Wall clock time and date at job start Tue Mar 31 2020 20:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47302 * 2 1 4 4 C 1.53002 * 109.46891 * 120.00389 * 2 1 3 5 5 N 1.46501 * 109.47060 * 176.69659 * 4 2 1 6 6 C 1.46501 * 119.99886 * 83.69600 * 5 4 2 7 7 C 1.34773 * 120.00224 * 263.69389 * 5 4 2 8 8 O 1.21282 * 119.99696 * 0.02562 * 7 5 4 9 9 C 1.50700 * 120.00245 * 179.97438 * 7 5 4 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 5 11 11 N 1.46501 * 109.46899 * 180.02562 * 10 9 7 12 12 C 1.34953 * 126.03824 * 124.99763 * 11 10 9 13 13 C 1.35315 * 107.74700 * 179.97438 * 12 11 10 14 14 C 1.39866 * 107.91830 * 0.02562 * 13 12 11 15 15 N 1.30840 * 108.20507 * 359.74286 * 14 13 12 16 16 N 1.46899 * 109.46922 * 239.99569 * 2 1 3 17 17 C 1.46905 * 111.00099 * 78.69713 * 16 2 1 18 18 C 1.50692 * 109.47366 * 180.02562 * 17 16 2 19 19 O 1.21289 * 120.00281 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99910 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99845 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00348 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99720 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00576 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99872 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47292 * 89.99905 * 25 23 21 27 27 H 1.48504 * 109.46894 * 209.99952 * 25 23 21 28 28 H 1.48494 * 109.46969 * 329.99586 * 25 23 21 29 29 H 1.08997 * 109.47302 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46672 * 300.00055 * 1 2 3 31 31 H 1.09001 * 109.46985 * 59.99749 * 1 2 3 32 32 H 1.08996 * 109.47237 * 56.69447 * 4 2 1 33 33 H 1.09004 * 109.46813 * 296.69264 * 4 2 1 34 34 H 1.09002 * 109.47165 * 265.09638 * 6 5 4 35 35 H 1.08999 * 109.47545 * 25.10190 * 6 5 4 36 36 H 1.09005 * 109.47232 * 145.10494 * 6 5 4 37 37 H 1.09000 * 109.47012 * 60.00337 * 9 7 5 38 38 H 1.08999 * 109.47368 * 299.99818 * 9 7 5 39 39 H 1.09004 * 109.47390 * 299.99783 * 10 9 7 40 40 H 1.09000 * 109.47241 * 60.00186 * 10 9 7 41 41 H 1.08007 * 126.12115 * 359.95815 * 12 11 10 42 42 H 1.07999 * 126.03779 * 179.97438 * 13 12 11 43 43 H 1.08004 * 125.89924 * 179.97438 * 14 13 12 44 44 H 1.00905 * 111.00238 * 202.64589 * 16 2 1 45 45 H 1.09003 * 109.46521 * 300.00136 * 17 16 2 46 46 H 1.08998 * 109.46994 * 59.99556 * 17 16 2 47 47 H 0.97000 * 120.00070 * 359.97438 * 20 18 17 48 48 H 0.96995 * 120.00712 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5028 -0.7907 1.2101 6 6 4.3027 0.3444 1.6772 7 6 4.1128 -1.8986 0.7445 8 8 3.4506 -2.8381 0.3575 9 6 5.6175 -1.9697 0.7038 10 6 6.0489 -3.3236 0.1364 11 7 7.5117 -3.3930 0.0974 12 6 8.2765 -4.3514 0.6611 13 6 9.5703 -4.0542 0.3987 14 6 9.5971 -2.8734 -0.3504 15 7 8.3635 -2.4789 -0.5361 16 7 2.0196 -0.6926 -1.1994 17 6 1.9417 0.1790 -2.3793 18 6 2.4506 -0.5642 -3.5874 19 8 2.8404 -1.7074 -3.4764 20 7 2.4736 0.0417 -4.7911 21 6 2.9371 -0.6343 -5.8901 22 1 3.2841 -1.6522 -5.7912 23 6 2.9602 -0.0097 -7.1311 24 7 2.5384 1.2290 -7.2514 25 14 3.5925 -0.9306 -8.6284 26 1 2.4659 -1.6416 -9.2844 27 1 4.1935 0.0334 -9.5850 28 1 4.6206 -1.9153 -8.2062 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6291 -1.7305 1.2793 33 1 1.7258 -0.1744 2.1382 34 1 4.5680 0.9754 0.8290 35 1 3.7243 0.9254 2.3955 36 1 5.2110 -0.0232 2.1547 37 1 6.0141 -1.8551 1.7126 38 1 6.0020 -1.1712 0.0692 39 1 5.6645 -4.1225 0.7706 40 1 5.6523 -3.4379 -0.8724 41 1 7.9197 -5.2030 1.2214 42 1 10.4302 -4.6270 0.7131 43 1 10.4830 -2.3753 -0.7160 44 1 2.9598 -1.0323 -1.0624 45 1 0.9056 0.4746 -2.5448 46 1 2.5512 1.0676 -2.2155 47 1 2.1622 0.9561 -4.8798 48 1 2.5549 1.6651 -8.1176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725475740.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:52 Heat of formation + Delta-G solvation = -11.203098 kcal Electronic energy + Delta-G solvation = -29537.905461 eV Core-core repulsion = 25435.947197 eV Total energy + Delta-G solvation = -4101.958264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06779 -41.23767 -40.16167 -38.06696 -36.21185 -35.81208 -35.29051 -33.34357 -32.34384 -31.40459 -30.50617 -28.44341 -28.04776 -27.17638 -25.88732 -24.88859 -22.00484 -21.78545 -21.33465 -21.17219 -20.18120 -19.93807 -18.65502 -18.10074 -17.50697 -17.37565 -17.14120 -16.77811 -16.52486 -16.17426 -15.91284 -15.59829 -15.39788 -15.11248 -14.90612 -14.51149 -14.30688 -14.07609 -13.88397 -13.70512 -13.58921 -13.54432 -13.48391 -13.37718 -13.16655 -12.94063 -12.88653 -12.65610 -12.48194 -12.45807 -12.39102 -12.15185 -11.96883 -11.55530 -11.54528 -10.95562 -10.42665 -10.40080 -10.05935 -9.72863 -9.52275 -9.31431 -8.50872 -5.99868 0.99560 1.33880 1.37127 1.45797 1.50437 1.53744 1.97926 1.99639 2.04715 2.25794 2.89820 3.15486 3.42296 3.48896 3.51549 3.77392 3.89524 4.05139 4.10560 4.16759 4.22149 4.24415 4.30528 4.38455 4.43968 4.47945 4.51616 4.53023 4.61782 4.70125 4.82562 4.86204 4.89784 4.91156 4.93020 5.07233 5.16994 5.35142 5.36665 5.53585 5.76218 5.87790 6.11727 6.12216 6.24116 6.40314 6.56116 6.79498 7.08314 7.09165 7.50595 8.07437 8.66709 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007357 B = 0.003568 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3805.118939 B = 7846.452968 C =10941.894822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.064 3.936 3 H 0.056 0.944 4 C 0.116 3.884 5 N -0.618 5.618 6 C 0.071 3.929 7 C 0.507 3.493 8 O -0.559 6.559 9 C -0.134 4.134 10 C 0.151 3.849 11 N -0.382 5.382 12 C 0.052 3.948 13 C -0.282 4.282 14 C 0.035 3.965 15 N -0.345 5.345 16 N -0.678 5.678 17 C 0.065 3.935 18 C 0.434 3.566 19 O -0.622 6.622 20 N -0.571 5.571 21 C -0.336 4.336 22 H 0.074 0.926 23 C -0.010 4.010 24 N -0.918 5.918 25 Si 0.992 3.008 26 H -0.269 1.269 27 H -0.266 1.266 28 H -0.277 1.277 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.058 0.942 41 H 0.206 0.794 42 H 0.173 0.827 43 H 0.203 0.797 44 H 0.337 0.663 45 H 0.104 0.896 46 H 0.060 0.940 47 H 0.396 0.604 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.116 0.062 24.711 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.047 4.047 3 H 0.073 0.927 4 C -0.006 4.006 5 N -0.352 5.352 6 C -0.071 4.071 7 C 0.296 3.704 8 O -0.437 6.437 9 C -0.175 4.175 10 C 0.029 3.971 11 N -0.164 5.164 12 C -0.093 4.093 13 C -0.311 4.311 14 C -0.150 4.150 15 N -0.167 5.167 16 N -0.313 5.313 17 C -0.067 4.067 18 C 0.221 3.779 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.092 0.908 23 C -0.210 4.210 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.194 1.194 27 H -0.190 1.190 28 H -0.202 1.202 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.142 0.858 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.144 0.856 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.077 0.923 41 H 0.223 0.777 42 H 0.190 0.810 43 H 0.220 0.780 44 H 0.158 0.842 45 H 0.122 0.878 46 H 0.078 0.922 47 H 0.230 0.770 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.505 -0.467 23.794 24.427 hybrid contribution 1.282 0.080 -0.901 1.569 sum 6.787 -0.387 22.893 23.881 Atomic orbital electron populations 1.21750 0.92881 1.02128 1.02639 1.22123 0.97149 0.96097 0.89295 0.92660 1.21808 0.78642 1.02473 0.97715 1.47972 1.07435 1.16363 1.63393 1.22091 0.96837 0.87872 1.00312 1.20752 0.90544 0.82517 0.76634 1.90808 1.67487 1.38091 1.47341 1.21758 0.91678 0.98985 1.05050 1.21353 0.73808 0.99186 1.02775 1.48836 1.06484 1.19728 1.41389 1.23275 0.91750 0.95332 0.98977 1.21885 0.97513 1.01362 1.10370 1.24450 0.95472 0.96866 0.98219 1.77372 1.02227 1.16741 1.20396 1.60144 1.30697 1.38109 1.02354 1.21574 1.02296 0.93754 0.89107 1.20934 0.83657 0.87856 0.85433 1.90517 1.53768 1.20533 1.86045 1.41903 1.56946 1.15442 1.06581 1.19630 1.40939 0.98758 0.87248 0.90830 1.26024 0.97061 0.96760 1.01168 1.69661 1.47038 1.12330 1.26892 0.84953 0.78499 0.77882 0.77131 1.19434 1.19009 1.20160 0.93271 0.89064 0.93136 0.90859 0.85751 0.93085 0.87671 0.89528 0.85595 0.88696 0.85869 0.92338 0.77687 0.80981 0.77998 0.84214 0.87802 0.92229 0.76967 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.34 71.98 0.67 -2.21 16 2 C 0.06 1.53 2.92 44.92 0.13 1.66 16 3 H 0.06 1.16 7.91 -2.39 -0.02 1.15 16 4 C 0.12 2.32 5.22 86.38 0.45 2.77 16 5 N -0.62 -12.49 2.52 -846.74 -2.14 -14.63 16 6 C 0.07 0.84 10.19 127.77 1.30 2.14 16 7 C 0.51 13.52 6.11 87.66 0.54 14.05 16 8 O -0.56 -20.17 14.78 -3.04 -0.04 -20.22 16 9 C -0.13 -2.97 4.51 29.85 0.13 -2.84 16 10 C 0.15 3.81 5.80 86.38 0.50 4.31 16 11 N -0.38 -9.56 3.68 -348.04 -1.28 -10.84 16 12 C 0.05 0.97 11.45 83.54 0.96 1.93 16 13 C -0.28 -5.10 10.80 21.99 0.24 -4.86 16 14 C 0.04 0.78 12.03 85.23 1.02 1.81 16 15 N -0.35 -10.00 12.42 -57.02 -0.71 -10.70 16 16 N -0.68 -24.61 5.91 -495.58 -2.93 -27.54 16 17 C 0.07 2.50 5.97 85.55 0.51 3.01 16 18 C 0.43 22.70 7.82 87.65 0.69 23.39 16 19 O -0.62 -38.27 15.78 -3.06 -0.05 -38.32 16 20 N -0.57 -31.37 5.29 -307.00 -1.62 -32.99 16 21 C -0.34 -20.28 9.68 84.04 0.81 -19.46 16 22 H 0.07 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 24 N -0.92 -51.16 13.05 21.66 0.28 -50.88 16 25 Si 0.99 44.97 29.55 68.60 2.03 47.00 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 1.16 7.09 -2.39 -0.02 1.14 16 32 H 0.07 1.87 7.24 -2.39 -0.02 1.86 16 33 H 0.12 1.39 7.96 -2.39 -0.02 1.37 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.65 7.91 -2.39 -0.02 0.64 16 36 H 0.09 0.77 6.64 -2.38 -0.02 0.75 16 37 H 0.13 1.94 7.41 -2.39 -0.02 1.93 16 38 H 0.09 2.37 8.11 -2.39 -0.02 2.35 16 39 H 0.12 2.53 8.03 -2.38 -0.02 2.51 16 40 H 0.06 1.97 8.10 -2.39 -0.02 1.95 16 41 H 0.21 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.20 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.34 13.57 5.17 -89.69 -0.46 13.10 16 45 H 0.10 3.60 7.05 -2.39 -0.02 3.58 16 46 H 0.06 2.02 8.07 -2.39 -0.02 2.01 16 47 H 0.40 20.48 7.90 -92.71 -0.73 19.74 16 48 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -85.98 400.28 1.75 -84.23 By element: Atomic # 1 Polarization: 49.50 SS G_CDS: -0.21 Total: 49.28 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 8.42 Total: 25.60 kcal Atomic # 7 Polarization: -139.19 SS G_CDS: -8.39 Total: -147.58 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -0.09 Total: -58.53 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -85.98 1.75 -84.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725475740.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.029 kcal (2) G-P(sol) polarization free energy of solvation -85.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds