Wall clock time and date at job start Tue Mar 31 2020 19:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47106 * 2 1 4 4 N 1.46497 * 109.47400 * 239.99558 * 2 1 3 5 5 C 1.36935 * 119.99960 * 85.00486 * 4 2 1 6 6 H 1.08005 * 119.99754 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00131 * 180.02562 * 5 4 2 8 8 N 1.31614 * 119.99955 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00054 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46992 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47169 * 119.99656 * 9 7 5 12 12 H 1.48497 * 109.47069 * 240.00011 * 9 7 5 13 13 C 1.53004 * 109.46782 * 119.99552 * 2 1 3 14 14 H 1.09000 * 109.51269 * 175.10163 * 13 2 1 15 15 C 1.53705 * 109.48649 * 295.36300 * 13 2 1 16 16 N 1.47154 * 108.16331 * 172.39854 * 15 13 2 17 17 C 1.34769 * 120.98486 * 129.43503 * 16 15 13 18 18 O 1.21282 * 119.99970 * 359.71636 * 17 16 15 19 19 C 1.50703 * 120.00473 * 179.72245 * 17 16 15 20 20 C 1.52992 * 109.47499 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.47499 * 180.02562 * 20 19 17 22 22 C 1.39671 * 127.05353 * 124.99714 * 21 20 19 23 23 N 1.31374 * 105.90144 * 179.97438 * 22 21 20 24 24 N 1.28604 * 108.72028 * 359.97438 * 23 22 21 25 25 C 1.46500 * 124.62059 * 179.73376 * 24 23 22 26 26 N 1.28606 * 110.75874 * 0.02562 * 24 23 22 27 27 C 1.47151 * 118.03512 * 309.16242 * 16 15 13 28 28 C 1.53301 * 108.38617 * 50.78402 * 27 16 15 29 29 O 1.42964 * 109.51046 * 55.00403 * 13 2 1 30 30 H 1.09007 * 109.47370 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47403 * 300.00214 * 1 2 3 32 32 H 1.09005 * 109.46790 * 60.00490 * 1 2 3 33 33 H 0.97001 * 120.00528 * 264.99895 * 4 2 1 34 34 H 0.97001 * 119.99493 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.83939 * 52.72415 * 15 13 2 36 36 H 1.08998 * 109.75178 * 292.02790 * 15 13 2 37 37 H 1.09003 * 109.46790 * 59.99577 * 19 17 16 38 38 H 1.09005 * 109.46490 * 299.99793 * 19 17 16 39 39 H 1.09006 * 109.47195 * 59.99522 * 20 19 17 40 40 H 1.09009 * 109.46870 * 299.99896 * 20 19 17 41 41 H 1.08006 * 127.04676 * 359.96961 * 22 21 20 42 42 H 1.08996 * 109.46749 * 90.02853 * 25 24 23 43 43 H 1.08995 * 109.47053 * 210.02534 * 25 24 23 44 44 H 1.08997 * 109.46968 * 330.02814 * 25 24 23 45 45 H 1.09002 * 109.68547 * 170.50552 * 27 16 15 46 46 H 1.09008 * 109.68437 * 291.05865 * 27 16 15 47 47 H 1.08998 * 109.50921 * 67.62106 * 28 27 16 48 48 H 1.09003 * 109.50854 * 187.77731 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6115 -0.6621 -3.5091 8 7 2.9245 -1.9392 -3.4500 9 14 2.7894 0.2695 -5.1185 10 1 2.3745 1.6817 -4.9213 11 1 4.2061 0.2266 -5.5613 12 1 1.9283 -0.3591 -6.1521 13 6 2.0399 -0.7212 1.2494 14 1 3.1263 -0.7982 1.2073 15 6 1.6255 0.0677 2.5018 16 7 1.9665 -0.7380 3.6850 17 6 2.6698 -0.2088 4.7056 18 8 3.0360 0.9464 4.6550 19 6 3.0014 -1.0522 5.9096 20 6 3.8001 -0.2176 6.9127 21 6 4.1323 -1.0613 8.1165 22 6 5.3995 -1.2999 8.6532 23 7 5.2094 -2.0842 9.6899 24 7 3.9505 -2.3210 9.8030 25 6 3.3520 -3.1635 10.8414 26 7 3.2890 -1.7223 8.8767 27 6 1.5115 -2.1369 3.7237 28 6 1.9269 -2.8168 2.4141 29 8 1.4703 -2.0311 1.3104 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2491 -1.6318 -1.1525 34 1 3.2478 -2.3964 -4.2420 35 1 0.5519 0.2553 2.4824 36 1 2.1637 1.0150 2.5352 37 1 3.5950 -1.9119 5.5986 38 1 2.0789 -1.3973 6.3766 39 1 3.2069 0.6424 7.2237 40 1 4.7226 0.1271 6.4454 41 1 6.3423 -0.9179 8.2903 42 1 3.1033 -2.5507 11.7078 43 1 2.4460 -3.6294 10.4539 44 1 4.0614 -3.9371 11.1351 45 1 1.9742 -2.6503 4.5667 46 1 0.4266 -2.1675 3.8253 47 1 3.0129 -2.9014 2.3763 48 1 1.4814 -3.8104 2.3626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725330688.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:29 Heat of formation + Delta-G solvation = 46.991187 kcal Electronic energy + Delta-G solvation = -29123.561601 eV Core-core repulsion = 25024.126830 eV Total energy + Delta-G solvation = -4099.434771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.88480 -40.39955 -38.49335 -35.51150 -35.23636 -34.51940 -33.30665 -32.52932 -31.93274 -30.28828 -28.63197 -28.22799 -27.07339 -25.28122 -24.29408 -23.43729 -22.69820 -22.20157 -20.87886 -19.65238 -19.08910 -17.81446 -17.35493 -17.18073 -17.04292 -16.33950 -15.94817 -15.74942 -15.18031 -15.05875 -14.71044 -14.50159 -14.37243 -13.94116 -13.80844 -13.53967 -13.31700 -13.24930 -12.94425 -12.83556 -12.65184 -12.40541 -12.12820 -11.96228 -11.85895 -11.30417 -11.27964 -11.12202 -11.11097 -10.84169 -10.71480 -10.57021 -10.51563 -10.25407 -10.02802 -9.81075 -9.77868 -9.63156 -9.44485 -8.88207 -8.47222 -6.91217 -5.71877 -3.00393 1.45342 1.96420 2.06988 2.53369 2.82763 3.46136 3.51852 3.53997 3.70934 3.98746 4.20740 4.48096 4.52843 4.56896 4.60065 4.76442 4.79318 4.79934 4.87471 4.95048 5.00379 5.11172 5.20178 5.27609 5.35753 5.46263 5.49971 5.61536 5.69211 5.70219 5.73485 5.80994 5.83603 5.95192 6.00689 6.02188 6.23094 6.32778 6.38267 6.48709 6.67524 6.84555 7.18018 7.28057 7.49257 7.74306 7.97913 8.05989 8.46419 9.58366 10.16182 10.52753 11.50665 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.001955 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.422121 B =14319.376296 C =14385.470862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.184 3.816 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.237 4.237 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.082 3.918 16 N -0.614 5.614 17 C 0.516 3.484 18 O -0.541 6.541 19 C -0.133 4.133 20 C -0.013 4.013 21 C 0.006 3.994 22 C -0.020 4.020 23 N -0.291 5.291 24 N -0.162 5.162 25 C 0.108 3.892 26 N -0.287 5.287 27 C 0.072 3.928 28 C 0.046 3.954 29 O -0.358 6.358 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.389 0.611 34 H 0.254 0.746 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.198 0.802 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.498 -3.597 29.072 29.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C 0.017 3.983 14 H 0.082 0.918 15 C -0.040 4.040 16 N -0.348 5.348 17 C 0.305 3.695 18 O -0.418 6.418 19 C -0.173 4.173 20 C -0.053 4.053 21 C -0.157 4.157 22 C -0.203 4.203 23 N -0.133 5.133 24 N -0.062 5.062 25 C -0.032 4.032 26 N -0.130 5.130 27 C -0.051 4.051 28 C -0.033 4.033 29 O -0.276 6.276 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.223 0.777 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.215 0.785 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.987 -3.737 29.792 30.042 hybrid contribution 0.685 0.495 -1.275 1.529 sum -0.302 -3.242 28.518 28.703 Atomic orbital electron populations 1.22413 0.98673 1.01596 0.99538 1.20201 0.92814 0.94636 0.84985 0.92281 1.42361 1.77840 1.10964 1.04908 1.19303 1.36349 0.93888 0.87333 0.91095 1.24741 1.02286 0.95972 0.98024 1.69689 1.50932 1.08645 1.28662 0.86132 0.77243 0.78810 0.84109 1.20551 1.21952 1.21944 1.23057 0.97582 0.82958 0.94714 0.91837 1.22575 1.01827 0.95846 0.83797 1.48202 1.54783 1.12632 1.19166 1.20607 0.77338 0.87853 0.83745 1.90706 1.53098 1.17896 1.80089 1.21628 1.02500 0.99254 0.93938 1.19640 1.01970 0.95350 0.88347 1.23213 0.90413 1.02103 0.99965 1.24715 1.00182 1.00685 0.94680 1.74054 1.00969 1.17571 1.20676 1.47914 1.01505 1.35031 1.21768 1.22112 0.99918 0.93593 0.87528 1.73993 1.26623 1.11066 1.01269 1.22514 1.00862 0.81777 0.99971 1.22902 0.99485 0.95209 0.85660 1.88105 1.67708 1.25718 1.46073 0.92467 0.94656 0.92924 0.77696 0.93650 0.90171 0.88175 0.88807 0.88352 0.89145 0.88608 0.78468 0.89331 0.87902 0.87974 0.89186 0.90382 0.92860 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.06 37.15 0.34 -2.66 16 2 C 0.18 3.70 2.77 -67.93 -0.19 3.51 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -18.29 5.10 -53.43 -0.27 -18.56 16 5 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 6 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 9 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 C 0.08 1.30 2.62 -26.36 -0.07 1.23 16 14 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.08 1.19 5.84 -3.32 -0.02 1.17 16 16 N -0.61 -7.62 3.01 -172.01 -0.52 -8.14 16 17 C 0.52 6.42 7.71 -10.99 -0.08 6.33 16 18 O -0.54 -8.53 15.45 5.56 0.09 -8.44 16 19 C -0.13 -1.17 4.05 -27.89 -0.11 -1.29 16 20 C -0.01 -0.12 5.10 -27.89 -0.14 -0.26 16 21 C 0.01 0.05 6.61 -82.25 -0.54 -0.49 16 22 C -0.02 -0.18 12.15 -17.21 -0.21 -0.39 16 23 N -0.29 -2.85 12.05 30.67 0.37 -2.48 16 24 N -0.16 -1.41 4.35 -16.64 -0.07 -1.48 16 25 C 0.11 0.40 11.57 59.85 0.69 1.10 16 26 N -0.29 -2.84 12.04 33.71 0.41 -2.43 16 27 C 0.07 0.70 6.54 -3.53 -0.02 0.68 16 28 C 0.05 0.55 6.99 37.31 0.26 0.81 16 29 O -0.36 -5.99 9.24 -35.23 -0.33 -6.32 16 30 H 0.06 1.11 7.56 -51.92 -0.39 0.72 16 31 H 0.03 0.54 6.42 -51.93 -0.33 0.21 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.39 10.67 7.58 -40.82 -0.31 10.36 16 34 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.08 1.11 6.29 -51.93 -0.33 0.79 16 36 H 0.10 1.53 7.08 -51.93 -0.37 1.17 16 37 H 0.09 0.72 7.66 -51.93 -0.40 0.33 16 38 H 0.10 0.79 8.02 -51.93 -0.42 0.37 16 39 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.10 0.80 8.09 -51.92 -0.42 0.38 16 41 H 0.20 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.09 0.63 6.05 -51.93 -0.31 0.32 16 46 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -36.24 391.87 -6.54 -42.78 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.47 Total: 6.86 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -0.35 Total: 2.45 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.64 Total: -60.81 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.24 Total: -14.76 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.24 -6.54 -42.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725330688.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.771 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds