6.32 -27.44 -0.17 -0.37 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.91 6.56 -51.93 -0.34 0.57 16 32 H 0.03 0.43 6.29 -51.93 -0.33 0.10 16 33 H 0.39 10.18 5.77 -40.82 -0.24 9.94 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.08 1.50 6.29 -51.93 -0.33 1.17 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.91 6.56 -51.93 -0.34 0.57 16 38 H 0.40 4.41 6.58 -40.82 -0.27 4.14 16 39 H 0.12 1.23 8.12 -51.93 -0.42 0.81 16 40 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 44 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 45 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 46 H 0.07 0.20 8.11 -51.93 -0.42 -0.22 16 47 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -39.08 389.28 -8.75 -47.83 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.27 Total: 9.04 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: -2.53 Total: 12.82 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: 0.03 Total: -72.32 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.18 Total: -20.78 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.08 -8.75 -47.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725114369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.075 kcal (2) G-P(sol) polarization free energy of solvation -39.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds