Wall clock time and date at job start Tue Mar 31 2020 19:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08988 * 109.47441 * 2 1 4 4 N 1.46500 * 109.47088 * 120.00240 * 2 1 3 5 5 C 1.36938 * 119.99828 * 274.99607 * 4 2 1 6 6 H 1.07999 * 120.00098 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99871 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00019 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00051 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47231 * 89.99992 * 9 7 5 11 11 H 1.48499 * 109.47047 * 209.99738 * 9 7 5 12 12 H 1.48496 * 109.47126 * 329.99313 * 9 7 5 13 13 C 1.53002 * 109.46917 * 239.99670 * 2 1 3 14 14 H 1.09003 * 109.51008 * 64.90205 * 13 2 1 15 15 C 1.53293 * 109.51402 * 185.00145 * 13 2 1 16 16 N 1.47148 * 108.38788 * 172.28186 * 15 13 2 17 17 C 1.34769 * 120.98698 * 129.44296 * 16 15 13 18 18 O 1.21282 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00473 * 180.02562 * 17 16 15 20 20 C 1.52992 * 109.47499 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.47499 * 180.02562 * 20 19 17 22 22 C 1.39671 * 127.05353 * 124.99714 * 21 20 19 23 23 N 1.31374 * 105.90144 * 179.97438 * 22 21 20 24 24 N 1.28604 * 108.72028 * 359.97438 * 23 22 21 25 25 C 1.46500 * 124.62059 * 179.73376 * 24 23 22 26 26 N 1.28606 * 110.75874 * 0.02562 * 24 23 22 27 27 C 1.47158 * 118.03411 * 309.71418 * 16 15 13 28 28 C 1.52881 * 108.60287 * 50.22783 * 27 16 15 29 29 O 1.42958 * 109.29866 * 307.93228 * 28 27 16 30 30 H 1.08999 * 109.46985 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46576 * 299.99959 * 1 2 3 32 32 H 1.08996 * 109.46985 * 59.99571 * 1 2 3 33 33 H 0.96999 * 120.00191 * 94.99643 * 4 2 1 34 34 H 0.97005 * 120.00199 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.67933 * 52.55372 * 15 13 2 36 36 H 1.09003 * 109.71093 * 292.01966 * 15 13 2 37 37 H 1.09003 * 109.46790 * 59.99577 * 19 17 16 38 38 H 1.09005 * 109.46490 * 299.99793 * 19 17 16 39 39 H 1.09006 * 109.47195 * 59.99522 * 20 19 17 40 40 H 1.09009 * 109.46870 * 299.99896 * 20 19 17 41 41 H 1.08006 * 127.04676 * 359.96961 * 22 21 20 42 42 H 1.08996 * 109.46749 * 90.02853 * 25 24 23 43 43 H 1.08995 * 109.47053 * 210.02534 * 25 24 23 44 44 H 1.08997 * 109.46968 * 330.02814 * 25 24 23 45 45 H 1.08992 * 109.68287 * 170.00238 * 27 16 15 46 46 H 1.08996 * 109.68066 * 290.56260 * 27 16 15 47 47 H 1.09005 * 109.58124 * 187.92508 * 28 27 16 48 48 H 1.08999 * 109.41160 * 67.84226 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8928 1.0405 2.4241 7 6 2.6114 -0.6621 3.5092 8 7 2.7376 -0.0054 4.6429 9 14 3.0555 -2.4746 3.4253 10 1 4.4884 -2.6168 3.0620 11 1 2.8155 -3.1048 4.7483 12 1 2.2159 -3.1430 2.3990 13 6 2.0400 -0.7213 -1.2492 14 1 1.7504 -0.1599 -2.1375 15 6 3.5677 -0.8319 -1.1889 16 7 4.0155 -1.6867 -2.2998 17 6 4.9960 -1.2851 -3.1326 18 8 5.5229 -0.2045 -2.9725 19 6 5.4369 -2.1780 -4.2637 20 6 6.5538 -1.4901 -5.0511 21 6 6.9943 -2.3828 -6.1825 22 6 7.0470 -2.0574 -7.5398 23 7 7.4878 -3.1334 -8.1511 24 7 7.6955 -4.0506 -7.2738 25 6 8.1858 -5.3973 -7.5777 26 7 7.4083 -3.6265 -6.0942 27 6 3.3568 -2.9905 -2.4783 28 6 1.8430 -2.7769 -2.4726 29 8 1.4751 -2.0333 -1.3084 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6318 1.1526 34 1 3.0603 -0.4628 5.4351 35 1 3.8663 -1.2771 -0.2397 36 1 4.0122 0.1586 -1.2857 37 1 4.5921 -2.3707 -4.9250 38 1 5.8045 -3.1213 -3.8596 39 1 7.3987 -1.2971 -4.3899 40 1 6.1857 -0.5469 -5.4551 41 1 6.7800 -1.1144 -7.9936 42 1 9.2751 -5.4044 -7.5399 43 1 7.7922 -6.1013 -6.8446 44 1 7.8550 -5.6880 -8.5748 45 1 3.6610 -3.4283 -3.4289 46 1 3.6338 -3.6566 -1.6613 47 1 1.3379 -3.7428 -2.4623 48 1 1.5519 -2.2233 -3.3653 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725330687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:25 Heat of formation + Delta-G solvation = 24.052578 kcal Electronic energy + Delta-G solvation = -29537.931902 eV Core-core repulsion = 25437.502438 eV Total energy + Delta-G solvation = -4100.429463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.51592 -41.47940 -39.71854 -37.24555 -35.90703 -35.76878 -34.23142 -33.88669 -32.75510 -31.91146 -30.52405 -29.37910 -28.24233 -26.16796 -25.32357 -24.73366 -23.44254 -23.25456 -21.63671 -21.27046 -20.13658 -19.71136 -18.54283 -17.98533 -17.80282 -17.62318 -16.99152 -16.89410 -16.35912 -16.23987 -15.88817 -15.66776 -15.30630 -15.18427 -14.90137 -14.65656 -14.43179 -14.29523 -14.04185 -13.82581 -13.70625 -13.53307 -13.39766 -13.21551 -12.86320 -12.81397 -12.64527 -12.50990 -12.46353 -12.06444 -11.96872 -11.80295 -11.79179 -11.73247 -11.56035 -11.24996 -11.12274 -10.98920 -10.80744 -10.06688 -9.62169 -9.25131 -7.99568 -5.31012 0.80921 1.37366 1.39314 1.40568 1.47499 1.51833 1.57163 1.86520 2.49788 2.77341 3.12611 3.33216 3.44010 3.56617 3.76541 3.79311 3.94975 4.00079 4.11723 4.15381 4.17391 4.25792 4.31388 4.35540 4.35894 4.41638 4.54512 4.58268 4.63364 4.64495 4.78413 4.81793 4.82997 4.85498 5.01167 5.02720 5.05413 5.17455 5.21749 5.29661 5.34656 5.59441 5.77718 5.80627 6.20908 6.28571 6.34034 7.09070 7.11269 7.33997 7.87610 8.07719 9.22144 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.002403 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.652511 B =11650.853244 C =12036.101655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.176 3.824 3 H 0.061 0.939 4 N -0.743 5.743 5 C -0.220 4.220 6 H 0.060 0.940 7 C -0.065 4.065 8 N -0.985 5.985 9 Si 0.948 3.052 10 H -0.283 1.283 11 H -0.297 1.297 12 H -0.252 1.252 13 C 0.092 3.908 14 H 0.083 0.917 15 C 0.089 3.911 16 N -0.616 5.616 17 C 0.512 3.488 18 O -0.581 6.581 19 C -0.118 4.118 20 C -0.008 4.008 21 C -0.003 4.003 22 C -0.025 4.025 23 N -0.310 5.310 24 N -0.163 5.163 25 C 0.096 3.904 26 N -0.304 5.304 27 C 0.067 3.933 28 C 0.041 3.959 29 O -0.386 6.386 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.367 0.633 34 H 0.256 0.744 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.222 0.778 42 H 0.100 0.900 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.129 0.871 46 H 0.074 0.926 47 H 0.130 0.870 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 -13.125 -31.113 34.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.068 3.932 3 H 0.079 0.921 4 N -0.387 5.387 5 C -0.351 4.351 6 H 0.078 0.922 7 C -0.256 4.256 8 N -0.636 5.636 9 Si 0.776 3.224 10 H -0.210 1.210 11 H -0.224 1.224 12 H -0.177 1.177 13 C 0.033 3.967 14 H 0.101 0.899 15 C -0.034 4.034 16 N -0.349 5.349 17 C 0.302 3.698 18 O -0.461 6.461 19 C -0.158 4.158 20 C -0.048 4.048 21 C -0.165 4.165 22 C -0.206 4.206 23 N -0.152 5.152 24 N -0.064 5.064 25 C -0.043 4.043 26 N -0.147 5.147 27 C -0.055 4.055 28 C -0.036 4.036 29 O -0.305 6.305 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.201 0.799 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.239 0.761 42 H 0.119 0.881 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.147 0.853 46 H 0.092 0.908 47 H 0.148 0.852 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.100 -13.785 -31.084 34.546 hybrid contribution 0.332 0.194 0.972 1.045 sum 6.432 -13.591 -30.112 33.657 Atomic orbital electron populations 1.22125 0.96503 1.01556 1.00588 1.20488 0.93930 0.94765 0.84016 0.92117 1.42719 1.79685 1.09550 1.06743 1.19044 1.34337 0.94385 0.87328 0.92205 1.25409 1.02806 1.02085 0.95312 1.69875 1.55106 1.37495 1.01111 0.85500 0.78338 0.81631 0.76933 1.20983 1.22441 1.17655 1.22602 0.90710 0.84897 0.98497 0.89901 1.22078 0.95564 0.96462 0.89302 1.48327 1.37136 1.19772 1.29675 1.21309 0.78201 0.87033 0.83224 1.90700 1.56256 1.24966 1.74159 1.21589 1.00638 0.98831 0.94750 1.19548 0.97603 0.95743 0.91898 1.23223 1.04740 0.91967 0.96558 1.25152 1.04231 0.99529 0.91697 1.74037 1.18464 0.99329 1.23367 1.48394 1.44628 1.13556 0.99861 1.22519 1.01874 0.74212 1.05648 1.73968 1.17706 1.14102 1.08944 1.22657 0.94036 0.83762 1.05033 1.23166 0.93612 0.98379 0.88433 1.88036 1.71231 1.26943 1.44248 0.92806 0.94758 0.91144 0.79943 0.93550 0.92318 0.89967 0.86177 0.87492 0.90836 0.87991 0.76107 0.88116 0.86553 0.86344 0.85273 0.90790 0.85239 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.30 71.98 0.67 -4.40 16 2 C 0.18 6.61 2.80 44.99 0.13 6.73 16 3 H 0.06 2.37 8.08 -2.39 -0.02 2.35 16 4 N -0.74 -34.67 4.05 -322.95 -1.31 -35.98 16 5 C -0.22 -12.57 10.41 84.03 0.87 -11.69 16 6 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 7 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 8 N -0.98 -64.21 13.97 21.65 0.30 -63.91 16 9 Si 0.95 46.82 27.74 68.60 1.90 48.72 16 10 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 11 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 12 H -0.25 -11.39 6.52 99.48 0.65 -10.74 16 13 C 0.09 2.76 2.57 30.69 0.08 2.84 16 14 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 15 C 0.09 2.90 5.82 86.35 0.50 3.40 16 16 N -0.62 -15.30 3.03 -818.16 -2.48 -17.78 16 17 C 0.51 12.73 7.71 87.66 0.68 13.40 16 18 O -0.58 -19.42 15.45 -3.04 -0.05 -19.47 16 19 C -0.12 -1.86 4.05 29.85 0.12 -1.73 16 20 C -0.01 -0.14 5.10 29.85 0.15 0.02 16 21 C 0.00 -0.05 6.61 42.97 0.28 0.23 16 22 C -0.02 -0.38 12.15 85.11 1.03 0.65 16 23 N -0.31 -5.48 12.05 -56.87 -0.69 -6.17 16 24 N -0.16 -2.58 4.35 -206.56 -0.90 -3.48 16 25 C 0.10 0.56 11.57 127.77 1.48 2.04 16 26 N -0.30 -5.65 12.04 -47.25 -0.57 -6.22 16 27 C 0.07 1.14 6.51 86.21 0.56 1.70 16 28 C 0.04 0.70 6.97 71.94 0.50 1.21 16 29 O -0.39 -10.74 9.25 -148.98 -1.38 -12.11 16 30 H 0.05 1.86 7.57 -2.39 -0.02 1.84 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.37 16.95 4.94 -92.71 -0.46 16.49 16 34 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 35 H 0.06 2.25 6.94 -2.39 -0.02 2.23 16 36 H 0.08 2.95 7.08 -2.39 -0.02 2.94 16 37 H 0.12 1.27 7.65 -2.39 -0.02 1.25 16 38 H 0.11 1.56 8.02 -2.38 -0.02 1.54 16 39 H 0.07 1.50 8.10 -2.38 -0.02 1.48 16 40 H 0.10 1.56 8.09 -2.38 -0.02 1.54 16 41 H 0.22 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.10 0.34 8.14 -2.39 -0.02 0.33 16 43 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.13 1.19 6.05 -2.39 -0.01 1.18 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -82.51 389.96 2.82 -79.69 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.45 Total: 25.74 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 7.53 Total: 10.96 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -5.63 Total: -133.53 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.42 Total: -31.58 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.90 Total: 48.72 kcal Total: -82.51 2.82 -79.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725330687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.743 kcal (2) G-P(sol) polarization free energy of solvation -82.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds