Wall clock time and date at job start Tue Mar 31 2020 19:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47359 * 2 1 4 4 C 1.53005 * 109.47528 * 120.00108 * 2 1 3 5 5 N 1.46492 * 109.47201 * 175.00284 * 4 2 1 6 6 C 1.46499 * 120.00019 * 269.99828 * 5 4 2 7 7 C 1.34774 * 120.00453 * 90.00281 * 5 4 2 8 8 O 1.21286 * 119.99519 * 359.97438 * 7 5 4 9 9 C 1.50694 * 120.00713 * 179.97438 * 7 5 4 10 10 C 1.50699 * 109.47843 * 179.97438 * 9 7 5 11 11 C 1.39869 * 125.90295 * 124.99796 * 10 9 7 12 12 C 1.35312 * 107.91889 * 180.22479 * 11 10 9 13 13 N 1.34951 * 107.74772 * 359.61173 * 12 11 10 14 14 C 1.46501 * 126.03602 * 180.15058 * 13 12 11 15 15 N 1.30837 * 125.89517 * 304.98057 * 10 9 7 16 16 N 1.46902 * 109.47438 * 240.00392 * 2 1 3 17 17 C 1.46893 * 111.00235 * 84.99754 * 16 2 1 18 18 C 1.50700 * 109.47350 * 180.02562 * 17 16 2 19 19 O 1.21297 * 119.99875 * 0.02562 * 18 17 16 20 20 N 1.34782 * 120.00294 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99991 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99747 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99528 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00266 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99637 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47365 * 89.99762 * 25 23 21 27 27 H 1.48502 * 109.47034 * 210.00130 * 25 23 21 28 28 H 1.48503 * 109.47016 * 329.99868 * 25 23 21 29 29 H 1.08998 * 109.47616 * 299.99734 * 1 2 3 30 30 H 1.08997 * 109.47467 * 60.00418 * 1 2 3 31 31 H 1.09006 * 109.46655 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46685 * 55.00253 * 4 2 1 33 33 H 1.09006 * 109.46810 * 295.00464 * 4 2 1 34 34 H 1.09003 * 109.47445 * 270.00277 * 6 5 4 35 35 H 1.08999 * 109.47468 * 30.00087 * 6 5 4 36 36 H 1.09005 * 109.47434 * 150.00652 * 6 5 4 37 37 H 1.09002 * 109.47210 * 59.99659 * 9 7 5 38 38 H 1.09007 * 109.47214 * 299.99761 * 9 7 5 39 39 H 1.08002 * 126.03560 * 359.95589 * 11 10 9 40 40 H 1.08008 * 126.12506 * 179.75891 * 12 11 10 41 41 H 1.08999 * 109.47098 * 270.25891 * 14 13 12 42 42 H 1.08998 * 109.47303 * 30.25669 * 14 13 12 43 43 H 1.08994 * 109.47129 * 150.25391 * 14 13 12 44 44 H 1.00899 * 110.99680 * 321.04052 * 16 2 1 45 45 H 1.09005 * 109.47330 * 300.00429 * 17 16 2 46 46 H 1.09002 * 109.47442 * 60.00169 * 17 16 2 47 47 H 0.97001 * 119.99736 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00100 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5000 -0.8263 1.1905 6 6 4.1259 -1.9918 0.5611 7 6 4.2676 0.1492 1.7156 8 8 3.7494 1.1143 2.2363 9 6 5.7694 0.0410 1.6557 10 6 6.3868 1.2516 2.3070 11 6 7.3165 1.2364 3.3519 12 6 7.6211 2.5191 3.6568 13 7 6.9160 3.3175 2.8282 14 6 6.9462 4.7820 2.8101 15 7 6.1460 2.4986 1.9923 16 7 2.0197 -0.6924 -1.1995 17 6 2.0825 0.2227 -2.3468 18 6 2.5874 -0.5217 -3.5560 19 8 2.8670 -1.6989 -3.4704 20 7 2.7274 0.1204 -4.7328 21 6 3.1872 -0.5567 -5.8326 22 1 3.4369 -1.6046 -5.7562 23 6 3.3310 0.1052 -7.0459 24 7 3.0266 1.3802 -7.1389 25 14 3.9569 -0.8174 -8.5447 26 1 2.8077 -1.4008 -9.2824 27 1 4.6906 0.1201 -9.4323 28 1 4.8700 -1.9052 -8.1106 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6055 -1.7199 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 4.2824 -2.7687 1.3095 35 1 3.4758 -2.3721 -0.2268 36 1 5.0852 -1.7019 0.1324 37 1 6.0886 -0.0137 0.6149 38 1 6.0902 -0.8582 2.1818 39 1 7.7168 0.3564 3.8334 40 1 8.3076 2.8453 4.4241 41 1 6.1860 5.1695 3.4884 42 1 7.9288 5.1292 3.1293 43 1 6.7462 5.1371 1.7992 44 1 1.4496 -1.4979 -1.4100 45 1 1.0870 0.6164 -2.5525 46 1 2.7588 1.0463 -2.1182 47 1 2.5034 1.0617 -4.8013 48 1 3.1266 1.8421 -7.9860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725481808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:58 Heat of formation + Delta-G solvation = 16.364683 kcal Electronic energy + Delta-G solvation = -29247.042640 eV Core-core repulsion = 25146.279804 eV Total energy + Delta-G solvation = -4100.762836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25036 -39.66187 -38.30432 -36.74673 -34.70907 -33.94288 -33.82015 -31.37102 -31.02265 -30.37567 -29.68213 -27.22753 -26.42314 -26.13899 -24.98261 -23.82073 -21.28142 -21.12930 -20.17412 -19.23284 -18.70544 -17.86356 -17.11008 -16.83595 -16.16959 -15.85895 -15.59859 -15.33389 -15.13369 -14.60022 -14.53748 -14.17839 -13.90712 -13.82963 -13.59564 -13.37794 -13.13162 -12.95748 -12.68692 -12.64759 -12.43112 -12.31741 -12.20457 -12.11288 -12.01724 -11.72187 -11.58814 -11.48996 -11.25896 -11.01912 -10.84595 -10.56700 -10.38427 -10.19971 -9.64682 -9.48694 -9.23607 -8.63374 -8.61331 -8.30295 -7.95494 -7.87106 -6.39416 -3.80275 1.86489 2.45048 2.68187 2.83756 3.18821 3.27293 3.30783 3.33192 3.94344 4.13289 4.34541 4.40066 4.60804 4.74226 4.83114 4.97381 5.01227 5.12152 5.14371 5.22398 5.24252 5.27380 5.37789 5.40492 5.50897 5.53561 5.58580 5.64988 5.72209 5.80315 5.83813 5.85317 5.94816 6.01774 6.12317 6.15133 6.25700 6.32253 6.56405 6.71522 6.94228 7.27242 7.56838 7.59587 7.73308 7.74791 8.08653 8.39746 8.63653 9.19911 9.57337 10.08436 10.78391 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.002681 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.076933 B =10442.526051 C =11863.643427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.064 3.936 3 H 0.081 0.919 4 C 0.133 3.867 5 N -0.596 5.596 6 C 0.083 3.917 7 C 0.517 3.483 8 O -0.536 6.536 9 C -0.059 4.059 10 C 0.085 3.915 11 C -0.267 4.267 12 C 0.046 3.954 13 N -0.379 5.379 14 C 0.103 3.897 15 N -0.259 5.259 16 N -0.657 5.657 17 C 0.052 3.948 18 C 0.443 3.557 19 O -0.585 6.585 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.146 0.854 40 H 0.171 0.829 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.346 0.654 45 H 0.041 0.959 46 H 0.083 0.917 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 1.553 22.121 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.048 4.048 3 H 0.099 0.901 4 C 0.009 3.991 5 N -0.328 5.328 6 C -0.060 4.060 7 C 0.304 3.696 8 O -0.412 6.412 9 C -0.100 4.100 10 C -0.083 4.083 11 C -0.297 4.297 12 C -0.099 4.099 13 N -0.161 5.161 14 C -0.039 4.039 15 N -0.081 5.081 16 N -0.289 5.289 17 C -0.081 4.081 18 C 0.229 3.771 19 O -0.469 6.469 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.164 0.836 40 H 0.188 0.812 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.166 0.834 45 H 0.059 0.941 46 H 0.101 0.899 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.899 2.445 21.684 22.365 hybrid contribution -0.280 -0.099 -0.626 0.692 sum 4.619 2.346 21.059 21.687 Atomic orbital electron populations 1.22450 0.97029 1.02154 1.02371 1.22039 0.92407 0.98988 0.91323 0.90111 1.21419 0.79752 1.00701 0.97233 1.47509 1.06118 1.21691 1.57498 1.21856 0.99698 0.86762 0.97720 1.20303 0.88886 0.82308 0.78115 1.90703 1.74858 1.30873 1.44784 1.20064 0.92320 0.94696 1.02942 1.21593 0.97014 0.92809 0.96871 1.21324 1.07047 0.97099 1.04202 1.22454 0.98977 0.91117 0.97362 1.48561 1.33536 1.06668 1.27349 1.21818 1.02929 0.74457 1.04657 1.77496 1.14222 1.01401 1.15019 1.60189 1.57258 1.08994 1.02444 1.21672 0.99768 0.95756 0.90861 1.19816 0.84982 0.88186 0.84126 1.90499 1.55503 1.16213 1.84708 1.41880 1.57774 1.12473 1.07981 1.19686 1.39958 0.96396 0.86748 0.87940 1.25262 0.97720 0.95755 0.99260 1.69615 1.48736 1.08875 1.27095 0.85868 0.78858 0.78964 0.80648 1.20466 1.20956 1.19396 0.92102 0.92332 0.92298 0.90764 0.90015 0.93721 0.88735 0.91404 0.87034 0.87248 0.83613 0.81181 0.90888 0.89672 0.89241 0.83437 0.94057 0.89907 0.77501 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.16 37.15 0.34 -1.68 16 2 C 0.06 0.85 2.89 -67.71 -0.20 0.66 16 3 H 0.08 1.26 7.80 -51.93 -0.40 0.86 16 4 C 0.13 1.62 5.15 -4.04 -0.02 1.59 16 5 N -0.60 -7.68 2.73 -181.57 -0.50 -8.17 16 6 C 0.08 0.93 9.86 59.85 0.59 1.52 16 7 C 0.52 7.57 7.66 -10.99 -0.08 7.49 16 8 O -0.54 -9.76 15.14 5.55 0.08 -9.68 16 9 C -0.06 -0.71 4.83 -29.04 -0.14 -0.85 16 10 C 0.08 1.18 6.01 -82.41 -0.50 0.68 16 11 C -0.27 -2.98 10.72 -40.01 -0.43 -3.41 16 12 C 0.05 0.46 11.49 -17.22 -0.20 0.26 16 13 N -0.38 -4.57 4.01 -68.16 -0.27 -4.85 16 14 C 0.10 0.79 11.47 59.85 0.69 1.47 16 15 N -0.26 -4.12 11.92 33.67 0.40 -3.72 16 16 N -0.66 -10.26 4.13 -107.99 -0.45 -10.71 16 17 C 0.05 0.95 5.96 -4.98 -0.03 0.92 16 18 C 0.44 10.41 7.82 -10.98 -0.09 10.33 16 19 O -0.58 -15.36 15.78 5.54 0.09 -15.28 16 20 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 25 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.08 1.04 7.42 -51.93 -0.39 0.65 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 1.24 6.92 -51.93 -0.36 0.88 16 36 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 37 H 0.11 1.31 7.40 -51.93 -0.38 0.93 16 38 H 0.11 0.95 8.09 -51.93 -0.42 0.53 16 39 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.35 5.47 8.17 -39.29 -0.32 5.15 16 45 H 0.04 0.70 7.44 -51.93 -0.39 0.31 16 46 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 47 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 48 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -36.51 402.73 -6.67 -43.18 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -7.43 Total: 14.72 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -0.30 Total: 10.98 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -0.15 Total: -66.13 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.17 Total: -24.96 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.51 -6.67 -43.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725481808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.541 kcal (2) G-P(sol) polarization free energy of solvation -36.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds