Wall clock time and date at job start Tue Mar 31 2020 19:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47359 * 2 1 4 4 C 1.53005 * 109.47528 * 120.00108 * 2 1 3 5 5 N 1.46492 * 109.47201 * 175.00284 * 4 2 1 6 6 C 1.46499 * 120.00019 * 269.99828 * 5 4 2 7 7 C 1.34774 * 120.00453 * 90.00281 * 5 4 2 8 8 O 1.21286 * 119.99519 * 359.97438 * 7 5 4 9 9 C 1.50694 * 120.00713 * 179.97438 * 7 5 4 10 10 C 1.50699 * 109.47843 * 179.97438 * 9 7 5 11 11 C 1.39869 * 125.90295 * 124.99796 * 10 9 7 12 12 C 1.35312 * 107.91889 * 180.22479 * 11 10 9 13 13 N 1.34951 * 107.74772 * 359.61173 * 12 11 10 14 14 C 1.46501 * 126.03602 * 180.15058 * 13 12 11 15 15 N 1.30837 * 125.89517 * 304.98057 * 10 9 7 16 16 N 1.46902 * 109.47438 * 240.00392 * 2 1 3 17 17 C 1.46893 * 111.00235 * 84.99754 * 16 2 1 18 18 C 1.50700 * 109.47350 * 180.02562 * 17 16 2 19 19 O 1.21297 * 119.99875 * 0.02562 * 18 17 16 20 20 N 1.34782 * 120.00294 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99991 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99747 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99528 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00266 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99637 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47365 * 89.99762 * 25 23 21 27 27 H 1.48502 * 109.47034 * 210.00130 * 25 23 21 28 28 H 1.48503 * 109.47016 * 329.99868 * 25 23 21 29 29 H 1.08998 * 109.47616 * 299.99734 * 1 2 3 30 30 H 1.08997 * 109.47467 * 60.00418 * 1 2 3 31 31 H 1.09006 * 109.46655 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46685 * 55.00253 * 4 2 1 33 33 H 1.09006 * 109.46810 * 295.00464 * 4 2 1 34 34 H 1.09003 * 109.47445 * 270.00277 * 6 5 4 35 35 H 1.08999 * 109.47468 * 30.00087 * 6 5 4 36 36 H 1.09005 * 109.47434 * 150.00652 * 6 5 4 37 37 H 1.09002 * 109.47210 * 59.99659 * 9 7 5 38 38 H 1.09007 * 109.47214 * 299.99761 * 9 7 5 39 39 H 1.08002 * 126.03560 * 359.95589 * 11 10 9 40 40 H 1.08008 * 126.12506 * 179.75891 * 12 11 10 41 41 H 1.08999 * 109.47098 * 270.25891 * 14 13 12 42 42 H 1.08998 * 109.47303 * 30.25669 * 14 13 12 43 43 H 1.08994 * 109.47129 * 150.25391 * 14 13 12 44 44 H 1.00899 * 110.99680 * 321.04052 * 16 2 1 45 45 H 1.09005 * 109.47330 * 300.00429 * 17 16 2 46 46 H 1.09002 * 109.47442 * 60.00169 * 17 16 2 47 47 H 0.97001 * 119.99736 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00100 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5000 -0.8263 1.1905 6 6 4.1259 -1.9918 0.5611 7 6 4.2676 0.1492 1.7156 8 8 3.7494 1.1143 2.2363 9 6 5.7694 0.0410 1.6557 10 6 6.3868 1.2516 2.3070 11 6 7.3165 1.2364 3.3519 12 6 7.6211 2.5191 3.6568 13 7 6.9160 3.3175 2.8282 14 6 6.9462 4.7820 2.8101 15 7 6.1460 2.4986 1.9923 16 7 2.0197 -0.6924 -1.1995 17 6 2.0825 0.2227 -2.3468 18 6 2.5874 -0.5217 -3.5560 19 8 2.8670 -1.6989 -3.4704 20 7 2.7274 0.1204 -4.7328 21 6 3.1872 -0.5567 -5.8326 22 1 3.4369 -1.6046 -5.7562 23 6 3.3310 0.1052 -7.0459 24 7 3.0266 1.3802 -7.1389 25 14 3.9569 -0.8174 -8.5447 26 1 2.8077 -1.4008 -9.2824 27 1 4.6906 0.1201 -9.4323 28 1 4.8700 -1.9052 -8.1106 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6055 -1.7199 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 4.2824 -2.7687 1.3095 35 1 3.4758 -2.3721 -0.2268 36 1 5.0852 -1.7019 0.1324 37 1 6.0886 -0.0137 0.6149 38 1 6.0902 -0.8582 2.1818 39 1 7.7168 0.3564 3.8334 40 1 8.3076 2.8453 4.4241 41 1 6.1860 5.1695 3.4884 42 1 7.9288 5.1292 3.1293 43 1 6.7462 5.1371 1.7992 44 1 1.4496 -1.4979 -1.4100 45 1 1.0870 0.6164 -2.5525 46 1 2.7588 1.0463 -2.1182 47 1 2.5034 1.0617 -4.8013 48 1 3.1266 1.8421 -7.9860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725481808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:57 Heat of formation + Delta-G solvation = -10.647250 kcal Electronic energy + Delta-G solvation = -29248.213965 eV Core-core repulsion = 25146.279804 eV Total energy + Delta-G solvation = -4101.934161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.10322 -40.76837 -40.11225 -38.04962 -36.06384 -35.68719 -34.75811 -33.28735 -32.33021 -31.27694 -30.60898 -28.20632 -27.94916 -27.13434 -26.08130 -25.45518 -22.28514 -21.99466 -21.26505 -20.98927 -19.92158 -19.71619 -18.07789 -17.78733 -17.67273 -17.10835 -16.81579 -16.45393 -16.40038 -16.15824 -16.03739 -15.52022 -15.24357 -14.84431 -14.74725 -14.53844 -14.29489 -13.95013 -13.79957 -13.58883 -13.50459 -13.45796 -13.32304 -13.22461 -13.12306 -13.05140 -12.91752 -12.79589 -12.63882 -12.45109 -12.37786 -12.11505 -11.91207 -11.49299 -11.46347 -10.77204 -10.35524 -10.16015 -10.01392 -9.64834 -9.42909 -9.11065 -8.46116 -5.95074 1.04174 1.38232 1.41648 1.54873 1.72987 1.73779 1.81799 2.05114 2.28349 2.33676 2.91392 3.21086 3.54974 3.57095 3.77249 3.94606 3.97084 4.13850 4.19970 4.30588 4.33069 4.37987 4.41898 4.42359 4.46305 4.54886 4.60821 4.63253 4.66757 4.75640 4.84528 4.89453 4.92157 4.95040 4.99096 5.16124 5.21177 5.29958 5.41124 5.68627 5.73716 5.87637 6.07935 6.25576 6.47215 6.56302 6.59348 6.86120 7.12311 7.31789 7.56087 8.10027 8.71592 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.002681 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.076933 B =10442.526051 C =11863.643427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 H 0.054 0.946 4 C 0.133 3.867 5 N -0.594 5.594 6 C 0.083 3.917 7 C 0.510 3.490 8 O -0.579 6.579 9 C -0.055 4.055 10 C 0.064 3.936 11 C -0.283 4.283 12 C 0.055 3.945 13 N -0.388 5.388 14 C 0.095 3.905 15 N -0.325 5.325 16 N -0.657 5.657 17 C 0.068 3.932 18 C 0.444 3.556 19 O -0.613 6.613 20 N -0.577 5.577 21 C -0.330 4.330 22 H 0.083 0.917 23 C -0.016 4.016 24 N -0.924 5.924 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.273 1.273 28 H -0.270 1.270 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.144 0.856 39 H 0.172 0.828 40 H 0.216 0.784 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.348 0.652 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.393 0.607 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 0.873 23.305 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.040 4.040 3 H 0.072 0.928 4 C 0.009 3.991 5 N -0.325 5.325 6 C -0.059 4.059 7 C 0.299 3.701 8 O -0.459 6.459 9 C -0.096 4.096 10 C -0.102 4.102 11 C -0.312 4.312 12 C -0.090 4.090 13 N -0.171 5.171 14 C -0.045 4.045 15 N -0.148 5.148 16 N -0.290 5.290 17 C -0.064 4.064 18 C 0.232 3.768 19 O -0.499 6.499 20 N -0.214 5.214 21 C -0.459 4.459 22 H 0.101 0.899 23 C -0.216 4.216 24 N -0.565 5.565 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.198 1.198 28 H -0.194 1.194 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.162 0.838 39 H 0.189 0.811 40 H 0.233 0.767 41 H 0.097 0.903 42 H 0.142 0.858 43 H 0.096 0.904 44 H 0.167 0.833 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.226 0.774 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.647 1.758 22.871 23.623 hybrid contribution -0.512 0.142 -0.907 1.052 sum 5.135 1.900 21.964 22.636 Atomic orbital electron populations 1.22369 0.94969 1.03268 1.02646 1.21987 0.93991 0.97397 0.90671 0.92754 1.21477 0.79628 1.01814 0.96180 1.47636 1.06429 1.21719 1.56738 1.21929 0.99091 0.86773 0.98121 1.20770 0.90027 0.81813 0.77517 1.90673 1.75773 1.32522 1.46891 1.20146 0.90446 0.95827 1.03220 1.22004 0.97711 0.92700 0.97815 1.21731 1.06865 0.98786 1.03848 1.23218 0.98219 0.90593 0.97017 1.48909 1.33130 1.07925 1.27130 1.22116 1.05406 0.72632 1.04393 1.77382 1.16828 1.02877 1.17738 1.60164 1.58029 1.08733 1.02067 1.21450 1.00273 0.95293 0.89406 1.20668 0.83369 0.88008 0.84779 1.90470 1.56348 1.17698 1.85338 1.41971 1.58487 1.12530 1.08377 1.19691 1.41915 0.96015 0.88320 0.89899 1.26087 0.97323 0.96587 1.01570 1.69690 1.48917 1.09888 1.28055 0.84906 0.78458 0.77812 0.77046 1.19560 1.19827 1.19440 0.90830 0.93059 0.90731 0.88260 0.90438 0.90527 0.90438 0.91363 0.87341 0.83812 0.81073 0.76706 0.90284 0.85847 0.90358 0.83255 0.92262 0.90015 0.77354 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 9.16 71.98 0.66 -2.98 16 2 C 0.07 1.85 2.89 44.91 0.13 1.98 16 3 H 0.05 1.73 7.80 -2.39 -0.02 1.72 16 4 C 0.13 3.11 5.15 86.38 0.44 3.55 16 5 N -0.59 -14.95 2.73 -846.76 -2.31 -17.26 16 6 C 0.08 1.77 9.86 127.77 1.26 3.03 16 7 C 0.51 15.08 7.66 87.66 0.67 15.75 16 8 O -0.58 -21.79 15.14 -3.05 -0.05 -21.84 16 9 C -0.06 -1.32 4.83 29.10 0.14 -1.18 16 10 C 0.06 1.79 6.01 43.10 0.26 2.05 16 11 C -0.28 -5.91 10.72 21.99 0.24 -5.68 16 12 C 0.06 0.99 11.49 83.54 0.96 1.95 16 13 N -0.39 -9.18 4.01 -369.57 -1.48 -10.66 16 14 C 0.09 1.38 11.47 127.77 1.47 2.84 16 15 N -0.33 -10.64 11.92 -47.39 -0.56 -11.21 16 16 N -0.66 -20.33 4.13 -495.58 -2.05 -22.38 16 17 C 0.07 2.50 5.96 85.56 0.51 3.01 16 18 C 0.44 21.22 7.82 87.66 0.69 21.90 16 19 O -0.61 -32.70 15.78 -3.08 -0.05 -32.75 16 20 N -0.58 -30.20 5.29 -306.97 -1.62 -31.82 16 21 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 22 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 23 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 24 N -0.92 -51.08 13.05 21.66 0.28 -50.80 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 31 H 0.07 1.35 8.13 -2.38 -0.02 1.33 16 32 H 0.10 1.83 8.07 -2.39 -0.02 1.81 16 33 H 0.08 1.93 7.42 -2.38 -0.02 1.91 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.96 6.92 -2.39 -0.02 1.94 16 36 H 0.07 1.44 6.44 -2.38 -0.02 1.43 16 37 H 0.11 2.61 7.40 -2.39 -0.02 2.59 16 38 H 0.14 2.26 8.09 -2.38 -0.02 2.24 16 39 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.22 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.35 10.71 8.17 -89.70 -0.73 9.97 16 45 H 0.06 1.97 7.44 -2.38 -0.02 1.95 16 46 H 0.08 3.03 8.06 -2.39 -0.02 3.01 16 47 H 0.39 20.04 7.90 -92.71 -0.73 19.30 16 48 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -81.94 402.73 2.41 -79.53 By element: Atomic # 1 Polarization: 46.61 SS G_CDS: -0.48 Total: 46.14 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 8.70 Total: 27.78 kcal Atomic # 7 Polarization: -136.38 SS G_CDS: -7.75 Total: -144.13 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -0.09 Total: -54.59 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -81.94 2.41 -79.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725481808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.883 kcal (2) G-P(sol) polarization free energy of solvation -81.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds