Wall clock time and date at job start Tue Mar 31 2020 20:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47302 * 2 1 4 4 C 1.53002 * 109.46891 * 120.00389 * 2 1 3 5 5 N 1.46501 * 109.47060 * 176.69659 * 4 2 1 6 6 C 1.46501 * 119.99886 * 83.69600 * 5 4 2 7 7 C 1.34773 * 120.00224 * 263.69389 * 5 4 2 8 8 O 1.21282 * 119.99696 * 0.02562 * 7 5 4 9 9 C 1.50700 * 120.00245 * 179.97438 * 7 5 4 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 5 11 11 N 1.46501 * 109.46899 * 180.02562 * 10 9 7 12 12 C 1.34953 * 126.03824 * 124.99763 * 11 10 9 13 13 C 1.35315 * 107.74700 * 179.97438 * 12 11 10 14 14 C 1.39866 * 107.91830 * 0.02562 * 13 12 11 15 15 N 1.30840 * 108.20507 * 359.74286 * 14 13 12 16 16 N 1.46899 * 109.46922 * 239.99569 * 2 1 3 17 17 C 1.46905 * 111.00099 * 78.69713 * 16 2 1 18 18 C 1.50692 * 109.47366 * 180.02562 * 17 16 2 19 19 O 1.21289 * 120.00281 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99910 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99845 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00348 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99720 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00576 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99872 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47292 * 89.99905 * 25 23 21 27 27 H 1.48504 * 109.46894 * 209.99952 * 25 23 21 28 28 H 1.48494 * 109.46969 * 329.99586 * 25 23 21 29 29 H 1.08997 * 109.47302 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46672 * 300.00055 * 1 2 3 31 31 H 1.09001 * 109.46985 * 59.99749 * 1 2 3 32 32 H 1.08996 * 109.47237 * 56.69447 * 4 2 1 33 33 H 1.09004 * 109.46813 * 296.69264 * 4 2 1 34 34 H 1.09002 * 109.47165 * 265.09638 * 6 5 4 35 35 H 1.08999 * 109.47545 * 25.10190 * 6 5 4 36 36 H 1.09005 * 109.47232 * 145.10494 * 6 5 4 37 37 H 1.09000 * 109.47012 * 60.00337 * 9 7 5 38 38 H 1.08999 * 109.47368 * 299.99818 * 9 7 5 39 39 H 1.09004 * 109.47390 * 299.99783 * 10 9 7 40 40 H 1.09000 * 109.47241 * 60.00186 * 10 9 7 41 41 H 1.08007 * 126.12115 * 359.95815 * 12 11 10 42 42 H 1.07999 * 126.03779 * 179.97438 * 13 12 11 43 43 H 1.08004 * 125.89924 * 179.97438 * 14 13 12 44 44 H 1.00905 * 111.00238 * 202.64589 * 16 2 1 45 45 H 1.09003 * 109.46521 * 300.00136 * 17 16 2 46 46 H 1.08998 * 109.46994 * 59.99556 * 17 16 2 47 47 H 0.97000 * 120.00070 * 359.97438 * 20 18 17 48 48 H 0.96995 * 120.00712 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5028 -0.7907 1.2101 6 6 4.3027 0.3444 1.6772 7 6 4.1128 -1.8986 0.7445 8 8 3.4506 -2.8381 0.3575 9 6 5.6175 -1.9697 0.7038 10 6 6.0489 -3.3236 0.1364 11 7 7.5117 -3.3930 0.0974 12 6 8.2765 -4.3514 0.6611 13 6 9.5703 -4.0542 0.3987 14 6 9.5971 -2.8734 -0.3504 15 7 8.3635 -2.4789 -0.5361 16 7 2.0196 -0.6926 -1.1994 17 6 1.9417 0.1790 -2.3793 18 6 2.4506 -0.5642 -3.5874 19 8 2.8404 -1.7074 -3.4764 20 7 2.4736 0.0417 -4.7911 21 6 2.9371 -0.6343 -5.8901 22 1 3.2841 -1.6522 -5.7912 23 6 2.9602 -0.0097 -7.1311 24 7 2.5384 1.2290 -7.2514 25 14 3.5925 -0.9306 -8.6284 26 1 2.4659 -1.6416 -9.2844 27 1 4.1935 0.0334 -9.5850 28 1 4.6206 -1.9153 -8.2062 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6291 -1.7305 1.2793 33 1 1.7258 -0.1744 2.1382 34 1 4.5680 0.9754 0.8290 35 1 3.7243 0.9254 2.3955 36 1 5.2110 -0.0232 2.1547 37 1 6.0141 -1.8551 1.7126 38 1 6.0020 -1.1712 0.0692 39 1 5.6645 -4.1225 0.7706 40 1 5.6523 -3.4379 -0.8724 41 1 7.9197 -5.2030 1.2214 42 1 10.4302 -4.6270 0.7131 43 1 10.4830 -2.3753 -0.7160 44 1 2.9598 -1.0323 -1.0624 45 1 0.9056 0.4746 -2.5448 46 1 2.5512 1.0676 -2.2155 47 1 2.1622 0.9561 -4.8798 48 1 2.5549 1.6651 -8.1176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725475740.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:53 Heat of formation + Delta-G solvation = 17.160195 kcal Electronic energy + Delta-G solvation = -29536.675537 eV Core-core repulsion = 25435.947197 eV Total energy + Delta-G solvation = -4100.728340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22100 -40.25281 -38.24470 -36.85759 -34.99736 -34.37542 -33.80402 -31.35521 -30.99138 -30.47188 -29.64529 -27.64544 -26.44682 -26.20321 -24.27992 -23.72736 -21.19331 -20.84866 -20.34054 -19.38712 -19.06975 -17.86197 -17.75538 -16.75843 -16.52119 -16.35250 -15.90540 -15.28547 -15.13991 -14.72470 -14.44711 -14.38834 -14.09377 -13.79971 -13.72865 -13.36162 -13.26865 -12.99950 -12.91456 -12.75872 -12.66787 -12.40268 -12.36279 -11.95582 -11.82942 -11.67425 -11.52852 -11.49195 -11.34938 -11.05812 -10.82968 -10.68476 -10.34615 -10.15980 -9.92290 -9.51626 -9.44530 -8.85987 -8.69569 -8.34209 -7.95641 -7.88368 -6.35879 -3.76161 1.81868 2.32464 2.51208 2.77418 2.86812 3.22359 3.30199 3.37033 3.98189 4.13582 4.26655 4.38487 4.42225 4.64612 4.74201 4.77095 4.85568 4.91187 5.05873 5.08693 5.18872 5.25928 5.29451 5.32775 5.34476 5.42064 5.43983 5.58298 5.67386 5.70456 5.73956 5.76604 5.84243 5.90514 6.04251 6.05507 6.21221 6.34436 6.42443 6.56132 6.90386 7.12085 7.35232 7.61090 7.63745 7.78338 8.04344 8.13140 8.68527 9.24585 9.61091 10.13581 10.82136 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007357 B = 0.003568 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3805.118939 B = 7846.452968 C =10941.894822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 H 0.037 0.963 4 C 0.114 3.886 5 N -0.623 5.623 6 C 0.077 3.923 7 C 0.513 3.487 8 O -0.509 6.509 9 C -0.149 4.149 10 C 0.147 3.853 11 N -0.369 5.369 12 C 0.053 3.947 13 C -0.279 4.279 14 C 0.041 3.959 15 N -0.291 5.291 16 N -0.656 5.656 17 C 0.049 3.951 18 C 0.441 3.559 19 O -0.577 6.577 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.172 0.828 42 H 0.145 0.855 43 H 0.181 0.819 44 H 0.349 0.651 45 H 0.085 0.915 46 H 0.038 0.962 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.639 -1.142 22.902 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 H 0.055 0.945 4 C -0.008 4.008 5 N -0.358 5.358 6 C -0.067 4.067 7 C 0.300 3.700 8 O -0.383 6.383 9 C -0.190 4.190 10 C 0.025 3.975 11 N -0.152 5.152 12 C -0.093 4.093 13 C -0.309 4.309 14 C -0.145 4.145 15 N -0.112 5.112 16 N -0.291 5.291 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.460 6.460 20 N -0.203 5.203 21 C -0.426 4.426 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.546 5.546 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.190 0.810 42 H 0.163 0.837 43 H 0.198 0.802 44 H 0.171 0.829 45 H 0.104 0.896 46 H 0.056 0.944 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.039 -1.749 21.957 22.596 hybrid contribution 1.411 0.439 -0.377 1.526 sum 6.451 -1.310 21.580 22.562 Atomic orbital electron populations 1.21754 0.93961 1.02801 1.01256 1.21910 0.96365 0.95521 0.90709 0.94475 1.21753 0.78648 1.03391 0.97025 1.47867 1.07079 1.16247 1.64606 1.21832 0.96032 0.88916 0.99878 1.20381 0.89871 0.82438 0.77295 1.90834 1.66438 1.36039 1.44998 1.21883 0.93072 1.00165 1.03831 1.21492 0.73468 0.97690 1.04835 1.48809 1.06633 1.19088 1.40626 1.22596 0.91763 0.95287 0.99683 1.21495 0.96610 1.01783 1.11006 1.23909 0.95578 0.96293 0.98770 1.77427 1.00846 1.14724 1.18251 1.60118 1.31187 1.37003 1.00814 1.21727 1.01407 0.93956 0.91236 1.19831 0.85124 0.88122 0.84293 1.90547 1.52054 1.18228 1.85171 1.41856 1.56732 1.15320 1.06402 1.19703 1.38394 0.99129 0.85389 0.87998 1.25237 0.97679 0.95930 0.99114 1.69610 1.47558 1.11667 1.25730 0.85874 0.79050 0.78898 0.80581 1.20408 1.20950 1.19438 0.91554 0.92781 0.92232 0.88403 0.90201 0.92401 0.90658 0.91122 0.88651 0.87367 0.87792 0.87957 0.81050 0.83706 0.80167 0.82928 0.89649 0.94444 0.77570 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.34 37.16 0.35 -1.27 16 2 C 0.07 0.86 2.92 -67.71 -0.20 0.66 16 3 H 0.04 0.45 7.91 -51.93 -0.41 0.04 16 4 C 0.11 1.25 5.22 -4.04 -0.02 1.22 16 5 N -0.62 -6.69 2.52 -181.57 -0.46 -7.14 16 6 C 0.08 0.56 10.19 59.85 0.61 1.17 16 7 C 0.51 6.69 6.11 -10.99 -0.07 6.62 16 8 O -0.51 -8.67 14.78 5.56 0.08 -8.59 16 9 C -0.15 -1.61 4.51 -27.88 -0.13 -1.74 16 10 C 0.15 1.75 5.80 -4.04 -0.02 1.72 16 11 N -0.37 -4.55 3.68 -61.36 -0.23 -4.77 16 12 C 0.05 0.53 11.45 -17.22 -0.20 0.33 16 13 C -0.28 -2.74 10.80 -40.01 -0.43 -3.17 16 14 C 0.04 0.46 12.03 -17.36 -0.21 0.25 16 15 N -0.29 -4.10 12.42 30.63 0.38 -3.72 16 16 N -0.66 -11.79 5.91 -107.99 -0.64 -12.43 16 17 C 0.05 0.95 5.97 -4.98 -0.03 0.92 16 18 C 0.44 11.13 7.82 -10.99 -0.09 11.04 16 19 O -0.58 -16.77 15.78 5.55 0.09 -16.68 16 20 N -0.57 -15.06 5.29 -10.97 -0.06 -15.12 16 21 C -0.30 -8.63 9.68 -14.93 -0.14 -8.78 16 22 H 0.10 3.13 7.16 -52.49 -0.38 2.75 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -25.32 13.05 55.50 0.72 -24.59 16 25 Si 0.93 21.85 29.55 -169.99 -5.02 16.83 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.73 7.09 -51.93 -0.37 0.37 16 32 H 0.10 1.26 7.24 -51.93 -0.38 0.88 16 33 H 0.08 0.61 7.96 -51.93 -0.41 0.20 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.40 7.91 -51.93 -0.41 -0.01 16 36 H 0.07 0.41 6.64 -51.93 -0.34 0.07 16 37 H 0.10 0.80 7.41 -51.93 -0.38 0.41 16 38 H 0.11 1.29 8.11 -51.93 -0.42 0.87 16 39 H 0.10 1.03 8.03 -51.93 -0.42 0.61 16 40 H 0.10 1.53 8.10 -51.93 -0.42 1.11 16 41 H 0.17 1.10 8.06 -52.48 -0.42 0.67 16 42 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.18 1.49 8.06 -52.48 -0.42 1.07 16 44 H 0.35 6.77 5.17 -39.29 -0.20 6.57 16 45 H 0.09 1.51 7.05 -51.93 -0.37 1.15 16 46 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 47 H 0.39 9.92 7.90 -40.82 -0.32 9.59 16 48 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 400.28 15.07 6.03 6.03 Total: -1.00 -37.19 400.28 -7.09 -44.28 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -7.32 Total: 16.42 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.67 Total: 9.49 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -0.27 Total: -67.77 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.17 Total: -25.27 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.19 -7.09 -44.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725475740.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.441 kcal (2) G-P(sol) polarization free energy of solvation -37.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds