Wall clock time and date at job start Tue Mar 31 2020 19:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 5 5 C 1.36936 * 119.99928 * 85.00237 * 4 2 1 6 6 H 1.07993 * 120.00240 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99737 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00292 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99784 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47218 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47201 * 120.00260 * 9 7 5 12 12 H 1.48500 * 109.47146 * 240.00125 * 9 7 5 13 13 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 14 14 H 1.09000 * 109.46738 * 184.99930 * 13 2 1 15 15 C 1.53002 * 109.47069 * 65.00288 * 13 2 1 16 16 N 1.46496 * 109.47535 * 304.99861 * 13 2 1 17 17 C 1.34782 * 120.00190 * 205.00315 * 16 13 2 18 18 O 1.21275 * 119.99645 * 359.97438 * 17 16 13 19 19 C 1.50699 * 119.99889 * 180.02562 * 17 16 13 20 20 N 1.46506 * 109.46850 * 180.02562 * 19 17 16 21 21 N 1.40313 * 126.32032 * 269.68539 * 20 19 17 22 22 C 1.28872 * 108.11494 * 180.08396 * 21 20 19 23 23 N 1.38008 * 108.81729 * 1.11907 * 22 21 20 24 24 C 1.34305 * 108.33305 * 358.32263 * 23 22 21 25 25 O 1.21812 * 126.32385 * 181.52769 * 24 23 22 26 26 C 1.46723 * 124.16126 * 177.45404 * 23 22 21 27 27 C 1.53282 * 108.65165 * 19.61031 * 26 23 22 28 28 C 1.53229 * 109.37009 * 308.14384 * 27 26 23 29 29 C 1.51115 * 127.46439 * 181.74142 * 22 21 20 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 0.97003 * 119.99991 * 264.99646 * 4 2 1 34 34 H 0.97001 * 120.00319 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47199 * 59.99565 * 15 13 2 36 36 H 1.09001 * 109.46743 * 179.97438 * 15 13 2 37 37 H 1.09000 * 109.47048 * 299.99452 * 15 13 2 38 38 H 0.97000 * 119.99828 * 24.99960 * 16 13 2 39 39 H 1.09003 * 109.46742 * 299.99231 * 19 17 16 40 40 H 1.08992 * 109.47265 * 59.99769 * 19 17 16 41 41 H 1.09000 * 109.60463 * 139.36211 * 26 23 22 42 42 H 1.09006 * 109.60912 * 259.69430 * 26 23 22 43 43 H 1.08997 * 109.48863 * 68.11505 * 27 26 23 44 44 H 1.09004 * 109.48906 * 188.17893 * 27 26 23 45 45 H 1.09003 * 109.54321 * 190.53500 * 28 27 26 46 46 H 1.08998 * 109.54776 * 310.80326 * 28 27 26 47 47 H 1.08997 * 109.75370 * 78.00723 * 29 22 21 48 48 H 1.09003 * 109.79236 * 317.28908 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8928 1.0404 -2.4241 7 6 2.6124 -0.6618 -3.5089 8 7 2.9253 -1.9388 -3.4498 9 14 2.7915 0.2702 -5.1179 10 1 2.3764 1.6823 -4.9208 11 1 4.2086 0.2273 -5.5598 12 1 1.9312 -0.3582 -6.1524 13 6 2.0399 -0.7212 1.2493 14 1 3.1263 -0.6443 1.2952 15 6 1.6352 -2.1955 1.1880 16 7 1.4558 -0.1036 2.4424 17 6 2.0912 -0.1937 3.6276 18 8 3.1463 -0.7865 3.7064 19 6 1.4900 0.4411 4.8550 20 7 2.3655 0.2048 6.0056 21 7 2.3040 -0.8855 6.8867 22 6 3.2333 -0.7415 7.7679 23 7 3.9065 0.4367 7.5165 24 6 3.3774 0.9993 6.4177 25 8 3.7425 2.0348 5.8902 26 6 4.9963 0.9568 8.3498 27 6 5.5672 -0.1947 9.1851 28 6 4.4250 -0.9051 9.9190 29 6 3.5810 -1.6813 8.8990 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 3.2486 -2.3962 -4.2418 35 1 2.0698 -2.6549 0.3003 36 1 1.9988 -2.7093 2.0778 37 1 0.5488 -2.2723 1.1421 38 1 0.6118 0.3702 2.3794 39 1 1.3838 1.5140 4.6941 40 1 0.5104 0.0038 5.0475 41 1 5.7786 1.3697 7.7129 42 1 4.6129 1.7354 9.0094 43 1 6.0743 -0.9027 8.5297 44 1 6.2765 0.2004 9.9124 45 1 4.8379 -1.5973 10.6528 46 1 3.8006 -0.1673 10.4228 47 1 4.1530 -2.5255 8.5140 48 1 2.6682 -2.0410 9.3739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725114369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:11 Heat of formation + Delta-G solvation = -8.254220 kcal Electronic energy + Delta-G solvation = -29497.085280 eV Core-core repulsion = 25395.254888 eV Total energy + Delta-G solvation = -4101.830391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.65609 -41.05275 -38.89740 -38.50887 -37.73946 -35.65647 -34.52836 -33.77778 -33.39793 -31.25664 -29.90544 -29.79703 -28.82112 -26.19703 -25.62965 -24.69591 -23.64701 -22.98912 -21.70712 -20.74640 -20.68308 -19.53067 -18.76025 -18.43063 -17.64573 -17.30159 -16.98311 -16.65198 -16.54456 -16.13915 -15.88376 -15.61574 -15.43737 -15.18587 -15.16371 -14.91820 -14.60695 -14.28126 -14.01823 -13.98409 -13.64980 -13.31631 -13.14298 -13.10648 -13.00146 -12.92108 -12.84457 -12.66955 -12.09930 -12.08398 -12.05421 -11.88575 -11.85179 -11.69539 -11.63860 -11.47599 -11.35429 -10.98913 -10.78266 -10.19211 -9.66201 -9.05559 -7.95899 -5.24873 0.58271 0.93607 1.45357 1.46989 1.47159 1.47752 1.56861 1.92723 2.18065 2.56252 3.21159 3.37914 3.55465 3.62157 3.75051 3.84054 3.86944 3.92592 3.96857 4.04951 4.10234 4.28748 4.32996 4.38307 4.45369 4.55016 4.58004 4.67021 4.78423 4.85368 4.87513 4.89259 4.94615 4.97309 5.02236 5.06434 5.17599 5.17990 5.24042 5.35084 5.44386 5.52036 5.59983 5.62953 6.26365 6.44990 6.54363 6.86253 7.14722 7.32679 8.06639 8.29849 9.27903 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023802 B = 0.002103 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.092597 B =13311.540282 C =13457.983192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.044 0.956 4 N -0.735 5.735 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.265 1.265 11 H -0.297 1.297 12 H -0.292 1.292 13 C 0.151 3.849 14 H 0.047 0.953 15 C -0.146 4.146 16 N -0.698 5.698 17 C 0.492 3.508 18 O -0.581 6.581 19 C 0.143 3.857 20 N -0.446 5.446 21 N -0.298 5.298 22 C 0.285 3.715 23 N -0.554 5.554 24 C 0.636 3.364 25 O -0.598 6.598 26 C 0.118 3.882 27 C -0.131 4.131 28 C -0.116 4.116 29 C -0.041 4.041 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.418 0.582 39 H 0.143 0.857 40 H 0.166 0.834 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.080 0.920 47 H 0.113 0.887 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 2.478 34.505 34.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.063 0.937 4 N -0.377 5.377 5 C -0.369 4.369 6 H 0.096 0.904 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.225 1.225 12 H -0.219 1.219 13 C 0.045 3.955 14 H 0.065 0.935 15 C -0.205 4.205 16 N -0.353 5.353 17 C 0.278 3.722 18 O -0.460 6.460 19 C 0.019 3.981 20 N -0.264 5.264 21 N -0.120 5.120 22 C 0.007 3.993 23 N -0.282 5.282 24 C 0.335 3.665 25 O -0.476 6.476 26 C -0.002 4.002 27 C -0.169 4.169 28 C -0.154 4.154 29 C -0.080 4.080 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.210 0.790 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.258 0.742 39 H 0.161 0.839 40 H 0.183 0.817 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.099 0.901 47 H 0.131 0.869 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.986 2.418 33.679 33.898 hybrid contribution 0.773 0.717 -1.716 2.014 sum -2.213 3.135 31.963 32.192 Atomic orbital electron populations 1.22352 0.96016 1.01845 1.01455 1.20546 0.94293 0.94689 0.84886 0.93747 1.42666 1.78705 1.10519 1.05827 1.19648 1.34897 0.94273 0.88043 0.90449 1.25566 1.02921 0.96945 1.01554 1.69824 1.52618 1.10235 1.29381 0.85076 0.76633 0.78243 0.79818 1.18945 1.22460 1.21930 1.20870 0.96927 0.93372 0.84309 0.93460 1.21997 1.02596 0.95028 1.00837 1.45880 1.26278 1.56398 1.06785 1.21561 0.84811 0.79950 0.85889 1.90709 1.24611 1.44588 1.86062 1.21492 0.93746 1.04237 0.78663 1.48481 1.31418 1.19978 1.26497 1.76746 1.23080 1.08875 1.03323 1.25350 0.88446 0.88055 0.97472 1.46314 1.34674 1.21532 1.25721 1.16856 0.82359 0.84807 0.82476 1.91026 1.68177 1.25205 1.63172 1.22190 0.86464 0.98849 0.92732 1.22032 0.99314 0.96147 0.99386 1.21756 0.96073 1.00507 0.97081 1.20887 1.03792 0.94379 0.88949 0.93742 0.92740 0.90079 0.79001 0.94068 0.93047 0.93412 0.90262 0.74209 0.83940 0.81703 0.90635 0.88421 0.91198 0.86043 0.86369 0.90093 0.86909 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.91 9.01 71.98 0.65 -4.26 16 2 C 0.16 6.43 2.93 44.99 0.13 6.56 16 3 H 0.04 1.80 8.08 -2.39 -0.02 1.78 16 4 N -0.73 -37.28 5.03 -322.94 -1.63 -38.90 16 5 C -0.24 -13.23 9.93 84.03 0.83 -12.40 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 8 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 9 Si 0.97 46.97 29.55 68.60 2.03 48.99 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 13 C 0.15 5.47 2.62 44.99 0.12 5.59 16 14 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 15 C -0.15 -5.16 9.00 71.98 0.65 -4.51 16 16 N -0.70 -19.12 4.99 -442.54 -2.21 -21.33 16 17 C 0.49 15.20 7.86 87.66 0.69 15.89 16 18 O -0.58 -24.42 16.09 -3.01 -0.05 -24.47 16 19 C 0.14 3.20 6.87 85.63 0.59 3.79 16 20 N -0.45 -12.52 3.12 -481.99 -1.50 -14.02 16 21 N -0.30 -7.38 12.51 -49.11 -0.61 -7.99 16 22 C 0.28 5.38 7.73 137.75 1.06 6.45 16 23 N -0.55 -12.42 3.13 -644.27 -2.02 -14.44 16 24 C 0.64 20.00 8.64 179.10 1.55 21.55 16 25 O -0.60 -23.07 17.82 -4.71 -0.08 -23.15 16 26 C 0.12 1.62 6.88 86.43 0.59 2.22 16 27 C -0.13 -0.70 5.94 30.77 0.18 -0.52 16 28 C -0.12 -0.23 5.96 30.83 0.18 -0.05 16 29 C -0.04 -0.28 6.32 30.14 0.19 -0.09 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.71 6.56 -2.39 -0.02 1.70 16 32 H 0.08 1.75 6.29 -2.39 -0.02 1.73 16 33 H 0.38 20.50 5.77 -92.71 -0.54 19.97 16 34 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.05 2.08 6.29 -2.39 -0.02 2.06 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 2.41 6.56 -2.39 -0.02 2.40 16 38 H 0.42 7.99 6.58 -92.71 -0.61 7.38 16 39 H 0.14 2.62 8.12 -2.39 -0.02 2.60 16 40 H 0.17 2.25 8.14 -2.39 -0.02 2.24 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.07 0.53 8.10 -2.39 -0.02 0.51 16 44 H 0.12 0.01 8.14 -2.38 -0.02 -0.01 16 45 H 0.12 -0.36 8.14 -2.39 -0.02 -0.37 16 46 H 0.08 0.13 8.11 -2.39 -0.02 0.11 16 47 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -90.44 389.28 1.95 -88.50 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.15 Total: 30.71 kcal Atomic # 6 Polarization: 28.28 SS G_CDS: 7.89 Total: 36.17 kcal Atomic # 7 Polarization: -149.06 SS G_CDS: -7.69 Total: -156.75 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -0.13 Total: -47.62 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -90.44 1.95 -88.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725114369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.242 kcal (2) G-P(sol) polarization free energy of solvation -90.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds