Wall clock time and date at job start Tue Mar 31 2020 19:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47395 * 89.99619 * 9 7 5 11 11 H 1.48493 * 109.46907 * 209.99948 * 9 7 5 12 12 H 1.48506 * 109.46912 * 329.99546 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09004 * 109.51847 * 184.89878 * 13 2 1 15 15 C 1.53304 * 109.51243 * 64.74572 * 13 2 1 16 16 N 1.47154 * 108.38410 * 187.77398 * 15 13 2 17 17 C 1.34776 * 120.98142 * 230.55240 * 16 15 13 18 18 O 1.21285 * 119.99794 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99921 * 179.97438 * 17 16 15 20 20 C 1.53001 * 109.47273 * 180.02562 * 19 17 16 21 21 C 1.50694 * 109.47227 * 180.02562 * 20 19 17 22 22 C 1.39679 * 127.05362 * 124.70757 * 21 20 19 23 23 N 1.31381 * 105.90205 * 179.83498 * 22 21 20 24 24 N 1.28604 * 108.71682 * 0.43241 * 23 22 21 25 25 C 1.46492 * 124.61814 * 179.71649 * 24 23 22 26 26 N 1.28600 * 110.76176 * 359.71182 * 24 23 22 27 27 C 1.47147 * 118.03573 * 50.53922 * 16 15 13 28 28 C 1.53297 * 108.38372 * 309.46025 * 27 16 15 29 29 O 1.42959 * 109.51491 * 305.00226 * 13 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 34 34 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.67912 * 307.49997 * 15 13 2 36 36 H 1.08997 * 109.67809 * 68.05247 * 15 13 2 37 37 H 1.08999 * 109.47260 * 300.00829 * 19 17 16 38 38 H 1.09005 * 109.47196 * 60.00657 * 19 17 16 39 39 H 1.09004 * 109.46783 * 300.00433 * 20 19 17 40 40 H 1.08998 * 109.47276 * 59.99906 * 20 19 17 41 41 H 1.07993 * 127.04704 * 0.02562 * 22 21 20 42 42 H 1.09000 * 109.47017 * 269.99654 * 25 24 23 43 43 H 1.08998 * 109.47778 * 29.99911 * 25 24 23 44 44 H 1.09005 * 109.47182 * 150.00053 * 25 24 23 45 45 H 1.08997 * 109.68646 * 189.73520 * 27 16 15 46 46 H 1.08997 * 109.71486 * 69.20057 * 27 16 15 47 47 H 1.08997 * 109.51351 * 292.37644 * 28 27 16 48 48 H 1.09004 * 109.55695 * 172.25149 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.5210 0.1787 5.8861 11 1 3.8932 -0.3235 5.9147 12 1 3.0941 1.6951 4.8343 13 6 2.0400 -0.7212 -1.2491 14 1 3.1265 -0.7983 -1.2071 15 6 1.6295 0.0664 -2.4987 16 7 1.9649 -0.7374 -3.6848 17 6 2.6682 -0.2080 -4.7054 18 8 3.0341 0.9472 -4.6548 19 6 2.9999 -1.0514 -5.9094 20 6 3.7986 -0.2167 -6.9125 21 6 4.1297 -1.0599 -8.1167 22 6 3.8364 -0.7726 -9.4518 23 7 4.3122 -1.7790 -10.1495 24 7 4.8452 -2.6259 -9.3417 25 6 5.4766 -3.8828 -9.7510 26 7 4.7485 -2.2189 -8.1256 27 6 1.5099 -2.1362 -3.7236 28 6 1.9262 -2.8165 -2.4145 29 8 1.4706 -2.0311 -1.3103 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 3.2468 -2.3964 4.2425 35 1 0.5567 0.2576 -2.4760 36 1 2.1709 1.0119 -2.5309 37 1 3.5934 -1.9111 -5.5984 38 1 2.0774 -1.3966 -6.3765 39 1 3.2052 0.6432 -7.2235 40 1 4.7209 0.1282 -6.4453 41 1 3.3261 0.0997 -9.8327 42 1 4.7303 -4.6772 -9.7627 43 1 5.9011 -3.7683 -10.7483 44 1 6.2680 -4.1382 -9.0463 45 1 1.9719 -2.6493 -4.5670 46 1 0.4251 -2.1673 -3.8247 47 1 3.0123 -2.9011 -2.3775 48 1 1.4817 -3.8104 -2.3623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725330689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:31 Heat of formation + Delta-G solvation = 47.111529 kcal Electronic energy + Delta-G solvation = -29141.365207 eV Core-core repulsion = 25041.935655 eV Total energy + Delta-G solvation = -4099.429552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.88435 -40.40439 -38.49787 -35.51031 -35.23471 -34.51726 -33.30363 -32.53363 -31.93060 -30.29260 -28.63047 -28.22476 -27.08012 -25.28075 -24.29278 -23.43469 -22.69874 -22.19116 -20.88281 -19.65215 -19.08327 -17.80860 -17.37097 -17.16396 -17.03489 -16.34253 -15.94387 -15.76378 -15.18308 -15.06036 -14.77908 -14.45492 -14.20711 -14.09143 -13.77827 -13.53865 -13.31988 -13.22935 -12.99267 -12.80084 -12.64004 -12.39045 -12.12011 -11.94515 -11.89151 -11.35213 -11.22529 -11.11558 -11.10612 -10.82271 -10.71647 -10.57402 -10.50905 -10.26776 -10.04186 -9.81447 -9.77247 -9.62260 -9.44885 -8.87264 -8.47256 -6.90975 -5.71397 -2.99976 1.45772 1.96998 2.06629 2.53144 2.82884 3.46729 3.51808 3.53406 3.71162 3.99092 4.20842 4.48321 4.54365 4.57736 4.60626 4.75881 4.78644 4.81088 4.90141 4.95335 4.98712 5.11417 5.20954 5.27619 5.35832 5.47260 5.49128 5.61728 5.69634 5.70476 5.74134 5.81326 5.84059 5.94959 6.00878 6.02357 6.23183 6.33008 6.38502 6.48888 6.67672 6.84664 7.18158 7.28105 7.49652 7.74023 7.98201 8.05996 8.46889 9.58698 10.16549 10.53135 11.51076 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.001994 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.634537 B =14036.698486 C =14292.718252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.184 3.816 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.082 3.918 16 N -0.613 5.613 17 C 0.516 3.484 18 O -0.541 6.541 19 C -0.133 4.133 20 C -0.013 4.013 21 C 0.006 3.994 22 C -0.022 4.022 23 N -0.292 5.292 24 N -0.161 5.161 25 C 0.108 3.892 26 N -0.285 5.285 27 C 0.072 3.928 28 C 0.045 3.955 29 O -0.358 6.358 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.389 0.611 34 H 0.254 0.746 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.198 0.802 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 -3.829 -28.678 28.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.017 3.983 14 H 0.081 0.919 15 C -0.041 4.041 16 N -0.348 5.348 17 C 0.305 3.695 18 O -0.418 6.418 19 C -0.173 4.173 20 C -0.053 4.053 21 C -0.157 4.157 22 C -0.204 4.204 23 N -0.133 5.133 24 N -0.062 5.062 25 C -0.032 4.032 26 N -0.128 5.128 27 C -0.051 4.051 28 C -0.033 4.033 29 O -0.276 6.276 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.223 0.777 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.215 0.785 42 H 0.108 0.892 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.124 -4.378 -28.785 29.138 hybrid contribution -0.114 0.748 0.889 1.167 sum 1.010 -3.630 -27.896 28.149 Atomic orbital electron populations 1.22414 0.98672 1.01597 0.99531 1.20198 0.92809 0.94629 0.84983 0.92289 1.42356 1.77853 1.10967 1.04887 1.19256 1.36467 0.93857 0.87346 0.91158 1.24742 1.02267 0.95982 0.98020 1.69679 1.50881 1.08638 1.28745 0.86201 0.77243 0.78803 0.84014 1.21781 1.21861 1.20771 1.22975 0.97614 0.82997 0.94754 0.91881 1.22490 1.01904 0.95880 0.83782 1.48197 1.54852 1.12691 1.19023 1.20607 0.77270 0.87840 0.83818 1.90707 1.53024 1.17895 1.80155 1.21628 1.02164 0.99558 0.93977 1.19637 1.01443 0.95140 0.89094 1.23217 1.01809 0.93873 0.96822 1.24697 1.04971 0.99754 0.90954 1.74049 1.12989 1.01623 1.24658 1.47917 1.40285 1.17495 1.00456 1.22122 0.98717 0.79327 1.03026 1.74015 1.19485 1.13959 1.05341 1.22507 1.00813 0.81786 1.00025 1.22899 0.99530 0.95204 0.85640 1.88103 1.67743 1.25725 1.46035 0.92465 0.94657 0.92921 0.77691 0.93599 0.90165 0.88183 0.88287 0.88871 0.88680 0.89067 0.78523 0.89243 0.87999 0.87879 0.89168 0.90399 0.92837 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.06 37.16 0.34 -2.66 16 2 C 0.18 3.71 2.77 -67.94 -0.19 3.53 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -18.34 5.10 -53.43 -0.27 -18.62 16 5 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 9 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.08 1.30 2.61 -26.58 -0.07 1.23 16 14 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.08 1.19 5.82 -3.53 -0.02 1.17 16 16 N -0.61 -7.64 3.02 -172.28 -0.52 -8.16 16 17 C 0.52 6.43 7.71 -10.99 -0.08 6.34 16 18 O -0.54 -8.53 15.45 5.55 0.09 -8.45 16 19 C -0.13 -1.18 4.05 -27.88 -0.11 -1.29 16 20 C -0.01 -0.12 5.10 -27.89 -0.14 -0.26 16 21 C 0.01 0.05 6.61 -82.25 -0.54 -0.49 16 22 C -0.02 -0.18 12.15 -17.21 -0.21 -0.39 16 23 N -0.29 -2.82 12.05 30.67 0.37 -2.45 16 24 N -0.16 -1.42 4.35 -16.64 -0.07 -1.49 16 25 C 0.11 0.43 11.57 59.84 0.69 1.12 16 26 N -0.29 -2.89 12.04 33.71 0.41 -2.49 16 27 C 0.07 0.71 6.54 -3.54 -0.02 0.68 16 28 C 0.05 0.55 6.98 37.31 0.26 0.81 16 29 O -0.36 -6.02 9.24 -35.23 -0.33 -6.34 16 30 H 0.06 1.11 7.56 -51.93 -0.39 0.72 16 31 H 0.03 0.54 6.41 -51.93 -0.33 0.21 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.39 10.71 7.58 -40.82 -0.31 10.40 16 34 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.08 1.11 6.26 -51.93 -0.33 0.79 16 36 H 0.10 1.54 7.08 -51.93 -0.37 1.17 16 37 H 0.10 0.85 7.66 -51.93 -0.40 0.45 16 38 H 0.09 0.68 8.02 -51.93 -0.42 0.26 16 39 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 40 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.09 0.64 6.05 -51.93 -0.31 0.33 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -36.29 391.83 -6.54 -42.83 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.47 Total: 6.95 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -0.35 Total: 2.46 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.63 Total: -60.97 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.24 Total: -14.79 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.29 -6.54 -42.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725330689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.943 kcal (2) G-P(sol) polarization free energy of solvation -36.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds