Wall clock time and date at job start Tue Mar 31 2020 19:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46908 * 2 1 4 4 N 1.46499 * 109.47042 * 120.00120 * 2 1 3 5 5 C 1.34774 * 119.99473 * 274.99639 * 4 2 1 6 6 O 1.21279 * 120.00716 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99715 * 180.02562 * 5 4 2 8 8 N 1.46497 * 109.47261 * 180.02562 * 7 5 4 9 9 N 1.40314 * 126.32180 * 269.69293 * 8 7 5 10 10 C 1.28874 * 108.11732 * 180.02562 * 9 8 7 11 11 N 1.38014 * 108.81599 * 1.11720 * 10 9 8 12 12 C 1.34299 * 108.32975 * 358.32055 * 11 10 9 13 13 O 1.21816 * 126.31958 * 181.52639 * 12 11 10 14 14 C 1.46720 * 124.15890 * 177.45392 * 11 10 9 15 15 C 1.53291 * 108.65611 * 19.61168 * 14 11 10 16 16 C 1.53228 * 109.36618 * 308.14059 * 15 14 11 17 17 C 1.51112 * 127.47026 * 181.73998 * 10 9 8 18 18 C 1.53004 * 109.46906 * 239.99777 * 2 1 3 19 19 H 1.09002 * 109.47194 * 300.00164 * 18 2 1 20 20 C 1.52995 * 109.46864 * 179.97438 * 18 2 1 21 21 N 1.46499 * 109.46824 * 59.99935 * 18 2 1 22 22 C 1.36935 * 119.99926 * 204.99960 * 21 18 2 23 23 H 1.08005 * 119.99877 * 359.97438 * 22 21 18 24 24 C 1.38811 * 120.00369 * 179.73019 * 22 21 18 25 25 N 1.31617 * 119.99773 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47154 * 89.99247 * 26 24 22 28 28 H 1.48496 * 109.47375 * 209.99772 * 26 24 22 29 29 H 1.48502 * 109.46736 * 329.99467 * 26 24 22 30 30 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46902 * 299.99810 * 1 2 3 32 32 H 1.08998 * 109.46903 * 60.00198 * 1 2 3 33 33 H 0.96996 * 119.99958 * 94.99865 * 4 2 1 34 34 H 1.09000 * 109.46827 * 300.00154 * 7 5 4 35 35 H 1.09002 * 109.46986 * 60.00156 * 7 5 4 36 36 H 1.09000 * 109.60364 * 139.36320 * 14 11 10 37 37 H 1.09006 * 109.60780 * 259.69289 * 14 11 10 38 38 H 1.08994 * 109.48532 * 68.10914 * 15 14 11 39 39 H 1.08999 * 109.48538 * 188.17416 * 15 14 11 40 40 H 1.08991 * 109.54394 * 190.53408 * 16 15 14 41 41 H 1.09002 * 109.54710 * 310.80806 * 16 15 14 42 42 H 1.09000 * 109.75478 * 78.00269 * 17 10 9 43 43 H 1.09002 * 109.78851 * 317.29284 * 17 10 9 44 44 H 1.09003 * 109.47025 * 179.97438 * 20 18 2 45 45 H 1.09002 * 109.47544 * 300.00188 * 20 18 2 46 46 H 1.09007 * 109.47281 * 60.00379 * 20 18 2 47 47 H 0.97005 * 120.00261 * 25.00085 * 21 18 2 48 48 H 0.97004 * 120.00382 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3570 6 8 1.8583 1.1584 2.4117 7 6 2.6500 -0.7285 3.5874 8 7 2.6987 0.2127 4.7090 9 7 3.7899 1.0160 5.0731 10 6 3.4520 1.7062 6.1077 11 7 2.1629 1.3681 6.4667 12 6 1.7027 0.4642 5.5865 13 8 0.5922 -0.0366 5.5805 14 6 1.4626 1.9149 7.6342 15 6 2.1577 3.2134 8.0592 16 6 3.6594 2.9562 8.2218 17 6 4.2824 2.7372 6.8364 18 6 2.0400 -0.7213 -1.2493 19 1 1.6767 -1.7490 -1.2492 20 6 3.5700 -0.7208 -1.2496 21 7 1.5516 -0.0307 -2.4454 22 6 1.4208 -0.7138 -3.6249 23 1 1.6780 -1.7617 -3.6735 24 6 0.9527 -0.0610 -4.7570 25 7 0.6342 1.2147 -4.6964 26 14 0.7735 -0.9930 -6.3659 27 1 -0.5867 -1.5832 -6.4472 28 1 0.9774 -0.0606 -7.5035 29 1 1.7875 -2.0763 -6.4259 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 1.9778 -1.5508 3.8325 35 1 3.6493 -1.1203 3.3978 36 1 0.4250 2.1237 7.3736 37 1 1.4965 1.1945 8.4516 38 1 1.9998 3.9765 7.2972 39 1 1.7424 3.5545 9.0075 40 1 4.1271 3.8167 8.6999 41 1 3.8131 2.0683 8.8351 42 1 4.2792 3.6738 6.2789 43 1 5.3054 2.3770 6.9454 44 1 3.9333 -1.2350 -2.1393 45 1 3.9330 0.3070 -1.2498 46 1 3.9337 -1.2344 -0.3596 47 1 1.3209 0.9105 -2.4019 48 1 0.3067 1.6709 -5.4874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725114370.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:14 Heat of formation + Delta-G solvation = -11.843156 kcal Electronic energy + Delta-G solvation = -29499.743934 eV Core-core repulsion = 25397.757915 eV Total energy + Delta-G solvation = -4101.986019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.65188 -41.00369 -38.86440 -38.37518 -37.72113 -35.64294 -34.52263 -33.75357 -33.38948 -31.31785 -30.16311 -29.85466 -28.78411 -25.92767 -25.52318 -24.29067 -23.64596 -22.90215 -21.64865 -21.48545 -20.68272 -19.41893 -18.71364 -18.42880 -17.63430 -17.31466 -16.99949 -16.73087 -16.48404 -16.07596 -15.65879 -15.45390 -15.21744 -15.20207 -15.12527 -14.85564 -14.71901 -14.28707 -14.11328 -13.98178 -13.62603 -13.35754 -13.19805 -13.11621 -12.96911 -12.91263 -12.71867 -12.61585 -12.29140 -12.15567 -12.08043 -11.88464 -11.85232 -11.74952 -11.51381 -11.46490 -11.34601 -10.99092 -10.77355 -10.18719 -9.65687 -9.02500 -7.92416 -5.21737 0.59046 0.93903 1.47034 1.48343 1.49323 1.50042 1.58078 1.92958 2.18385 2.59044 3.21504 3.41652 3.55852 3.61971 3.75368 3.79037 3.84549 3.93979 4.01975 4.11313 4.16569 4.31356 4.33335 4.38553 4.45842 4.55081 4.56879 4.73621 4.78897 4.85027 4.87730 4.89244 4.91975 5.00281 5.04731 5.06694 5.14658 5.18032 5.26057 5.35127 5.45863 5.51727 5.56484 5.60333 6.28032 6.47287 6.54782 6.86838 7.16742 7.34151 8.07360 8.30725 9.31185 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028227 B = 0.002058 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.703285 B =13599.541505 C =13669.124596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.153 3.847 3 H 0.055 0.945 4 N -0.697 5.697 5 C 0.494 3.506 6 O -0.581 6.581 7 C 0.143 3.857 8 N -0.446 5.446 9 N -0.300 5.300 10 C 0.285 3.715 11 N -0.555 5.555 12 C 0.637 3.363 13 O -0.598 6.598 14 C 0.118 3.882 15 C -0.131 4.131 16 C -0.116 4.116 17 C -0.041 4.041 18 C 0.169 3.831 19 H 0.065 0.935 20 C -0.154 4.154 21 N -0.732 5.732 22 C -0.231 4.231 23 H 0.083 0.917 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.973 3.027 27 H -0.289 1.289 28 H -0.300 1.300 29 H -0.266 1.266 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.420 0.580 34 H 0.144 0.856 35 H 0.164 0.836 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.126 0.874 44 H 0.045 0.955 45 H 0.029 0.971 46 H 0.078 0.922 47 H 0.370 0.630 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.432 -0.710 32.626 34.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.047 3.953 3 H 0.073 0.927 4 N -0.350 5.350 5 C 0.280 3.720 6 O -0.460 6.460 7 C 0.019 3.981 8 N -0.264 5.264 9 N -0.121 5.121 10 C 0.007 3.993 11 N -0.283 5.283 12 C 0.336 3.664 13 O -0.475 6.475 14 C -0.002 4.002 15 C -0.169 4.169 16 C -0.154 4.154 17 C -0.081 4.081 18 C 0.060 3.940 19 H 0.083 0.917 20 C -0.213 4.213 21 N -0.372 5.372 22 C -0.363 4.363 23 H 0.100 0.900 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.802 3.198 27 H -0.216 1.216 28 H -0.227 1.227 29 H -0.191 1.191 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.258 0.742 34 H 0.162 0.838 35 H 0.181 0.819 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.144 0.856 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.096 0.904 47 H 0.202 0.798 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.157 -0.661 31.820 33.409 hybrid contribution -1.307 -0.108 -1.254 1.814 sum 8.851 -0.769 30.566 31.831 Atomic orbital electron populations 1.21921 0.95542 1.02183 1.00463 1.20884 0.93745 0.96294 0.84361 0.92709 1.45707 1.66367 1.14745 1.08200 1.21511 0.77385 0.87412 0.85733 1.90712 1.51466 1.18380 1.85424 1.21493 1.07682 0.88974 0.80001 1.48486 1.10640 1.39763 1.27486 1.76757 1.10856 1.09268 1.15262 1.25336 0.84621 0.96938 0.92436 1.46318 1.15325 1.39115 1.27498 1.16837 0.84791 0.82703 0.82076 1.91022 1.19586 1.59518 1.77396 1.22191 0.96425 0.97644 0.83951 1.22032 0.96520 0.94057 1.04275 1.21755 0.94036 1.05080 0.94542 1.20884 0.98178 0.93766 0.95229 1.20574 0.93185 0.95634 0.84624 0.91665 1.22293 0.97159 1.00504 1.01377 1.42497 1.78505 1.10188 1.06004 1.19605 1.34483 0.94342 0.87838 0.89962 1.25575 1.03109 0.96882 1.01603 1.69839 1.52527 1.10485 1.29419 0.85141 0.77856 0.77402 0.79365 1.21635 1.22743 1.19099 0.91423 0.94364 0.92920 0.74214 0.83820 0.81880 0.90556 0.88419 0.91205 0.86015 0.86403 0.90086 0.86954 0.85562 0.93631 0.95139 0.90362 0.79813 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 9.33 71.98 0.67 -4.71 16 2 C 0.15 5.45 2.21 45.00 0.10 5.55 16 3 H 0.05 2.31 7.58 -2.39 -0.02 2.29 16 4 N -0.70 -18.62 4.38 -442.52 -1.94 -20.56 16 5 C 0.49 15.00 7.86 87.66 0.69 15.69 16 6 O -0.58 -24.14 16.09 -3.03 -0.05 -24.19 16 7 C 0.14 3.16 6.87 85.64 0.59 3.75 16 8 N -0.45 -12.44 3.12 -481.99 -1.50 -13.94 16 9 N -0.30 -7.47 12.51 -49.11 -0.61 -8.09 16 10 C 0.28 5.41 7.73 137.75 1.06 6.47 16 11 N -0.55 -12.29 3.13 -644.26 -2.02 -14.31 16 12 C 0.64 19.73 8.64 179.10 1.55 21.28 16 13 O -0.60 -22.56 17.83 -4.72 -0.08 -22.64 16 14 C 0.12 1.59 6.88 86.43 0.59 2.18 16 15 C -0.13 -0.68 5.94 30.77 0.18 -0.50 16 16 C -0.12 -0.24 5.96 30.83 0.18 -0.06 16 17 C -0.04 -0.30 6.32 30.14 0.19 -0.11 16 18 C 0.17 6.35 2.52 44.99 0.11 6.47 16 19 H 0.07 2.31 8.08 -2.39 -0.02 2.29 16 20 C -0.15 -5.17 9.33 71.98 0.67 -4.50 16 21 N -0.73 -36.40 4.43 -322.94 -1.43 -37.83 16 22 C -0.23 -12.52 9.93 84.03 0.83 -11.68 16 23 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 24 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 25 N -0.97 -60.31 13.06 21.65 0.28 -60.02 16 26 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 29 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 2.28 7.44 -2.39 -0.02 2.26 16 33 H 0.42 7.65 8.39 -92.71 -0.78 6.87 16 34 H 0.14 2.55 8.12 -2.39 -0.02 2.53 16 35 H 0.16 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.07 0.53 8.10 -2.39 -0.02 0.51 16 39 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 41 H 0.08 0.13 8.11 -2.39 -0.02 0.11 16 42 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.96 7.45 -2.38 -0.02 1.94 16 47 H 0.37 20.50 7.58 -92.70 -0.70 19.80 16 48 H 0.25 15.08 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -88.87 396.98 2.07 -86.80 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.50 Total: 30.85 kcal Atomic # 6 Polarization: 27.82 SS G_CDS: 7.90 Total: 35.72 kcal Atomic # 7 Polarization: -147.53 SS G_CDS: -7.22 Total: -154.76 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.13 Total: -46.83 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -88.87 2.07 -86.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725114370.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.959 kcal (2) G-P(sol) polarization free energy of solvation -88.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds