Wall clock time and date at job start Tue Mar 31 2020 20:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46573 * 2 1 4 4 C 1.52996 * 109.46908 * 119.99822 * 2 1 3 5 5 N 1.46507 * 109.47025 * 174.99825 * 4 2 1 6 6 C 1.34771 * 120.00230 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00012 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47216 * 180.02562 * 8 6 5 10 10 N 1.46495 * 109.47344 * 180.02562 * 9 8 6 11 11 C 1.36887 * 126.40003 * 89.99753 * 10 9 8 12 12 C 1.34663 * 106.81624 * 180.02562 * 11 10 9 13 13 N 1.34124 * 108.02739 * 359.97438 * 12 11 10 14 14 C 1.30505 * 109.25140 * 359.73079 * 13 12 11 15 15 N 1.46899 * 109.46950 * 240.00153 * 2 1 3 16 16 C 1.46901 * 110.99679 * 306.04509 * 15 2 1 17 17 C 1.46893 * 111.00143 * 69.99620 * 15 2 1 18 18 C 1.50706 * 109.47176 * 169.99759 * 17 15 2 19 19 O 1.21295 * 119.99584 * 0.02562 * 18 17 15 20 20 N 1.34774 * 120.00020 * 180.02562 * 18 17 15 21 21 C 1.37095 * 119.99737 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00254 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99943 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00099 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00243 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46883 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47233 * 120.00270 * 25 23 21 28 28 H 1.48501 * 109.47364 * 240.00343 * 25 23 21 29 29 H 1.08997 * 109.47238 * 59.99883 * 1 2 3 30 30 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47325 * 299.99882 * 1 2 3 32 32 H 1.08997 * 109.47635 * 294.99818 * 4 2 1 33 33 H 1.09007 * 109.47087 * 55.00447 * 4 2 1 34 34 H 0.97000 * 119.99686 * 359.97438 * 5 4 2 35 35 H 1.08996 * 109.47322 * 300.00066 * 8 6 5 36 36 H 1.08996 * 109.47155 * 60.00087 * 8 6 5 37 37 H 1.09006 * 109.46718 * 300.00201 * 9 8 6 38 38 H 1.09006 * 109.47272 * 59.99716 * 9 8 6 39 39 H 1.07997 * 126.58817 * 359.96727 * 11 10 9 40 40 H 1.08004 * 125.99105 * 180.02562 * 12 11 10 41 41 H 1.07998 * 125.64983 * 180.29740 * 14 13 12 42 42 H 1.09007 * 109.47214 * 183.95845 * 16 15 2 43 43 H 1.09002 * 109.47259 * 303.95383 * 16 15 2 44 44 H 1.08999 * 109.47697 * 63.95865 * 16 15 2 45 45 H 1.09001 * 109.46739 * 50.00168 * 17 15 2 46 46 H 1.09000 * 109.47767 * 290.00427 * 17 15 2 47 47 H 0.96994 * 119.99756 * 0.02562 * 20 18 17 48 48 H 0.96999 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1911 7 8 3.5700 -1.8832 3.1400 8 6 5.6750 -1.5359 2.1310 9 6 6.1851 -2.2572 3.3802 10 7 7.6451 -2.3613 3.3221 11 6 8.5444 -1.4526 3.8113 12 6 9.7722 -1.9385 3.5468 13 7 9.6268 -3.1120 2.9140 14 6 8.3553 -3.3747 2.7813 15 7 2.0196 -0.6925 -1.1995 16 6 1.4342 -2.0354 -1.3078 17 6 1.7528 0.0972 -2.4090 18 6 2.4773 -0.5163 -3.5794 19 8 3.1495 -1.5136 -3.4215 20 7 2.3785 0.0432 -4.8016 21 6 3.0372 -0.5152 -5.8664 22 1 3.6350 -1.4037 -5.7259 23 6 2.9348 0.0612 -7.1265 24 7 2.2071 1.1420 -7.2975 25 14 3.8329 -0.6992 -8.5773 26 1 4.5781 -1.9009 -8.1234 27 1 2.8490 -1.0913 -9.6182 28 1 4.7851 0.2897 -9.1436 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7517 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2951 34 1 3.9824 -0.4628 0.4315 35 1 5.9637 -2.0989 1.2435 36 1 6.1093 -0.5372 2.0849 37 1 5.8963 -1.6945 4.2680 38 1 5.7507 -3.2559 3.4259 39 1 8.3136 -0.5240 4.3121 40 1 10.7098 -1.4663 3.8006 41 1 7.9399 -4.2552 2.3139 42 1 1.8663 -2.5522 -2.1648 43 1 1.6465 -2.5987 -0.3991 44 1 0.3555 -1.9521 -1.4399 45 1 2.1024 1.1189 -2.2603 46 1 0.6813 0.1053 -2.6087 47 1 1.8413 0.8409 -4.9277 48 1 2.1359 1.5446 -8.1771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725171969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:07 Heat of formation + Delta-G solvation = -24.809725 kcal Electronic energy + Delta-G solvation = -28676.814113 eV Core-core repulsion = 24574.265821 eV Total energy + Delta-G solvation = -4102.548292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.93126 -40.97443 -40.33522 -38.77033 -36.00615 -35.75296 -35.24068 -33.25290 -32.32853 -31.32779 -30.25672 -29.31774 -27.56979 -27.02979 -25.58397 -24.80309 -22.24620 -21.83426 -21.43023 -21.10286 -20.61978 -19.79761 -18.68357 -18.04259 -17.46330 -17.17295 -17.02474 -16.58079 -16.48393 -16.27392 -15.94758 -15.76457 -15.28082 -15.15034 -14.87987 -14.80347 -14.52922 -14.36485 -14.15229 -13.94010 -13.74336 -13.62456 -13.44545 -13.36554 -13.07213 -12.86961 -12.79040 -12.43007 -12.37647 -12.34424 -12.26536 -12.11327 -11.75212 -11.43368 -11.08887 -10.92062 -10.57216 -10.25159 -10.00908 -9.96846 -9.43220 -9.18057 -8.45086 -5.92671 1.13947 1.36754 1.42557 1.55660 1.61265 1.76115 2.09856 2.24509 2.28349 2.39418 2.78113 3.22679 3.46139 3.66782 3.73023 3.76675 3.87786 3.90973 4.07510 4.16198 4.26244 4.31855 4.37541 4.39020 4.44841 4.54792 4.58617 4.63504 4.65514 4.68916 4.79929 4.81614 4.82443 4.86289 5.00795 5.21658 5.30643 5.36346 5.43448 5.49329 5.85228 5.89217 6.07759 6.20972 6.26920 6.57736 6.63607 7.16153 7.16382 7.22822 7.60926 8.16797 8.72466 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009618 B = 0.002378 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.595919 B =11773.163773 C =14163.385629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 H 0.105 0.895 4 C 0.134 3.866 5 N -0.708 5.708 6 C 0.519 3.481 7 O -0.584 6.584 8 C -0.148 4.148 9 C 0.128 3.872 10 N -0.456 5.456 11 C -0.049 4.049 12 C -0.060 4.060 13 N -0.539 5.539 14 C 0.172 3.828 15 N -0.521 5.521 16 C 0.026 3.974 17 C 0.058 3.942 18 C 0.443 3.557 19 O -0.612 6.612 20 N -0.577 5.577 21 C -0.326 4.326 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.988 3.012 26 H -0.274 1.274 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.415 0.585 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.203 0.797 40 H 0.180 0.820 41 H 0.223 0.777 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.033 0.967 45 H 0.113 0.887 46 H 0.067 0.933 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 1.540 21.117 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.039 4.039 3 H 0.123 0.877 4 C 0.010 3.990 5 N -0.359 5.359 6 C 0.306 3.694 7 O -0.465 6.465 8 C -0.189 4.189 9 C 0.005 3.995 10 N -0.139 5.139 11 C -0.182 4.182 12 C -0.207 4.207 13 N -0.258 5.258 14 C -0.111 4.111 15 N -0.245 5.245 16 C -0.122 4.122 17 C -0.073 4.073 18 C 0.230 3.770 19 O -0.498 6.498 20 N -0.215 5.215 21 C -0.456 4.456 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.812 3.188 26 H -0.198 1.198 27 H -0.198 1.198 28 H -0.198 1.198 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.251 0.749 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.220 0.780 40 H 0.198 0.802 41 H 0.239 0.761 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.131 0.869 46 H 0.085 0.915 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.430 0.138 21.489 21.537 hybrid contribution -1.193 0.730 -1.388 1.971 sum 0.237 0.868 20.100 20.120 Atomic orbital electron populations 1.22368 0.95259 1.02857 1.03631 1.22099 0.94525 0.98789 0.88518 0.87744 1.21390 0.79957 1.00528 0.97140 1.45897 1.08057 1.58589 1.23335 1.20572 0.90081 0.76966 0.81802 1.90703 1.71255 1.49738 1.34814 1.21909 0.91527 1.04902 1.00562 1.21591 0.74874 1.04072 0.98934 1.45728 1.07777 1.17257 1.43112 1.23229 0.89265 0.98790 1.06963 1.22701 0.98726 0.94510 1.04719 1.70268 1.18016 1.17574 1.19966 1.25488 0.86994 0.96097 1.02494 1.61730 1.59070 1.02613 1.01083 1.22400 0.96783 0.90579 1.02422 1.21747 0.98687 0.98291 0.88578 1.20821 0.85419 0.86229 0.84514 1.90474 1.45758 1.28668 1.84916 1.41949 1.45069 1.27520 1.06938 1.19640 1.27343 1.10984 0.87642 0.90395 1.25966 0.98013 0.96501 1.00834 1.69668 1.40427 1.20877 1.25307 0.84935 0.78059 0.78154 0.77606 1.19841 1.19850 1.19759 0.91899 0.92295 0.89826 0.89964 0.92521 0.74898 0.87741 0.86637 0.87469 0.87854 0.78042 0.80246 0.76078 0.92776 0.91184 0.94855 0.86933 0.91510 0.77106 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 8.44 71.98 0.61 -2.19 16 2 C 0.07 1.23 2.47 44.91 0.11 1.34 16 3 H 0.10 1.58 7.93 -2.39 -0.02 1.56 16 4 C 0.13 2.42 4.85 86.38 0.42 2.84 16 5 N -0.71 -13.18 5.39 -463.05 -2.50 -15.68 16 6 C 0.52 9.92 7.83 87.66 0.69 10.60 16 7 O -0.58 -14.68 15.98 -3.05 -0.05 -14.73 16 8 C -0.15 -2.03 6.02 29.85 0.18 -1.85 16 9 C 0.13 1.68 5.44 86.38 0.47 2.15 16 10 N -0.46 -7.33 2.75 -529.06 -1.46 -8.79 16 11 C -0.05 -0.77 11.58 83.08 0.96 0.19 16 12 C -0.06 -1.20 11.87 83.52 0.99 -0.21 16 13 N -0.54 -13.39 11.25 -200.31 -2.25 -15.64 16 14 C 0.17 3.36 12.56 180.26 2.26 5.62 16 15 N -0.52 -13.55 3.89 -901.62 -3.51 -17.06 16 16 C 0.03 0.74 8.32 127.69 1.06 1.81 16 17 C 0.06 1.72 5.02 85.56 0.43 2.15 16 18 C 0.44 19.36 7.51 87.66 0.66 20.02 16 19 O -0.61 -31.30 13.88 -3.08 -0.04 -31.34 16 20 N -0.58 -28.05 5.29 -306.98 -1.62 -29.67 16 21 C -0.33 -17.90 9.68 84.04 0.81 -17.08 16 22 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16 25 Si 0.99 42.19 29.55 68.60 2.03 44.22 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 H 0.06 1.01 6.91 -2.39 -0.02 1.00 16 30 H 0.06 0.98 6.42 -2.38 -0.02 0.97 16 31 H 0.08 0.96 8.14 -2.38 -0.02 0.95 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.18 6.71 -2.38 -0.02 1.16 16 34 H 0.41 7.74 8.14 -92.71 -0.75 6.99 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.11 1.29 8.10 -2.38 -0.02 1.27 16 38 H 0.10 1.38 8.10 -2.38 -0.02 1.36 16 39 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 41 H 0.22 3.07 8.06 -2.91 -0.02 3.05 16 42 H 0.05 2.03 5.88 -2.38 -0.01 2.02 16 43 H 0.07 1.81 6.40 -2.39 -0.02 1.79 16 44 H 0.03 0.85 6.46 -2.39 -0.02 0.84 16 45 H 0.11 2.82 7.93 -2.39 -0.02 2.80 16 46 H 0.07 1.80 7.06 -2.39 -0.02 1.79 16 47 H 0.40 18.28 7.90 -92.71 -0.73 17.54 16 48 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -73.34 395.60 0.51 -72.82 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: -0.49 Total: 38.99 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 10.12 Total: 25.14 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -11.05 Total: -135.11 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.09 Total: -46.07 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -73.34 0.51 -72.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725171969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.014 kcal (2) G-P(sol) polarization free energy of solvation -73.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds