Wall clock time and date at job start Tue Mar 31 2020 20:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46996 * 2 1 4 4 C 1.52999 * 109.47179 * 240.00373 * 2 1 3 5 5 N 1.46499 * 109.47170 * 184.99994 * 4 2 1 6 6 C 1.46501 * 119.99881 * 269.99940 * 5 4 2 7 7 C 1.34771 * 120.00168 * 89.99656 * 5 4 2 8 8 O 1.21290 * 120.00080 * 0.02562 * 7 5 4 9 9 C 1.50699 * 120.00164 * 180.02562 * 7 5 4 10 10 C 1.53001 * 109.47320 * 180.02562 * 9 7 5 11 11 N 1.46499 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.34954 * 126.03713 * 124.99785 * 11 10 9 13 13 C 1.35315 * 107.74451 * 180.02562 * 12 11 10 14 14 C 1.39867 * 107.92134 * 0.02562 * 13 12 11 15 15 N 1.30834 * 108.20347 * 359.97438 * 14 13 12 16 16 N 1.46893 * 109.47020 * 120.00006 * 2 1 3 17 17 C 1.46897 * 111.00274 * 275.00203 * 16 2 1 18 18 C 1.50698 * 109.47309 * 180.02562 * 17 16 2 19 19 O 1.21286 * 120.00131 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99830 * 179.97438 * 18 17 16 21 21 C 1.37093 * 119.99874 * 179.97438 * 20 18 17 22 22 H 1.08007 * 120.00215 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00379 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99682 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00443 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47065 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46974 * 120.00345 * 25 23 21 28 28 H 1.48498 * 109.47370 * 239.99823 * 25 23 21 29 29 H 1.09009 * 109.46858 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47516 * 299.99696 * 1 2 3 31 31 H 1.08997 * 109.47057 * 60.00177 * 1 2 3 32 32 H 1.08999 * 109.47285 * 64.99607 * 4 2 1 33 33 H 1.09004 * 109.46661 * 304.99646 * 4 2 1 34 34 H 1.08997 * 109.46930 * 269.99887 * 6 5 4 35 35 H 1.09001 * 109.46708 * 29.99405 * 6 5 4 36 36 H 1.08994 * 109.47149 * 149.99847 * 6 5 4 37 37 H 1.09002 * 109.47108 * 59.99714 * 9 7 5 38 38 H 1.08998 * 109.46979 * 300.00142 * 9 7 5 39 39 H 1.08993 * 109.47166 * 59.99678 * 10 9 7 40 40 H 1.08999 * 109.46588 * 299.99599 * 10 9 7 41 41 H 1.08001 * 126.12517 * 359.75938 * 12 11 10 42 42 H 1.07997 * 126.03615 * 179.97438 * 13 12 11 43 43 H 1.08000 * 125.89932 * 180.02562 * 14 13 12 44 44 H 1.00905 * 110.99903 * 151.05076 * 16 2 1 45 45 H 1.09004 * 109.46763 * 300.00254 * 17 16 2 46 46 H 1.08999 * 109.47189 * 59.99489 * 17 16 2 47 47 H 0.96993 * 120.00097 * 0.02562 * 20 18 17 48 48 H 0.96996 * 119.99863 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0758 -1.8985 -0.6116 8 8 3.3851 -2.7767 -0.1396 9 6 5.5777 -2.0064 -0.5508 10 6 5.9675 -3.3088 0.1512 11 7 7.4275 -3.4133 0.2108 12 6 8.1656 -3.5955 1.3259 13 6 9.4667 -3.6377 0.9569 14 6 9.5260 -3.4751 -0.4310 15 7 8.3042 -3.3407 -0.8793 16 7 2.0197 -0.6925 1.1994 17 6 2.0824 0.2225 2.3469 18 6 2.5884 -0.5216 3.5557 19 8 2.8696 -1.6983 3.4697 20 7 2.7295 0.1208 4.7321 21 6 3.1894 -0.5563 5.8320 22 1 3.4390 -1.6043 5.7556 23 6 3.3343 0.1057 7.0450 24 7 3.0301 1.3808 7.1381 25 14 3.9616 -0.8166 8.5433 26 1 4.2311 -2.2303 8.1774 27 1 5.2149 -0.1830 9.0258 28 1 2.9378 -0.7696 9.6180 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7198 -1.2951 34 1 4.5425 0.0095 -2.8073 35 1 3.8089 1.1867 -1.6918 36 1 5.2722 0.2954 -1.2092 37 1 5.9806 -1.1593 0.0044 38 1 5.9834 -2.0038 -1.5624 39 1 5.5646 -4.1556 -0.4043 40 1 5.5618 -3.3117 1.1628 41 1 7.7859 -3.6867 2.3329 42 1 10.3104 -3.7723 1.6175 43 1 10.4250 -3.4634 -1.0294 44 1 2.9174 -1.1204 1.0287 45 1 2.7588 1.0462 2.1182 46 1 1.0870 0.6163 2.5524 47 1 2.5050 1.0619 4.8008 48 1 3.1310 1.8429 7.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725475736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:50 Heat of formation + Delta-G solvation = 18.918327 kcal Electronic energy + Delta-G solvation = -29747.290500 eV Core-core repulsion = 25646.638399 eV Total energy + Delta-G solvation = -4100.652101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19042 -40.34025 -38.24744 -36.81806 -35.03957 -34.33966 -33.84199 -31.38643 -31.00848 -30.46155 -29.62084 -27.64645 -26.40019 -26.23466 -24.26318 -23.76384 -21.14774 -20.82993 -20.35246 -19.42105 -19.07790 -17.90587 -17.72152 -16.77720 -16.54552 -16.44741 -15.68079 -15.37912 -15.14304 -14.79268 -14.43117 -14.32287 -14.07525 -13.82635 -13.73400 -13.43839 -13.22562 -12.92184 -12.91307 -12.71355 -12.63171 -12.45900 -12.32868 -12.00141 -11.83680 -11.66955 -11.51509 -11.51022 -11.33981 -11.11042 -10.87231 -10.71283 -10.33893 -10.21141 -9.92443 -9.49974 -9.48561 -8.85194 -8.65479 -8.37123 -7.97225 -7.91069 -6.40318 -3.80811 1.84867 2.35507 2.49739 2.80095 2.85779 3.16693 3.27086 3.34370 3.93907 4.11569 4.28064 4.38766 4.41887 4.70627 4.77535 4.83828 4.89699 4.93882 5.04470 5.12707 5.18758 5.25750 5.27481 5.31260 5.33885 5.40762 5.45148 5.57595 5.67929 5.74703 5.75284 5.77896 5.82744 5.97310 6.01882 6.04322 6.20026 6.31219 6.42674 6.58994 6.94587 7.10496 7.35543 7.56570 7.64318 7.80945 8.04038 8.08952 8.64091 9.20073 9.56755 10.09079 10.77725 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007109 B = 0.003889 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3937.629560 B = 7198.264165 C =10497.193498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.066 3.934 3 H 0.039 0.961 4 C 0.113 3.887 5 N -0.624 5.624 6 C 0.076 3.924 7 C 0.510 3.490 8 O -0.504 6.504 9 C -0.149 4.149 10 C 0.147 3.853 11 N -0.370 5.370 12 C 0.063 3.937 13 C -0.281 4.281 14 C 0.042 3.958 15 N -0.303 5.303 16 N -0.657 5.657 17 C 0.049 3.951 18 C 0.441 3.559 19 O -0.576 6.576 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.177 0.823 42 H 0.146 0.854 43 H 0.180 0.820 44 H 0.352 0.648 45 H 0.036 0.964 46 H 0.084 0.916 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -0.102 -18.966 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 H 0.057 0.943 4 C -0.010 4.010 5 N -0.359 5.359 6 C -0.067 4.067 7 C 0.297 3.703 8 O -0.378 6.378 9 C -0.190 4.190 10 C 0.025 3.975 11 N -0.152 5.152 12 C -0.084 4.084 13 C -0.310 4.310 14 C -0.144 4.144 15 N -0.125 5.125 16 N -0.296 5.296 17 C -0.084 4.084 18 C 0.226 3.774 19 O -0.460 6.460 20 N -0.204 5.204 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.131 0.869 41 H 0.194 0.806 42 H 0.164 0.836 43 H 0.197 0.803 44 H 0.176 0.824 45 H 0.054 0.946 46 H 0.102 0.898 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.248 -1.356 -19.478 19.981 hybrid contribution 1.480 0.986 1.452 2.296 sum 5.728 -0.370 -18.026 18.917 Atomic orbital electron populations 1.21745 0.94003 1.02739 1.01148 1.21931 0.96444 0.95665 0.90487 0.94290 1.21769 0.78812 1.03120 0.97296 1.47905 1.07104 1.21532 1.59407 1.21842 0.95603 0.90651 0.98634 1.20442 0.90172 0.81821 0.77818 1.90864 1.64449 1.38407 1.44052 1.21886 0.93153 0.99716 1.04197 1.21502 0.73586 0.97908 1.04455 1.48771 1.06656 1.55247 1.04543 1.22753 0.92107 1.00287 0.93220 1.21510 0.96529 1.17212 0.95772 1.23847 0.95694 1.00019 0.94850 1.77259 1.00097 1.24670 1.10497 1.60190 1.35989 1.31166 1.02222 1.21741 1.00978 0.93857 0.91813 1.19839 0.84846 0.88252 0.84429 1.90540 1.54797 1.15963 1.84664 1.41874 1.58101 1.12383 1.07993 1.19744 1.39666 0.96410 0.86822 0.87933 1.25247 0.97793 0.95776 0.99179 1.69624 1.48958 1.08882 1.27011 0.85817 0.78224 0.79624 0.80794 1.19228 1.20803 1.20741 0.91616 0.92270 0.92876 0.89936 0.88721 0.92246 0.90856 0.90930 0.88375 0.87637 0.88824 0.86854 0.80624 0.83615 0.80271 0.82399 0.94610 0.89758 0.77580 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.41 37.16 0.35 -1.25 16 2 C 0.07 0.85 2.95 -67.72 -0.20 0.65 16 3 H 0.04 0.47 7.80 -51.93 -0.40 0.06 16 4 C 0.11 1.23 5.20 -4.04 -0.02 1.21 16 5 N -0.62 -6.79 2.66 -181.57 -0.48 -7.27 16 6 C 0.08 0.56 10.24 59.85 0.61 1.17 16 7 C 0.51 6.80 6.04 -10.99 -0.07 6.73 16 8 O -0.50 -8.76 14.15 5.55 0.08 -8.68 16 9 C -0.15 -1.67 4.44 -27.88 -0.12 -1.79 16 10 C 0.15 1.83 5.80 -4.04 -0.02 1.81 16 11 N -0.37 -4.72 3.68 -61.37 -0.23 -4.94 16 12 C 0.06 0.74 11.45 -17.22 -0.20 0.55 16 13 C -0.28 -3.04 10.80 -40.01 -0.43 -3.47 16 14 C 0.04 0.46 12.03 -17.37 -0.21 0.25 16 15 N -0.30 -3.93 12.42 30.62 0.38 -3.55 16 16 N -0.66 -11.70 5.82 -108.00 -0.63 -12.33 16 17 C 0.05 0.92 5.96 -4.98 -0.03 0.89 16 18 C 0.44 10.81 7.82 -10.98 -0.09 10.72 16 19 O -0.58 -16.19 15.78 5.55 0.09 -16.10 16 20 N -0.57 -14.63 5.29 -10.96 -0.06 -14.69 16 21 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 22 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 25 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 29 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 33 H 0.09 1.21 7.42 -51.93 -0.39 0.83 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 36 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 37 H 0.10 1.08 7.40 -51.93 -0.38 0.69 16 38 H 0.11 1.05 8.11 -51.93 -0.42 0.63 16 39 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.11 1.55 8.03 -51.93 -0.42 1.13 16 41 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.35 6.65 4.17 -39.29 -0.16 6.49 16 45 H 0.04 0.61 8.06 -51.93 -0.42 0.20 16 46 H 0.08 1.48 7.44 -51.93 -0.39 1.09 16 47 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 399.56 15.07 6.02 6.02 Total: -1.00 -35.63 399.56 -7.12 -42.75 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -7.33 Total: 17.25 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.67 Total: 9.43 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -0.29 Total: -66.81 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: 0.17 Total: -24.79 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.63 -7.12 -42.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725475736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.671 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds