Wall clock time and date at job start Tue Mar 31 2020 19:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46690 * 2 1 4 4 C 1.52992 * 109.47167 * 240.00003 * 2 1 3 5 5 N 1.46506 * 109.47110 * 185.00042 * 4 2 1 6 6 C 1.46492 * 119.99800 * 269.99838 * 5 4 2 7 7 C 1.34773 * 119.99968 * 89.99382 * 5 4 2 8 8 O 1.21283 * 120.00360 * 359.73034 * 7 5 4 9 9 C 1.50706 * 120.00081 * 180.02562 * 7 5 4 10 10 C 1.50696 * 109.47259 * 179.72770 * 9 7 5 11 11 C 1.39864 * 125.89922 * 124.71541 * 10 9 7 12 12 C 1.35319 * 107.92185 * 179.86251 * 11 10 9 13 13 N 1.34943 * 107.74323 * 0.39627 * 12 11 10 14 14 C 1.46503 * 126.03648 * 179.75101 * 13 12 11 15 15 N 1.30835 * 125.89759 * 305.02217 * 10 9 7 16 16 N 1.46902 * 109.46971 * 119.99503 * 2 1 3 17 17 C 1.46902 * 111.00097 * 275.00347 * 16 2 1 18 18 C 1.50703 * 109.46959 * 180.02562 * 17 16 2 19 19 O 1.21287 * 119.99655 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99809 * 180.02562 * 18 17 16 21 21 C 1.37093 * 120.00010 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99897 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00128 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99771 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00150 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46879 * 59.99865 * 25 23 21 27 27 H 1.48500 * 109.47492 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47077 * 300.00360 * 25 23 21 29 29 H 1.09006 * 109.46904 * 60.00531 * 1 2 3 30 30 H 1.09006 * 109.47195 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47547 * 300.00249 * 1 2 3 32 32 H 1.08995 * 109.47699 * 64.99648 * 4 2 1 33 33 H 1.09002 * 109.47212 * 304.99818 * 4 2 1 34 34 H 1.09001 * 109.47443 * 269.99328 * 6 5 4 35 35 H 1.08999 * 109.47479 * 30.00306 * 6 5 4 36 36 H 1.09006 * 109.47080 * 149.99714 * 6 5 4 37 37 H 1.09001 * 109.46564 * 299.73030 * 9 7 5 38 38 H 1.08998 * 109.47012 * 59.72084 * 9 7 5 39 39 H 1.08007 * 126.04425 * 359.97438 * 11 10 9 40 40 H 1.08002 * 126.12789 * 180.14519 * 12 11 10 41 41 H 1.08993 * 109.47083 * 269.97381 * 14 13 12 42 42 H 1.08999 * 109.47127 * 29.97196 * 14 13 12 43 43 H 1.09005 * 109.46778 * 149.97106 * 14 13 12 44 44 H 1.00900 * 110.99607 * 38.95394 * 16 2 1 45 45 H 1.08999 * 109.47064 * 299.99937 * 17 16 2 46 46 H 1.09002 * 109.47129 * 60.00077 * 17 16 2 47 47 H 0.97002 * 120.00139 * 359.97438 * 20 18 17 48 48 H 0.97004 * 119.99548 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3343 0.2340 -1.7612 7 6 4.0758 -1.8985 -0.6114 8 8 3.3851 -2.7741 -0.1345 9 6 5.5777 -2.0064 -0.5505 10 6 5.9616 -3.2856 0.1475 11 6 6.7956 -4.2830 -0.3682 12 6 6.8955 -5.2631 0.5594 13 7 6.1440 -4.9030 1.6208 14 6 5.9629 -5.6774 2.8511 15 7 5.5678 -3.6577 1.3385 16 7 2.0197 -0.6924 1.1995 17 6 2.0824 0.2228 2.3469 18 6 2.5884 -0.5213 3.5558 19 8 2.8687 -1.6982 3.4700 20 7 2.7285 0.1208 4.7325 21 6 3.1883 -0.5561 5.8324 22 1 3.4379 -1.6041 5.7560 23 6 3.3332 0.1060 7.0453 24 7 3.0299 1.3813 7.1380 25 14 3.9591 -0.8166 8.5441 26 1 5.3150 -1.3535 8.2642 27 1 4.0233 0.1087 9.7039 28 1 3.0371 -1.9383 8.8556 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2951 34 1 4.5426 0.0092 -2.8072 35 1 3.8091 1.1866 -1.6918 36 1 5.2722 0.2953 -1.2091 37 1 5.9831 -2.0088 -1.5623 38 1 5.9810 -1.1567 0.0004 39 1 7.2765 -4.2719 -1.3353 40 1 7.4701 -6.1727 0.4652 41 1 5.1045 -6.3399 2.7404 42 1 6.8573 -6.2705 3.0420 43 1 5.7923 -4.9980 3.6863 44 1 1.4495 -1.4978 1.4101 45 1 2.7587 1.0463 2.1183 46 1 1.0869 0.6164 2.5525 47 1 2.5039 1.0620 4.8011 48 1 3.1308 1.8434 7.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725481807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:55 Heat of formation + Delta-G solvation = 23.328613 kcal Electronic energy + Delta-G solvation = -30251.214668 eV Core-core repulsion = 26150.753811 eV Total energy + Delta-G solvation = -4100.460857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.90375 -39.42012 -38.10121 -36.51135 -34.67255 -33.71527 -33.53925 -31.21141 -30.83270 -30.10425 -29.38438 -27.28820 -26.11718 -26.07077 -24.83042 -23.74703 -21.01559 -20.83043 -19.94409 -19.09196 -18.52590 -17.73378 -16.81487 -16.60470 -16.10041 -15.68900 -15.28831 -15.10385 -14.96558 -14.50291 -14.37976 -13.94467 -13.73998 -13.63062 -13.39934 -13.16691 -12.91660 -12.85716 -12.60814 -12.40913 -12.35712 -12.12111 -12.09706 -11.97089 -11.86368 -11.71591 -11.46117 -11.37193 -11.16598 -10.92425 -10.79706 -10.36728 -10.09530 -10.09141 -9.35396 -9.27681 -8.88596 -8.42390 -8.28302 -8.12792 -7.81092 -7.67896 -6.29135 -3.68405 2.23562 2.82471 2.96502 3.20478 3.26853 3.30852 3.35822 3.48115 4.10661 4.22929 4.49817 4.69552 4.86604 4.97955 5.01691 5.10357 5.16324 5.23909 5.30175 5.33590 5.36458 5.39631 5.43538 5.45600 5.56080 5.59993 5.68233 5.73781 5.77151 5.82942 5.86615 5.92307 6.02568 6.05082 6.19630 6.22598 6.26393 6.45529 6.79400 6.91136 7.29823 7.50563 7.66840 7.75293 7.97140 8.13409 8.21155 8.77455 8.78260 9.32964 9.70857 10.25323 10.89373 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007948 B = 0.004311 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3521.976011 B = 6493.614222 C = 9237.174863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.073 0.927 4 C 0.133 3.867 5 N -0.614 5.614 6 C 0.082 3.918 7 C 0.528 3.472 8 O -0.494 6.494 9 C -0.053 4.053 10 C 0.071 3.929 11 C -0.272 4.272 12 C 0.039 3.961 13 N -0.375 5.375 14 C 0.103 3.897 15 N -0.225 5.225 16 N -0.645 5.645 17 C 0.053 3.947 18 C 0.443 3.557 19 O -0.562 6.562 20 N -0.573 5.573 21 C -0.291 4.291 22 H 0.100 0.900 23 C 0.019 3.981 24 N -0.907 5.907 25 Si 0.928 3.072 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.142 0.858 40 H 0.167 0.833 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.352 0.648 45 H 0.078 0.922 46 H 0.037 0.963 47 H 0.390 0.610 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 -3.682 -19.538 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.047 4.047 3 H 0.091 0.909 4 C 0.009 3.991 5 N -0.350 5.350 6 C -0.062 4.062 7 C 0.314 3.686 8 O -0.365 6.365 9 C -0.095 4.095 10 C -0.097 4.097 11 C -0.302 4.302 12 C -0.106 4.106 13 N -0.158 5.158 14 C -0.039 4.039 15 N -0.046 5.046 16 N -0.277 5.277 17 C -0.080 4.080 18 C 0.228 3.772 19 O -0.443 6.443 20 N -0.211 5.211 21 C -0.420 4.420 22 H 0.118 0.882 23 C -0.181 4.181 24 N -0.550 5.550 25 Si 0.755 3.245 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.159 0.841 40 H 0.184 0.816 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.173 0.827 45 H 0.096 0.904 46 H 0.054 0.946 47 H 0.222 0.778 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.085 -4.615 -18.136 19.154 hybrid contribution -0.229 0.284 0.453 0.581 sum 3.856 -4.331 -17.683 18.609 Atomic orbital electron populations 1.22479 0.97359 1.02303 1.01984 1.22019 0.92206 0.98056 0.92445 0.90858 1.21373 0.80252 1.01585 0.95869 1.47479 1.05996 1.21366 1.60134 1.21707 0.95791 0.90930 0.97788 1.20005 0.89538 0.81633 0.77469 1.90728 1.64178 1.39354 1.42265 1.19977 0.94282 0.94575 1.00661 1.21564 0.97981 0.96643 0.93490 1.21241 1.10006 0.96589 1.02343 1.22407 0.98595 1.00649 0.88991 1.48667 1.36573 1.16172 1.14352 1.21824 1.02230 0.95339 0.84509 1.77901 1.16356 0.94177 1.16194 1.60089 1.57708 1.08238 1.01716 1.21676 0.99195 0.95702 0.91461 1.19889 0.84795 0.88444 0.84091 1.90608 1.53650 1.15826 1.84259 1.41847 1.58918 1.12344 1.07974 1.19614 1.39363 0.96263 0.86801 0.88227 1.25196 0.98115 0.95762 0.99067 1.69611 1.49565 1.08816 1.26975 0.85967 0.79364 0.78812 0.80331 1.20081 1.21083 1.20072 0.92397 0.92258 0.92428 0.91013 0.90207 0.93204 0.91571 0.91213 0.88100 0.87841 0.84070 0.81559 0.90913 0.90011 0.88791 0.82697 0.90380 0.94553 0.77751 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.16 37.16 0.34 -1.72 16 2 C 0.06 0.85 2.89 -67.71 -0.20 0.65 16 3 H 0.07 0.91 7.80 -51.93 -0.40 0.50 16 4 C 0.13 1.59 5.20 -4.04 -0.02 1.57 16 5 N -0.61 -7.74 2.78 -181.58 -0.50 -8.24 16 6 C 0.08 0.69 10.25 59.84 0.61 1.30 16 7 C 0.53 8.54 7.01 -10.98 -0.08 8.47 16 8 O -0.49 -10.28 14.27 5.56 0.08 -10.20 16 9 C -0.05 -0.74 4.84 -29.03 -0.14 -0.88 16 10 C 0.07 1.20 6.02 -82.41 -0.50 0.71 16 11 C -0.27 -3.74 10.72 -40.01 -0.43 -4.17 16 12 C 0.04 0.52 11.49 -17.22 -0.20 0.32 16 13 N -0.38 -6.15 4.01 -68.16 -0.27 -6.42 16 14 C 0.10 1.32 11.47 59.85 0.69 2.00 16 15 N -0.22 -4.61 11.92 33.67 0.40 -4.20 16 16 N -0.65 -11.59 4.14 -107.99 -0.45 -12.03 16 17 C 0.05 1.01 5.97 -4.97 -0.03 0.98 16 18 C 0.44 11.23 7.82 -10.98 -0.09 11.14 16 19 O -0.56 -16.47 15.78 5.55 0.09 -16.38 16 20 N -0.57 -15.35 5.29 -10.97 -0.06 -15.41 16 21 C -0.29 -8.50 9.68 -14.94 -0.14 -8.65 16 22 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.53 5.50 -17.47 -0.10 0.44 16 24 N -0.91 -25.66 13.05 55.50 0.72 -24.94 16 25 Si 0.93 21.96 29.55 -169.99 -5.02 16.93 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 32 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.08 1.10 7.43 -51.93 -0.39 0.72 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 36 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 37 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.10 1.38 7.39 -51.93 -0.38 1.00 16 39 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.35 7.14 8.17 -39.29 -0.32 6.82 16 45 H 0.08 1.41 8.06 -51.93 -0.42 0.99 16 46 H 0.04 0.64 7.44 -51.93 -0.39 0.26 16 47 H 0.39 10.02 7.90 -40.82 -0.32 9.70 16 48 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -39.29 402.83 -6.71 -46.00 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -7.49 Total: 16.68 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -0.27 Total: 12.16 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -0.16 Total: -71.26 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: 0.17 Total: -26.59 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -39.29 -6.71 -46.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725481807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.331 kcal (2) G-P(sol) polarization free energy of solvation -39.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds