Wall clock time and date at job start Tue Mar 31 2020 19:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47395 * 89.99619 * 9 7 5 11 11 H 1.48493 * 109.46907 * 209.99948 * 9 7 5 12 12 H 1.48506 * 109.46912 * 329.99546 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09004 * 109.51847 * 184.89878 * 13 2 1 15 15 C 1.53304 * 109.51243 * 64.74572 * 13 2 1 16 16 N 1.47154 * 108.38410 * 187.77398 * 15 13 2 17 17 C 1.34776 * 120.98142 * 230.55240 * 16 15 13 18 18 O 1.21285 * 119.99794 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99921 * 179.97438 * 17 16 15 20 20 C 1.53001 * 109.47273 * 180.02562 * 19 17 16 21 21 C 1.50694 * 109.47227 * 180.02562 * 20 19 17 22 22 C 1.39679 * 127.05362 * 124.70757 * 21 20 19 23 23 N 1.31381 * 105.90205 * 179.83498 * 22 21 20 24 24 N 1.28604 * 108.71682 * 0.43241 * 23 22 21 25 25 C 1.46492 * 124.61814 * 179.71649 * 24 23 22 26 26 N 1.28600 * 110.76176 * 359.71182 * 24 23 22 27 27 C 1.47147 * 118.03573 * 50.53922 * 16 15 13 28 28 C 1.53297 * 108.38372 * 309.46025 * 27 16 15 29 29 O 1.42959 * 109.51491 * 305.00226 * 13 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 34 34 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.67912 * 307.49997 * 15 13 2 36 36 H 1.08997 * 109.67809 * 68.05247 * 15 13 2 37 37 H 1.08999 * 109.47260 * 300.00829 * 19 17 16 38 38 H 1.09005 * 109.47196 * 60.00657 * 19 17 16 39 39 H 1.09004 * 109.46783 * 300.00433 * 20 19 17 40 40 H 1.08998 * 109.47276 * 59.99906 * 20 19 17 41 41 H 1.07993 * 127.04704 * 0.02562 * 22 21 20 42 42 H 1.09000 * 109.47017 * 269.99654 * 25 24 23 43 43 H 1.08998 * 109.47778 * 29.99911 * 25 24 23 44 44 H 1.09005 * 109.47182 * 150.00053 * 25 24 23 45 45 H 1.08997 * 109.68646 * 189.73520 * 27 16 15 46 46 H 1.08997 * 109.71486 * 69.20057 * 27 16 15 47 47 H 1.08997 * 109.51351 * 292.37644 * 28 27 16 48 48 H 1.09004 * 109.55695 * 172.25149 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.5210 0.1787 5.8861 11 1 3.8932 -0.3235 5.9147 12 1 3.0941 1.6951 4.8343 13 6 2.0400 -0.7212 -1.2491 14 1 3.1265 -0.7983 -1.2071 15 6 1.6295 0.0664 -2.4987 16 7 1.9649 -0.7374 -3.6848 17 6 2.6682 -0.2080 -4.7054 18 8 3.0341 0.9472 -4.6548 19 6 2.9999 -1.0514 -5.9094 20 6 3.7986 -0.2167 -6.9125 21 6 4.1297 -1.0599 -8.1167 22 6 3.8364 -0.7726 -9.4518 23 7 4.3122 -1.7790 -10.1495 24 7 4.8452 -2.6259 -9.3417 25 6 5.4766 -3.8828 -9.7510 26 7 4.7485 -2.2189 -8.1256 27 6 1.5099 -2.1362 -3.7236 28 6 1.9262 -2.8165 -2.4145 29 8 1.4706 -2.0311 -1.3103 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 3.2468 -2.3964 4.2425 35 1 0.5567 0.2576 -2.4760 36 1 2.1709 1.0119 -2.5309 37 1 3.5934 -1.9111 -5.5984 38 1 2.0774 -1.3966 -6.3765 39 1 3.2052 0.6432 -7.2235 40 1 4.7209 0.1282 -6.4453 41 1 3.3261 0.0997 -9.8327 42 1 4.7303 -4.6772 -9.7627 43 1 5.9011 -3.7683 -10.7483 44 1 6.2680 -4.1382 -9.0463 45 1 1.9719 -2.6493 -4.5670 46 1 0.4251 -2.1673 -3.8247 47 1 3.0123 -2.9011 -2.3775 48 1 1.4817 -3.8104 -2.3623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725330689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:30 Heat of formation + Delta-G solvation = 20.417752 kcal Electronic energy + Delta-G solvation = -29142.522736 eV Core-core repulsion = 25041.935655 eV Total energy + Delta-G solvation = -4100.587081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.50617 -41.46585 -39.68072 -37.10655 -35.89710 -35.70618 -34.34364 -33.86873 -32.72399 -31.78221 -29.94823 -29.19976 -28.05795 -26.55159 -25.61129 -24.72225 -23.48260 -23.25259 -21.62755 -21.14027 -20.03207 -19.28521 -18.51812 -17.96453 -17.79711 -17.56954 -16.97597 -16.84992 -16.54553 -16.04597 -15.97890 -15.67515 -15.29671 -15.12804 -15.04092 -14.66106 -14.29227 -14.11908 -13.98189 -13.79218 -13.62783 -13.49082 -13.37301 -13.03662 -12.83677 -12.79717 -12.63101 -12.42963 -12.36910 -12.17048 -11.94011 -11.81918 -11.78249 -11.62931 -11.54142 -11.25137 -11.14159 -10.92046 -10.79636 -10.05778 -9.56359 -8.99643 -7.91492 -5.20013 0.81999 1.41621 1.47689 1.49628 1.52723 1.56784 1.57962 1.87961 2.57441 2.81182 3.13733 3.41841 3.44830 3.62283 3.78271 3.94826 3.98397 4.03487 4.10625 4.17411 4.20440 4.32726 4.34416 4.35371 4.39992 4.43092 4.52833 4.59211 4.62856 4.65105 4.67445 4.82533 4.84261 4.87607 4.99028 5.04088 5.11420 5.18704 5.25852 5.30648 5.35173 5.52624 5.63773 5.78526 6.27167 6.30079 6.33817 7.08918 7.35037 7.36308 8.12314 8.37000 9.32053 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.001994 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.634537 B =14036.698486 C =14292.718252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.175 3.825 3 H 0.058 0.942 4 N -0.733 5.733 5 C -0.238 4.238 6 H 0.077 0.923 7 C -0.079 4.079 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.287 1.287 11 H -0.297 1.297 12 H -0.269 1.269 13 C 0.090 3.910 14 H 0.037 0.963 15 C 0.093 3.907 16 N -0.616 5.616 17 C 0.514 3.486 18 O -0.579 6.579 19 C -0.121 4.121 20 C -0.008 4.008 21 C -0.003 4.003 22 C -0.025 4.025 23 N -0.311 5.311 24 N -0.163 5.163 25 C 0.095 3.905 26 N -0.304 5.304 27 C 0.077 3.923 28 C 0.036 3.964 29 O -0.383 6.383 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.223 0.777 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.124 0.876 46 H 0.094 0.906 47 H 0.045 0.955 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -3.943 -30.689 30.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 H 0.076 0.924 4 N -0.373 5.373 5 C -0.370 4.370 6 H 0.095 0.905 7 C -0.271 4.271 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.194 1.194 13 C 0.031 3.969 14 H 0.056 0.944 15 C -0.031 4.031 16 N -0.349 5.349 17 C 0.305 3.695 18 O -0.459 6.459 19 C -0.161 4.161 20 C -0.047 4.047 21 C -0.165 4.165 22 C -0.206 4.206 23 N -0.153 5.153 24 N -0.064 5.064 25 C -0.043 4.043 26 N -0.148 5.148 27 C -0.045 4.045 28 C -0.041 4.041 29 O -0.302 6.302 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.239 0.761 42 H 0.124 0.876 43 H 0.135 0.865 44 H 0.131 0.869 45 H 0.142 0.858 46 H 0.113 0.887 47 H 0.064 0.936 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.155 -4.482 -30.846 31.171 hybrid contribution 0.200 0.731 1.402 1.594 sum 0.355 -3.751 -29.444 29.684 Atomic orbital electron populations 1.22207 0.96839 1.01160 1.00504 1.20441 0.93936 0.94492 0.84531 0.92438 1.42533 1.78296 1.10459 1.05988 1.19659 1.34805 0.94219 0.88314 0.90509 1.25567 1.03113 0.96934 1.01470 1.69841 1.52687 1.10234 1.29282 0.85145 0.76829 0.78035 0.79795 1.21462 1.22354 1.19412 1.22554 0.95865 0.83867 0.94614 0.94446 1.22200 1.02227 0.95120 0.83551 1.48297 1.54816 1.13613 1.18215 1.21233 0.76212 0.87665 0.84435 1.90692 1.54379 1.19804 1.80992 1.21599 1.03352 0.98834 0.92281 1.19553 1.00826 0.95407 0.88958 1.23255 1.02207 0.93904 0.97180 1.25162 1.04608 1.00247 0.90610 1.74039 1.13688 1.02276 1.25256 1.48382 1.39853 1.18224 0.99977 1.22517 0.99446 0.78210 1.04103 1.73971 1.19992 1.14559 1.06269 1.22661 1.02065 0.80101 0.99666 1.23212 0.99398 0.95960 0.85531 1.88052 1.67955 1.25653 1.48504 0.93522 0.91042 0.94490 0.79316 0.94169 0.88970 0.89408 0.87593 0.86341 0.87881 0.90720 0.76055 0.87641 0.86523 0.86870 0.85805 0.88736 0.93633 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 9.06 71.98 0.65 -4.67 16 2 C 0.17 7.09 2.77 44.99 0.12 7.21 16 3 H 0.06 2.33 8.08 -2.39 -0.02 2.31 16 4 N -0.73 -38.22 5.10 -322.95 -1.65 -39.87 16 5 C -0.24 -13.51 9.93 84.03 0.83 -12.68 16 6 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 7 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 8 N -0.97 -60.79 13.06 21.65 0.28 -60.51 16 9 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 C 0.09 3.11 2.61 30.69 0.08 3.19 16 14 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 15 C 0.09 2.58 5.82 86.36 0.50 3.09 16 16 N -0.62 -14.17 3.02 -817.36 -2.47 -16.63 16 17 C 0.51 11.98 7.71 87.66 0.68 12.66 16 18 O -0.58 -17.97 15.45 -3.05 -0.05 -18.02 16 19 C -0.12 -1.84 4.05 29.85 0.12 -1.72 16 20 C -0.01 -0.12 5.10 29.85 0.15 0.03 16 21 C 0.00 -0.06 6.61 42.97 0.28 0.23 16 22 C -0.02 -0.38 12.15 85.11 1.03 0.65 16 23 N -0.31 -5.51 12.05 -56.87 -0.69 -6.19 16 24 N -0.16 -2.61 4.35 -206.57 -0.90 -3.50 16 25 C 0.10 0.59 11.57 127.77 1.48 2.06 16 26 N -0.30 -5.69 12.04 -47.25 -0.57 -6.26 16 27 C 0.08 1.27 6.54 86.36 0.56 1.84 16 28 C 0.04 0.81 6.98 72.08 0.50 1.32 16 29 O -0.38 -12.69 9.24 -148.98 -1.38 -14.06 16 30 H 0.05 1.77 7.56 -2.39 -0.02 1.76 16 31 H 0.07 2.04 6.41 -2.39 -0.02 2.02 16 32 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.37 21.35 7.58 -92.70 -0.70 20.65 16 34 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.09 2.35 6.26 -2.39 -0.01 2.33 16 36 H 0.09 2.68 7.08 -2.39 -0.02 2.67 16 37 H 0.11 1.52 7.66 -2.39 -0.02 1.51 16 38 H 0.12 1.26 8.02 -2.38 -0.02 1.24 16 39 H 0.10 1.48 8.09 -2.38 -0.02 1.46 16 40 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 41 H 0.22 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 45 H 0.12 1.24 6.05 -2.39 -0.01 1.23 16 46 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 48 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -80.10 391.83 2.36 -77.74 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.27 Total: 29.12 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 7.47 Total: 9.04 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -5.99 Total: -132.96 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -1.42 Total: -32.08 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -80.10 2.36 -77.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725330689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.156 kcal (2) G-P(sol) polarization free energy of solvation -80.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds