Wall clock time and date at job start Tue Mar 31 2020 19:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46908 * 2 1 4 4 N 1.46499 * 109.47042 * 120.00120 * 2 1 3 5 5 C 1.34774 * 119.99473 * 274.99639 * 4 2 1 6 6 O 1.21279 * 120.00716 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99715 * 180.02562 * 5 4 2 8 8 N 1.46497 * 109.47261 * 180.02562 * 7 5 4 9 9 N 1.40314 * 126.32180 * 269.69293 * 8 7 5 10 10 C 1.28874 * 108.11732 * 180.02562 * 9 8 7 11 11 N 1.38014 * 108.81599 * 1.11720 * 10 9 8 12 12 C 1.34299 * 108.32975 * 358.32055 * 11 10 9 13 13 O 1.21816 * 126.31958 * 181.52639 * 12 11 10 14 14 C 1.46720 * 124.15890 * 177.45392 * 11 10 9 15 15 C 1.53291 * 108.65611 * 19.61168 * 14 11 10 16 16 C 1.53228 * 109.36618 * 308.14059 * 15 14 11 17 17 C 1.51112 * 127.47026 * 181.73998 * 10 9 8 18 18 C 1.53004 * 109.46906 * 239.99777 * 2 1 3 19 19 H 1.09002 * 109.47194 * 300.00164 * 18 2 1 20 20 C 1.52995 * 109.46864 * 179.97438 * 18 2 1 21 21 N 1.46499 * 109.46824 * 59.99935 * 18 2 1 22 22 C 1.36935 * 119.99926 * 204.99960 * 21 18 2 23 23 H 1.08005 * 119.99877 * 359.97438 * 22 21 18 24 24 C 1.38811 * 120.00369 * 179.73019 * 22 21 18 25 25 N 1.31617 * 119.99773 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47154 * 89.99247 * 26 24 22 28 28 H 1.48496 * 109.47375 * 209.99772 * 26 24 22 29 29 H 1.48502 * 109.46736 * 329.99467 * 26 24 22 30 30 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46902 * 299.99810 * 1 2 3 32 32 H 1.08998 * 109.46903 * 60.00198 * 1 2 3 33 33 H 0.96996 * 119.99958 * 94.99865 * 4 2 1 34 34 H 1.09000 * 109.46827 * 300.00154 * 7 5 4 35 35 H 1.09002 * 109.46986 * 60.00156 * 7 5 4 36 36 H 1.09000 * 109.60364 * 139.36320 * 14 11 10 37 37 H 1.09006 * 109.60780 * 259.69289 * 14 11 10 38 38 H 1.08994 * 109.48532 * 68.10914 * 15 14 11 39 39 H 1.08999 * 109.48538 * 188.17416 * 15 14 11 40 40 H 1.08991 * 109.54394 * 190.53408 * 16 15 14 41 41 H 1.09002 * 109.54710 * 310.80806 * 16 15 14 42 42 H 1.09000 * 109.75478 * 78.00269 * 17 10 9 43 43 H 1.09002 * 109.78851 * 317.29284 * 17 10 9 44 44 H 1.09003 * 109.47025 * 179.97438 * 20 18 2 45 45 H 1.09002 * 109.47544 * 300.00188 * 20 18 2 46 46 H 1.09007 * 109.47281 * 60.00379 * 20 18 2 47 47 H 0.97005 * 120.00261 * 25.00085 * 21 18 2 48 48 H 0.97004 * 120.00382 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3570 6 8 1.8583 1.1584 2.4117 7 6 2.6500 -0.7285 3.5874 8 7 2.6987 0.2127 4.7090 9 7 3.7899 1.0160 5.0731 10 6 3.4520 1.7062 6.1077 11 7 2.1629 1.3681 6.4667 12 6 1.7027 0.4642 5.5865 13 8 0.5922 -0.0366 5.5805 14 6 1.4626 1.9149 7.6342 15 6 2.1577 3.2134 8.0592 16 6 3.6594 2.9562 8.2218 17 6 4.2824 2.7372 6.8364 18 6 2.0400 -0.7213 -1.2493 19 1 1.6767 -1.7490 -1.2492 20 6 3.5700 -0.7208 -1.2496 21 7 1.5516 -0.0307 -2.4454 22 6 1.4208 -0.7138 -3.6249 23 1 1.6780 -1.7617 -3.6735 24 6 0.9527 -0.0610 -4.7570 25 7 0.6342 1.2147 -4.6964 26 14 0.7735 -0.9930 -6.3659 27 1 -0.5867 -1.5832 -6.4472 28 1 0.9774 -0.0606 -7.5035 29 1 1.7875 -2.0763 -6.4259 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 1.9778 -1.5508 3.8325 35 1 3.6493 -1.1203 3.3978 36 1 0.4250 2.1237 7.3736 37 1 1.4965 1.1945 8.4516 38 1 1.9998 3.9765 7.2972 39 1 1.7424 3.5545 9.0075 40 1 4.1271 3.8167 8.6999 41 1 3.8131 2.0683 8.8351 42 1 4.2792 3.6738 6.2789 43 1 5.3054 2.3770 6.9454 44 1 3.9333 -1.2350 -2.1393 45 1 3.9330 0.3070 -1.2498 46 1 3.9337 -1.2344 -0.3596 47 1 1.3209 0.9105 -2.4019 48 1 0.3067 1.6709 -5.4874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725114370.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:15 Heat of formation + Delta-G solvation = 15.799258 kcal Electronic energy + Delta-G solvation = -29498.545269 eV Core-core repulsion = 25397.757915 eV Total energy + Delta-G solvation = -4100.787354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.75130 -39.70058 -37.92961 -37.08159 -36.62642 -33.92782 -33.77530 -32.80076 -31.74271 -29.87934 -29.10519 -28.41074 -27.80146 -24.83113 -23.97879 -23.02382 -22.88004 -21.82178 -20.33610 -20.12833 -19.97741 -17.69264 -17.59395 -17.24199 -16.63886 -16.25325 -16.04396 -15.37482 -15.10304 -14.82369 -14.75697 -14.61487 -14.51125 -13.87824 -13.79850 -13.55595 -13.37810 -13.18977 -13.06140 -12.57463 -12.41331 -12.21205 -12.15995 -11.80549 -11.66054 -11.65188 -11.53573 -11.48755 -11.15522 -10.94589 -10.81865 -10.68375 -10.50194 -10.33915 -10.20783 -9.88989 -9.77453 -9.58425 -9.01457 -8.76072 -8.63351 -6.98501 -5.76983 -3.06658 1.48040 1.75294 2.54676 2.68352 2.75270 3.35219 3.43431 3.48820 3.50239 3.86994 4.06721 4.15611 4.25108 4.54589 4.58664 4.75563 4.76038 4.84165 4.93511 4.96787 5.13624 5.17988 5.23141 5.30515 5.32981 5.42367 5.50414 5.59746 5.69062 5.69770 5.77472 5.91467 5.92643 6.12743 6.23841 6.32137 6.41593 6.44101 6.54101 6.64251 6.83733 6.96292 7.04217 7.46926 7.64290 7.68722 7.91945 8.34060 8.40681 9.51782 10.07314 10.42290 11.45373 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028227 B = 0.002058 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.703285 B =13599.541505 C =13669.124596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 H 0.084 0.916 4 N -0.714 5.714 5 C 0.495 3.505 6 O -0.527 6.527 7 C 0.143 3.857 8 N -0.437 5.437 9 N -0.267 5.267 10 C 0.276 3.724 11 N -0.556 5.556 12 C 0.657 3.343 13 O -0.554 6.554 14 C 0.131 3.869 15 C -0.138 4.138 16 C -0.124 4.124 17 C -0.040 4.040 18 C 0.169 3.831 19 H 0.051 0.949 20 C -0.164 4.164 21 N -0.718 5.718 22 C -0.238 4.238 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.398 0.602 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.036 0.964 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.413 0.590 30.355 31.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.102 0.898 4 N -0.366 5.366 5 C 0.279 3.721 6 O -0.403 6.403 7 C 0.017 3.983 8 N -0.257 5.257 9 N -0.088 5.088 10 C -0.003 4.003 11 N -0.286 5.286 12 C 0.357 3.643 13 O -0.427 6.427 14 C 0.009 3.991 15 C -0.176 4.176 16 C -0.162 4.162 17 C -0.080 4.080 18 C 0.058 3.942 19 H 0.069 0.931 20 C -0.224 4.224 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.232 0.768 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.074 0.702 29.491 30.585 hybrid contribution -0.703 -0.536 -0.687 1.120 sum 7.371 0.165 28.804 29.733 Atomic orbital electron populations 1.22048 0.94896 1.01828 1.02303 1.21351 0.94447 0.97536 0.83356 0.89796 1.45988 1.67057 1.13914 1.09619 1.20789 0.78618 0.87975 0.84768 1.90731 1.49157 1.15809 1.84571 1.21243 1.05240 0.89471 0.82334 1.48241 1.10515 1.39447 1.27456 1.76751 1.10896 1.07748 1.13449 1.24254 0.84964 0.97614 0.93472 1.46023 1.14766 1.40334 1.27436 1.16435 0.84923 0.81927 0.81026 1.91083 1.17904 1.57692 1.76027 1.21783 0.96896 0.95480 0.84893 1.21990 0.95731 0.96490 1.03362 1.21719 0.95147 1.03487 0.95839 1.20499 0.97855 0.95086 0.94512 1.20394 0.92135 0.95572 0.86068 0.93097 1.22443 0.98997 1.01107 0.99830 1.42296 1.78209 1.10684 1.04825 1.19187 1.36693 0.93902 0.87137 0.91137 1.24751 1.02034 0.96008 0.98107 1.69665 1.50432 1.08760 1.29014 0.86189 0.77754 0.78560 0.83653 1.21743 1.21816 1.20796 0.92995 0.93540 0.90110 0.76766 0.85898 0.85763 0.89020 0.90050 0.90272 0.88869 0.89383 0.90727 0.87841 0.87632 0.92632 0.93443 0.94547 0.78060 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.33 37.16 0.35 -2.47 16 2 C 0.14 2.45 2.21 -67.93 -0.15 2.30 16 3 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 4 N -0.71 -10.04 4.38 -53.80 -0.24 -10.28 16 5 C 0.50 7.65 7.86 -10.98 -0.09 7.56 16 6 O -0.53 -10.67 16.09 5.56 0.09 -10.58 16 7 C 0.14 1.68 6.87 -5.19 -0.04 1.64 16 8 N -0.44 -6.19 3.12 -66.40 -0.21 -6.39 16 9 N -0.27 -3.44 12.51 33.13 0.41 -3.03 16 10 C 0.28 2.78 7.73 -153.75 -1.19 1.59 16 11 N -0.56 -6.25 3.13 -117.55 -0.37 -6.62 16 12 C 0.66 10.02 8.64 -87.06 -0.75 9.26 16 13 O -0.55 -10.08 17.83 5.09 0.09 -9.99 16 14 C 0.13 0.93 6.88 -3.77 -0.03 0.91 16 15 C -0.14 -0.53 5.94 -26.46 -0.16 -0.68 16 16 C -0.12 -0.35 5.96 -26.37 -0.16 -0.51 16 17 C -0.04 -0.20 6.32 -27.44 -0.17 -0.37 16 18 C 0.17 3.26 2.52 -67.93 -0.17 3.09 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 C -0.16 -2.89 9.33 37.15 0.35 -2.55 16 21 N -0.72 -17.67 4.43 -53.43 -0.24 -17.91 16 22 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 23 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 26 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.68 7.44 -51.93 -0.39 1.29 16 33 H 0.40 4.24 8.39 -40.82 -0.34 3.90 16 34 H 0.12 1.20 8.12 -51.93 -0.42 0.78 16 35 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 39 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.07 0.20 8.11 -51.93 -0.42 -0.22 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.04 0.51 7.45 -51.93 -0.39 0.13 16 47 H 0.39 10.27 7.58 -40.82 -0.31 9.96 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 396.98 15.07 5.98 5.98 Total: -1.00 -38.64 396.98 -8.92 -47.56 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.70 Total: 8.64 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -2.45 Total: 12.68 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: 0.09 Total: -71.59 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.18 Total: -20.57 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.64 -8.92 -47.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725114370.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.360 kcal (2) G-P(sol) polarization free energy of solvation -38.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds