Wall clock time and date at job start Tue Mar 31 2020 19:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46690 * 2 1 4 4 C 1.52992 * 109.47167 * 240.00003 * 2 1 3 5 5 N 1.46506 * 109.47110 * 185.00042 * 4 2 1 6 6 C 1.46492 * 119.99800 * 269.99838 * 5 4 2 7 7 C 1.34773 * 119.99968 * 89.99382 * 5 4 2 8 8 O 1.21283 * 120.00360 * 359.73034 * 7 5 4 9 9 C 1.50706 * 120.00081 * 180.02562 * 7 5 4 10 10 C 1.50696 * 109.47259 * 179.72770 * 9 7 5 11 11 C 1.39864 * 125.89922 * 124.71541 * 10 9 7 12 12 C 1.35319 * 107.92185 * 179.86251 * 11 10 9 13 13 N 1.34943 * 107.74323 * 0.39627 * 12 11 10 14 14 C 1.46503 * 126.03648 * 179.75101 * 13 12 11 15 15 N 1.30835 * 125.89759 * 305.02217 * 10 9 7 16 16 N 1.46902 * 109.46971 * 119.99503 * 2 1 3 17 17 C 1.46902 * 111.00097 * 275.00347 * 16 2 1 18 18 C 1.50703 * 109.46959 * 180.02562 * 17 16 2 19 19 O 1.21287 * 119.99655 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99809 * 180.02562 * 18 17 16 21 21 C 1.37093 * 120.00010 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99897 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00128 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99771 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00150 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46879 * 59.99865 * 25 23 21 27 27 H 1.48500 * 109.47492 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47077 * 300.00360 * 25 23 21 29 29 H 1.09006 * 109.46904 * 60.00531 * 1 2 3 30 30 H 1.09006 * 109.47195 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47547 * 300.00249 * 1 2 3 32 32 H 1.08995 * 109.47699 * 64.99648 * 4 2 1 33 33 H 1.09002 * 109.47212 * 304.99818 * 4 2 1 34 34 H 1.09001 * 109.47443 * 269.99328 * 6 5 4 35 35 H 1.08999 * 109.47479 * 30.00306 * 6 5 4 36 36 H 1.09006 * 109.47080 * 149.99714 * 6 5 4 37 37 H 1.09001 * 109.46564 * 299.73030 * 9 7 5 38 38 H 1.08998 * 109.47012 * 59.72084 * 9 7 5 39 39 H 1.08007 * 126.04425 * 359.97438 * 11 10 9 40 40 H 1.08002 * 126.12789 * 180.14519 * 12 11 10 41 41 H 1.08993 * 109.47083 * 269.97381 * 14 13 12 42 42 H 1.08999 * 109.47127 * 29.97196 * 14 13 12 43 43 H 1.09005 * 109.46778 * 149.97106 * 14 13 12 44 44 H 1.00900 * 110.99607 * 38.95394 * 16 2 1 45 45 H 1.08999 * 109.47064 * 299.99937 * 17 16 2 46 46 H 1.09002 * 109.47129 * 60.00077 * 17 16 2 47 47 H 0.97002 * 120.00139 * 359.97438 * 20 18 17 48 48 H 0.97004 * 119.99548 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3343 0.2340 -1.7612 7 6 4.0758 -1.8985 -0.6114 8 8 3.3851 -2.7741 -0.1345 9 6 5.5777 -2.0064 -0.5505 10 6 5.9616 -3.2856 0.1475 11 6 6.7956 -4.2830 -0.3682 12 6 6.8955 -5.2631 0.5594 13 7 6.1440 -4.9030 1.6208 14 6 5.9629 -5.6774 2.8511 15 7 5.5678 -3.6577 1.3385 16 7 2.0197 -0.6924 1.1995 17 6 2.0824 0.2228 2.3469 18 6 2.5884 -0.5213 3.5558 19 8 2.8687 -1.6982 3.4700 20 7 2.7285 0.1208 4.7325 21 6 3.1883 -0.5561 5.8324 22 1 3.4379 -1.6041 5.7560 23 6 3.3332 0.1060 7.0453 24 7 3.0299 1.3813 7.1380 25 14 3.9591 -0.8166 8.5441 26 1 5.3150 -1.3535 8.2642 27 1 4.0233 0.1087 9.7039 28 1 3.0371 -1.9383 8.8556 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2951 34 1 4.5426 0.0092 -2.8072 35 1 3.8091 1.1866 -1.6918 36 1 5.2722 0.2953 -1.2091 37 1 5.9831 -2.0088 -1.5623 38 1 5.9810 -1.1567 0.0004 39 1 7.2765 -4.2719 -1.3353 40 1 7.4701 -6.1727 0.4652 41 1 5.1045 -6.3399 2.7404 42 1 6.8573 -6.2705 3.0420 43 1 5.7923 -4.9980 3.6863 44 1 1.4495 -1.4978 1.4101 45 1 2.7587 1.0463 2.1183 46 1 1.0869 0.6164 2.5525 47 1 2.5039 1.0620 4.8011 48 1 3.1308 1.8434 7.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725481807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:55 Heat of formation + Delta-G solvation = -7.554460 kcal Electronic energy + Delta-G solvation = -30252.553859 eV Core-core repulsion = 26150.753811 eV Total energy + Delta-G solvation = -4101.800047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.01592 -40.57978 -40.01842 -37.83628 -36.03887 -35.64408 -34.67164 -33.26846 -32.22001 -31.19513 -30.53449 -28.12358 -27.91338 -27.07833 -25.94676 -25.52109 -22.12680 -21.89436 -21.18833 -20.92424 -19.91870 -19.60259 -17.92633 -17.75249 -17.65843 -16.93694 -16.67365 -16.38936 -16.28910 -16.19631 -15.93990 -15.48587 -15.19018 -14.78017 -14.65082 -14.38816 -14.17963 -13.91748 -13.73759 -13.54968 -13.49344 -13.39650 -13.31457 -13.15524 -13.09541 -13.00475 -12.84667 -12.75269 -12.67323 -12.44912 -12.27654 -12.13172 -11.82466 -11.49680 -11.24939 -10.50068 -10.28332 -10.09271 -9.98978 -9.41750 -9.37082 -8.99457 -8.46308 -5.94133 1.15064 1.36283 1.36475 1.48181 1.80108 1.89525 2.06782 2.09867 2.27836 2.49159 3.01016 3.20511 3.57448 3.66829 3.95150 3.97216 4.02473 4.18859 4.23249 4.35908 4.37383 4.38776 4.42751 4.46525 4.50340 4.58996 4.62659 4.64071 4.65247 4.79986 4.88327 4.88603 4.95828 5.00182 5.07069 5.10876 5.25047 5.26767 5.39274 5.80313 5.87740 5.95342 6.24122 6.31776 6.48903 6.63444 6.73075 7.00371 7.14952 7.58628 7.66139 8.17744 8.71477 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007948 B = 0.004311 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3521.976011 B = 6493.614222 C = 9237.174863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.065 3.935 3 H 0.090 0.910 4 C 0.133 3.867 5 N -0.611 5.611 6 C 0.074 3.926 7 C 0.517 3.483 8 O -0.553 6.553 9 C -0.052 4.052 10 C 0.058 3.942 11 C -0.281 4.281 12 C 0.048 3.952 13 N -0.393 5.393 14 C 0.099 3.901 15 N -0.313 5.313 16 N -0.659 5.659 17 C 0.071 3.929 18 C 0.436 3.564 19 O -0.608 6.608 20 N -0.578 5.578 21 C -0.329 4.329 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.991 3.009 26 H -0.275 1.275 27 H -0.266 1.266 28 H -0.273 1.273 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.145 0.855 38 H 0.103 0.897 39 H 0.177 0.823 40 H 0.216 0.784 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.061 0.939 44 H 0.334 0.666 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.394 0.606 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 -2.603 -21.509 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.046 4.046 3 H 0.108 0.892 4 C 0.009 3.991 5 N -0.344 5.344 6 C -0.068 4.068 7 C 0.304 3.696 8 O -0.429 6.429 9 C -0.093 4.093 10 C -0.109 4.109 11 C -0.311 4.311 12 C -0.097 4.097 13 N -0.176 5.176 14 C -0.042 4.042 15 N -0.135 5.135 16 N -0.290 5.290 17 C -0.062 4.062 18 C 0.223 3.777 19 O -0.492 6.492 20 N -0.217 5.217 21 C -0.459 4.459 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.564 5.564 25 Si 0.814 3.186 26 H -0.200 1.200 27 H -0.190 1.190 28 H -0.198 1.198 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.134 0.866 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.162 0.838 38 H 0.121 0.879 39 H 0.194 0.806 40 H 0.232 0.768 41 H 0.093 0.907 42 H 0.147 0.853 43 H 0.080 0.920 44 H 0.152 0.848 45 H 0.115 0.885 46 H 0.075 0.925 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.159 -3.444 -20.149 21.082 hybrid contribution -0.556 -0.038 0.990 1.136 sum 4.602 -3.482 -19.159 20.009 Atomic orbital electron populations 1.22384 0.95865 1.01912 1.03140 1.22183 0.93471 0.98329 0.90601 0.89217 1.21472 0.79943 1.00760 0.96885 1.47595 1.06697 1.21215 1.58925 1.22011 0.95440 0.90259 0.99124 1.20484 0.90348 0.81811 0.76920 1.90705 1.65472 1.41746 1.45026 1.20139 0.93017 0.93481 1.02702 1.22195 0.97760 0.98059 0.92901 1.21720 1.09684 0.95740 1.03911 1.23241 0.97153 1.01815 0.87472 1.48918 1.37074 1.15687 1.15874 1.21993 1.04687 0.94671 0.82850 1.77795 1.19706 0.97092 1.18912 1.60091 1.58510 1.07871 1.02546 1.21497 1.00162 0.95250 0.89297 1.20997 0.83305 0.88208 0.85201 1.90589 1.55303 1.18184 1.85153 1.41900 1.59190 1.12431 1.08153 1.19529 1.42016 0.95616 0.88699 0.91168 1.25983 0.97420 0.96655 1.01174 1.69670 1.49031 1.09589 1.28069 0.85037 0.78584 0.77918 0.77048 1.19997 1.18997 1.19827 0.89168 0.93480 0.93207 0.86633 0.92793 0.90323 0.89848 0.91005 0.83753 0.87905 0.80581 0.76788 0.90744 0.85340 0.91966 0.84804 0.88539 0.92492 0.77221 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.16 71.98 0.66 -3.00 16 2 C 0.06 1.60 2.89 44.91 0.13 1.73 16 3 H 0.09 1.94 7.80 -2.39 -0.02 1.93 16 4 C 0.13 2.96 5.20 86.38 0.45 3.41 16 5 N -0.61 -14.52 2.78 -846.77 -2.35 -16.87 16 6 C 0.07 1.00 10.25 127.77 1.31 2.31 16 7 C 0.52 17.00 7.01 87.66 0.61 17.61 16 8 O -0.55 -24.43 14.27 -3.04 -0.04 -24.48 16 9 C -0.05 -1.43 4.84 29.10 0.14 -1.29 16 10 C 0.06 2.01 6.02 43.10 0.26 2.27 16 11 C -0.28 -7.39 10.72 21.99 0.24 -7.16 16 12 C 0.05 1.21 11.49 83.54 0.96 2.17 16 13 N -0.39 -13.30 4.01 -369.56 -1.48 -14.78 16 14 C 0.10 2.67 11.47 127.77 1.47 4.13 16 15 N -0.31 -13.62 11.92 -47.39 -0.56 -14.18 16 16 N -0.66 -24.23 4.14 -495.57 -2.05 -26.28 16 17 C 0.07 2.74 5.97 85.56 0.51 3.25 16 18 C 0.44 23.14 7.82 87.66 0.69 23.83 16 19 O -0.61 -38.14 15.78 -3.05 -0.05 -38.19 16 20 N -0.58 -32.22 5.29 -306.99 -1.62 -33.84 16 21 C -0.33 -20.08 9.68 84.04 0.81 -19.26 16 22 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 24 N -0.92 -52.10 13.05 21.66 0.28 -51.82 16 25 Si 0.99 45.41 29.55 68.60 2.03 47.44 16 26 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 28 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 29 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.05 1.11 8.13 -2.38 -0.02 1.09 16 31 H 0.05 1.13 7.45 -2.39 -0.02 1.11 16 32 H 0.12 1.57 8.07 -2.39 -0.02 1.55 16 33 H 0.05 1.51 7.43 -2.39 -0.02 1.49 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 0.88 8.07 -2.39 -0.02 0.86 16 36 H 0.07 0.97 6.43 -2.38 -0.02 0.96 16 37 H 0.14 2.47 8.09 -2.39 -0.02 2.45 16 38 H 0.10 2.77 7.39 -2.39 -0.02 2.75 16 39 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 40 H 0.22 2.95 8.06 -2.91 -0.02 2.92 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.33 14.38 8.17 -89.69 -0.73 13.65 16 45 H 0.10 3.40 8.06 -2.39 -0.02 3.38 16 46 H 0.06 1.98 7.44 -2.39 -0.02 1.97 16 47 H 0.39 20.77 7.90 -92.71 -0.73 20.04 16 48 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -94.03 402.83 2.37 -91.66 By element: Atomic # 1 Polarization: 52.10 SS G_CDS: -0.48 Total: 51.62 kcal Atomic # 6 Polarization: 21.03 SS G_CDS: 8.70 Total: 29.73 kcal Atomic # 7 Polarization: -150.00 SS G_CDS: -7.79 Total: -157.78 kcal Atomic # 8 Polarization: -62.58 SS G_CDS: -0.09 Total: -62.67 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -94.03 2.37 -91.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725481807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.107 kcal (2) G-P(sol) polarization free energy of solvation -94.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds