Wall clock time and date at job start Tue Mar 31 2020 19:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08988 * 109.47441 * 2 1 4 4 N 1.46500 * 109.47088 * 120.00240 * 2 1 3 5 5 C 1.36938 * 119.99828 * 274.99607 * 4 2 1 6 6 H 1.07999 * 120.00098 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99871 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00019 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00051 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47231 * 89.99992 * 9 7 5 11 11 H 1.48499 * 109.47047 * 209.99738 * 9 7 5 12 12 H 1.48496 * 109.47126 * 329.99313 * 9 7 5 13 13 C 1.53002 * 109.46917 * 239.99670 * 2 1 3 14 14 H 1.09003 * 109.51008 * 64.90205 * 13 2 1 15 15 C 1.53293 * 109.51402 * 185.00145 * 13 2 1 16 16 N 1.47148 * 108.38788 * 172.28186 * 15 13 2 17 17 C 1.34769 * 120.98698 * 129.44296 * 16 15 13 18 18 O 1.21282 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00473 * 180.02562 * 17 16 15 20 20 C 1.52992 * 109.47499 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.47499 * 180.02562 * 20 19 17 22 22 C 1.39671 * 127.05353 * 124.99714 * 21 20 19 23 23 N 1.31374 * 105.90144 * 179.97438 * 22 21 20 24 24 N 1.28604 * 108.72028 * 359.97438 * 23 22 21 25 25 C 1.46500 * 124.62059 * 179.73376 * 24 23 22 26 26 N 1.28606 * 110.75874 * 0.02562 * 24 23 22 27 27 C 1.47158 * 118.03411 * 309.71418 * 16 15 13 28 28 C 1.52881 * 108.60287 * 50.22783 * 27 16 15 29 29 O 1.42958 * 109.29866 * 307.93228 * 28 27 16 30 30 H 1.08999 * 109.46985 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46576 * 299.99959 * 1 2 3 32 32 H 1.08996 * 109.46985 * 59.99571 * 1 2 3 33 33 H 0.96999 * 120.00191 * 94.99643 * 4 2 1 34 34 H 0.97005 * 120.00199 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.67933 * 52.55372 * 15 13 2 36 36 H 1.09003 * 109.71093 * 292.01966 * 15 13 2 37 37 H 1.09003 * 109.46790 * 59.99577 * 19 17 16 38 38 H 1.09005 * 109.46490 * 299.99793 * 19 17 16 39 39 H 1.09006 * 109.47195 * 59.99522 * 20 19 17 40 40 H 1.09009 * 109.46870 * 299.99896 * 20 19 17 41 41 H 1.08006 * 127.04676 * 359.96961 * 22 21 20 42 42 H 1.08996 * 109.46749 * 90.02853 * 25 24 23 43 43 H 1.08995 * 109.47053 * 210.02534 * 25 24 23 44 44 H 1.08997 * 109.46968 * 330.02814 * 25 24 23 45 45 H 1.08992 * 109.68287 * 170.00238 * 27 16 15 46 46 H 1.08996 * 109.68066 * 290.56260 * 27 16 15 47 47 H 1.09005 * 109.58124 * 187.92508 * 28 27 16 48 48 H 1.08999 * 109.41160 * 67.84226 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8928 1.0405 2.4241 7 6 2.6114 -0.6621 3.5092 8 7 2.7376 -0.0054 4.6429 9 14 3.0555 -2.4746 3.4253 10 1 4.4884 -2.6168 3.0620 11 1 2.8155 -3.1048 4.7483 12 1 2.2159 -3.1430 2.3990 13 6 2.0400 -0.7213 -1.2492 14 1 1.7504 -0.1599 -2.1375 15 6 3.5677 -0.8319 -1.1889 16 7 4.0155 -1.6867 -2.2998 17 6 4.9960 -1.2851 -3.1326 18 8 5.5229 -0.2045 -2.9725 19 6 5.4369 -2.1780 -4.2637 20 6 6.5538 -1.4901 -5.0511 21 6 6.9943 -2.3828 -6.1825 22 6 7.0470 -2.0574 -7.5398 23 7 7.4878 -3.1334 -8.1511 24 7 7.6955 -4.0506 -7.2738 25 6 8.1858 -5.3973 -7.5777 26 7 7.4083 -3.6265 -6.0942 27 6 3.3568 -2.9905 -2.4783 28 6 1.8430 -2.7769 -2.4726 29 8 1.4751 -2.0333 -1.3084 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6318 1.1526 34 1 3.0603 -0.4628 5.4351 35 1 3.8663 -1.2771 -0.2397 36 1 4.0122 0.1586 -1.2857 37 1 4.5921 -2.3707 -4.9250 38 1 5.8045 -3.1213 -3.8596 39 1 7.3987 -1.2971 -4.3899 40 1 6.1857 -0.5469 -5.4551 41 1 6.7800 -1.1144 -7.9936 42 1 9.2751 -5.4044 -7.5399 43 1 7.7922 -6.1013 -6.8446 44 1 7.8550 -5.6880 -8.5748 45 1 3.6610 -3.4283 -3.4289 46 1 3.6338 -3.6566 -1.6613 47 1 1.3379 -3.7428 -2.4623 48 1 1.5519 -2.2233 -3.3653 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725330687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:26 Heat of formation + Delta-G solvation = 51.241787 kcal Electronic energy + Delta-G solvation = -29536.752889 eV Core-core repulsion = 25437.502438 eV Total energy + Delta-G solvation = -4099.250451 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.88451 -40.40153 -38.56696 -35.67996 -35.22669 -34.61043 -33.29523 -32.34637 -31.94249 -30.46738 -28.92712 -28.56925 -27.43429 -25.19883 -23.89904 -23.31551 -22.69538 -22.23607 -20.86606 -19.79643 -19.06623 -17.88746 -17.66475 -17.25155 -17.09041 -16.42849 -15.97382 -15.75818 -15.21738 -15.00303 -14.82484 -14.44490 -14.28479 -14.01815 -13.79384 -13.63364 -13.42537 -13.19562 -12.98244 -12.81575 -12.59607 -12.39344 -12.16361 -11.98156 -11.84973 -11.57751 -11.32490 -11.25880 -11.11369 -10.92141 -10.84834 -10.58912 -10.56421 -10.29842 -10.05711 -9.94846 -9.75616 -9.53749 -9.43929 -8.92940 -8.47382 -7.22480 -5.73323 -3.08260 1.45596 1.96575 2.07061 2.58369 2.87030 3.40987 3.46046 3.48418 3.71140 3.84677 4.21983 4.49487 4.53379 4.57258 4.63228 4.71313 4.79687 4.80704 4.85168 4.94760 4.99236 5.03647 5.18498 5.25265 5.26691 5.39336 5.47863 5.54709 5.58391 5.65197 5.69699 5.71413 5.82480 5.89977 5.96056 6.14821 6.25216 6.31511 6.32887 6.44543 6.50920 6.74019 7.07591 7.32330 7.34416 7.98129 8.03158 8.11496 8.45852 9.24981 9.97156 10.17977 11.44987 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.002403 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.652511 B =11650.853244 C =12036.101655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.188 3.812 3 H 0.070 0.930 4 N -0.743 5.743 5 C -0.241 4.241 6 H 0.091 0.909 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.879 3.121 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.074 3.926 14 H 0.060 0.940 15 C 0.085 3.915 16 N -0.615 5.615 17 C 0.515 3.485 18 O -0.538 6.538 19 C -0.132 4.132 20 C -0.014 4.014 21 C 0.006 3.994 22 C -0.021 4.021 23 N -0.292 5.292 24 N -0.162 5.162 25 C 0.108 3.892 26 N -0.286 5.286 27 C 0.070 3.930 28 C 0.047 3.953 29 O -0.364 6.364 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.198 0.802 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.949 -10.559 -27.691 30.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 H 0.087 0.913 4 N -0.386 5.386 5 C -0.371 4.371 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.709 3.291 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.199 1.199 13 C 0.015 3.985 14 H 0.078 0.922 15 C -0.037 4.037 16 N -0.349 5.349 17 C 0.303 3.697 18 O -0.415 6.415 19 C -0.173 4.173 20 C -0.053 4.053 21 C -0.157 4.157 22 C -0.203 4.203 23 N -0.133 5.133 24 N -0.062 5.062 25 C -0.032 4.032 26 N -0.129 5.129 27 C -0.053 4.053 28 C -0.031 4.031 29 O -0.282 6.282 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.199 0.801 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.215 0.785 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.121 0.879 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.623 -11.183 -27.583 30.491 hybrid contribution 0.168 -0.640 0.022 0.662 sum 6.791 -11.823 -27.561 30.749 Atomic orbital electron populations 1.22294 0.97968 1.01600 1.00108 1.20242 0.93006 0.94903 0.84051 0.91258 1.42766 1.79415 1.09591 1.06868 1.19073 1.36785 0.95471 0.85755 0.89129 1.24640 1.01503 0.97324 0.95554 1.69698 1.52715 1.35520 1.00241 0.86616 0.78453 0.87129 0.76890 1.21205 1.21865 1.19927 1.22981 0.91621 0.84046 0.99839 0.92175 1.22420 0.94955 0.97054 0.89298 1.48247 1.36901 1.19040 1.30730 1.20586 0.79087 0.87176 0.82821 1.90716 1.54968 1.22847 1.72999 1.21624 0.99776 0.99819 0.96066 1.19644 0.98200 0.95336 0.92165 1.23226 1.04175 0.91988 0.96265 1.24701 1.04891 0.98809 0.91941 1.74045 1.17784 0.98711 1.22771 1.47919 1.45315 1.12581 1.00410 1.22113 1.00989 0.75815 1.04234 1.74015 1.17201 1.13594 1.08052 1.22400 0.94359 0.85466 1.03124 1.22822 0.93301 0.97515 0.89475 1.88084 1.71059 1.27337 1.41706 0.92614 0.92339 0.94538 0.80074 0.93126 0.89242 0.88003 0.88972 0.88365 0.89055 0.88645 0.78496 0.89305 0.87905 0.87994 0.89141 0.90303 0.87945 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.30 37.16 0.35 -2.49 16 2 C 0.19 3.56 2.80 -67.93 -0.19 3.37 16 3 H 0.07 1.33 8.08 -51.94 -0.42 0.91 16 4 N -0.74 -17.27 4.05 -53.43 -0.22 -17.49 16 5 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 6 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 7 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.41 13.97 55.49 0.78 -28.63 16 9 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 12 H -0.27 -6.61 6.52 56.52 0.37 -6.24 16 13 C 0.07 1.18 2.57 -26.58 -0.07 1.11 16 14 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 15 C 0.08 1.39 5.82 -3.54 -0.02 1.37 16 16 N -0.61 -8.26 3.03 -172.53 -0.52 -8.78 16 17 C 0.52 6.82 7.71 -10.99 -0.08 6.74 16 18 O -0.54 -9.03 15.45 5.56 0.09 -8.94 16 19 C -0.13 -1.23 4.05 -27.89 -0.11 -1.34 16 20 C -0.01 -0.13 5.10 -27.89 -0.14 -0.27 16 21 C 0.01 0.06 6.61 -82.25 -0.54 -0.48 16 22 C -0.02 -0.19 12.15 -17.21 -0.21 -0.39 16 23 N -0.29 -2.87 12.05 30.67 0.37 -2.50 16 24 N -0.16 -1.45 4.35 -16.64 -0.07 -1.52 16 25 C 0.11 0.44 11.57 59.85 0.69 1.13 16 26 N -0.29 -2.95 12.04 33.71 0.41 -2.54 16 27 C 0.07 0.72 6.51 -3.74 -0.02 0.70 16 28 C 0.05 0.51 6.97 37.10 0.26 0.76 16 29 O -0.36 -5.61 9.25 -35.23 -0.33 -5.93 16 30 H 0.05 1.02 7.57 -51.93 -0.39 0.62 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.37 8.59 4.94 -40.82 -0.20 8.39 16 34 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 35 H 0.09 1.70 6.94 -51.93 -0.36 1.34 16 36 H 0.10 1.78 7.08 -51.93 -0.37 1.41 16 37 H 0.09 0.70 7.65 -51.93 -0.40 0.30 16 38 H 0.10 0.88 8.02 -51.93 -0.42 0.46 16 39 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 40 H 0.10 0.81 8.09 -51.92 -0.42 0.39 16 41 H 0.20 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 0.65 6.05 -51.93 -0.31 0.34 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -36.62 389.96 -6.22 -42.84 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.53 Total: 6.64 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.35 Total: 3.41 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.74 Total: -61.46 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.24 Total: -14.88 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.62 -6.22 -42.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725330687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.085 kcal (2) G-P(sol) polarization free energy of solvation -36.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds