Wall clock time and date at job start Tue Mar 31 2020 19:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47426 * 2 1 4 4 C 1.52999 * 109.47410 * 240.00050 * 2 1 3 5 5 N 1.46501 * 109.47589 * 185.00009 * 4 2 1 6 6 C 1.46503 * 119.99648 * 269.99976 * 5 4 2 7 7 C 1.34771 * 120.00143 * 89.99415 * 5 4 2 8 8 O 1.21276 * 120.00118 * 0.02562 * 7 5 4 9 9 C 1.50706 * 119.99957 * 180.02562 * 7 5 4 10 10 C 1.50697 * 109.47023 * 180.02562 * 9 7 5 11 11 C 1.34675 * 126.59403 * 85.02341 * 10 9 7 12 12 N 1.34124 * 108.02139 * 179.73770 * 11 10 9 13 13 C 1.30503 * 109.25583 * 359.97438 * 12 11 10 14 14 N 1.35041 * 108.69928 * 0.02562 * 13 12 11 15 15 C 1.46499 * 126.39322 * 180.02562 * 14 13 12 16 16 N 1.46903 * 109.47360 * 119.99945 * 2 1 3 17 17 C 1.46901 * 110.99872 * 275.00165 * 16 2 1 18 18 C 1.50702 * 109.46879 * 180.02562 * 17 16 2 19 19 O 1.21284 * 120.00294 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99373 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99370 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00032 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99805 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00167 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00043 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47119 * 89.99935 * 25 23 21 27 27 H 1.48494 * 109.46938 * 209.99870 * 25 23 21 28 28 H 1.48507 * 109.46792 * 329.99589 * 25 23 21 29 29 H 1.08998 * 109.47440 * 299.99760 * 1 2 3 30 30 H 1.08995 * 109.47617 * 60.00462 * 1 2 3 31 31 H 1.09011 * 109.47036 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46959 * 64.99583 * 4 2 1 33 33 H 1.09002 * 109.46926 * 304.99630 * 4 2 1 34 34 H 1.08997 * 109.47515 * 269.99630 * 6 5 4 35 35 H 1.09006 * 109.47202 * 29.99917 * 6 5 4 36 36 H 1.09004 * 109.47216 * 149.99464 * 6 5 4 37 37 H 1.08989 * 109.47052 * 60.00382 * 9 7 5 38 38 H 1.09002 * 109.46804 * 300.00032 * 9 7 5 39 39 H 1.07993 * 125.98561 * 359.73433 * 11 10 9 40 40 H 1.07997 * 125.64686 * 179.97438 * 13 12 11 41 41 H 1.09006 * 109.47289 * 269.95547 * 15 14 13 42 42 H 1.08996 * 109.47327 * 29.95915 * 15 14 13 43 43 H 1.09002 * 109.46825 * 149.95962 * 15 14 13 44 44 H 1.00901 * 110.99888 * 151.05088 * 16 2 1 45 45 H 1.08999 * 109.47135 * 299.99679 * 17 16 2 46 46 H 1.09001 * 109.47390 * 59.99943 * 17 16 2 47 47 H 0.96998 * 120.00513 * 359.97438 * 20 18 17 48 48 H 0.96994 * 120.00536 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.3343 0.2341 -1.7613 7 6 4.0758 -1.8986 -0.6115 8 8 3.3852 -2.7766 -0.1394 9 6 5.5777 -2.0064 -0.5507 10 6 5.9616 -3.2892 0.1408 11 6 6.0772 -4.5044 -0.4281 12 7 6.4418 -5.3754 0.5244 13 6 6.5572 -4.7460 1.6618 14 7 6.2660 -3.4419 1.4665 15 6 6.2753 -2.3875 2.4834 16 7 2.0197 -0.6925 1.1994 17 6 2.0824 0.2226 2.3469 18 6 2.5885 -0.5215 3.5557 19 8 2.8689 -1.6984 3.4699 20 7 2.7287 0.1207 4.7323 21 6 3.1886 -0.5564 5.8322 22 1 3.4382 -1.6043 5.7558 23 6 3.3336 0.1057 7.0452 24 7 3.0303 1.3810 7.1380 25 14 3.9609 -0.8166 8.5436 26 1 5.4419 -0.7223 8.5986 27 1 3.3808 -0.2175 9.7723 28 1 3.5587 -2.2431 8.4510 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0278 0.0005 32 1 1.7516 -0.1583 -2.1369 33 1 1.6054 -1.7198 -1.2951 34 1 4.5424 0.0094 -2.8074 35 1 3.8089 1.1867 -1.6919 36 1 5.2722 0.2954 -1.2093 37 1 5.9806 -1.1594 0.0044 38 1 5.9834 -2.0039 -1.5625 39 1 5.9061 -4.7368 -1.4687 40 1 6.8381 -5.1941 2.6035 41 1 5.2885 -2.3153 2.9410 42 1 7.0139 -2.6268 3.2484 43 1 6.5301 -1.4356 2.0175 44 1 2.9173 -1.1204 1.0287 45 1 2.7588 1.0462 2.1182 46 1 1.0870 0.6163 2.5526 47 1 2.5041 1.0619 4.8010 48 1 3.1319 1.8434 7.9846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725518957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:01 Heat of formation + Delta-G solvation = 5.024848 kcal Electronic energy + Delta-G solvation = -30802.663552 eV Core-core repulsion = 26701.408984 eV Total energy + Delta-G solvation = -4101.254568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93141 -40.15371 -38.26115 -36.68069 -35.00221 -33.92027 -33.78714 -32.27107 -31.31051 -30.80779 -27.90241 -27.24257 -26.70530 -26.37683 -25.33402 -23.95346 -21.26520 -20.90293 -20.06776 -19.33705 -18.97176 -17.92386 -17.26510 -16.90505 -16.65468 -16.17263 -15.66661 -15.26937 -15.15999 -14.84193 -14.46762 -14.26057 -13.87058 -13.81722 -13.50350 -13.43804 -13.31604 -12.97824 -12.79242 -12.67632 -12.58531 -12.46483 -12.36921 -12.12032 -12.00580 -11.84223 -11.63931 -11.51339 -11.36269 -11.13215 -10.87945 -10.43292 -10.25528 -9.84496 -9.77856 -9.54121 -9.29088 -8.79747 -8.40293 -8.16785 -8.00635 -7.92995 -6.45064 -3.85866 2.12725 2.59793 2.86176 3.05168 3.13366 3.23045 3.29056 3.39783 3.88852 4.08269 4.32656 4.46687 4.61706 4.74734 4.84607 4.88098 4.90294 4.96859 5.03212 5.13644 5.15304 5.21437 5.28838 5.30155 5.36430 5.44424 5.45589 5.52551 5.73455 5.77082 5.81074 5.89664 5.95153 6.01243 6.04349 6.21160 6.29717 6.44290 6.52837 6.89640 7.18021 7.35133 7.39124 7.51201 7.81472 8.03495 8.16876 8.26883 8.59399 9.15111 9.51841 10.04300 10.72757 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008973 B = 0.004344 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.654539 B = 6444.320931 C = 8842.322894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.038 0.962 4 C 0.113 3.887 5 N -0.628 5.628 6 C 0.076 3.924 7 C 0.502 3.498 8 O -0.487 6.487 9 C -0.061 4.061 10 C -0.013 4.013 11 C -0.013 4.013 12 N -0.499 5.499 13 C 0.186 3.814 14 N -0.441 5.441 15 C 0.063 3.937 16 N -0.657 5.657 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.574 6.574 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.927 3.073 26 H -0.279 1.279 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.163 0.837 40 H 0.203 0.797 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.352 0.648 45 H 0.035 0.965 46 H 0.083 0.917 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 3.207 -18.114 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 H 0.056 0.944 4 C -0.009 4.009 5 N -0.365 5.365 6 C -0.067 4.067 7 C 0.289 3.711 8 O -0.358 6.358 9 C -0.102 4.102 10 C -0.129 4.129 11 C -0.162 4.162 12 N -0.217 5.217 13 C -0.096 4.096 14 N -0.122 5.122 15 C -0.079 4.079 16 N -0.296 5.296 17 C -0.084 4.084 18 C 0.226 3.774 19 O -0.458 6.458 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.754 3.246 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.180 0.820 40 H 0.220 0.780 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.177 0.823 45 H 0.053 0.947 46 H 0.102 0.898 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.216 1.046 -17.561 18.090 hybrid contribution 0.689 1.996 0.929 2.307 sum 4.905 3.042 -16.632 17.605 Atomic orbital electron populations 1.21743 0.94074 1.02732 1.01097 1.21928 0.96399 0.95587 0.90557 0.94361 1.21736 0.79025 1.03030 0.97140 1.47953 1.06949 1.21634 1.59967 1.21827 0.95531 0.90779 0.98585 1.20634 0.90482 0.81787 0.78231 1.90880 1.64060 1.37986 1.42915 1.20020 0.93146 0.94899 1.02100 1.20286 1.10817 0.97280 0.84497 1.21853 1.06674 0.88353 0.99310 1.70236 1.19793 1.32652 0.99041 1.24840 1.05025 0.80194 0.99530 1.45203 1.49344 1.09844 1.07849 1.22233 1.06110 0.89074 0.90483 1.60180 1.36063 1.31098 1.02221 1.21745 1.00946 0.93833 0.91900 1.19848 0.84913 0.88257 0.84418 1.90543 1.54795 1.15791 1.84663 1.41886 1.58092 1.12397 1.07942 1.19664 1.39884 0.96317 0.86852 0.88037 1.25237 0.97751 0.95754 0.99136 1.69607 1.48722 1.08858 1.27175 0.85899 0.78688 0.79618 0.80359 1.20476 1.20901 1.19391 0.92343 0.92868 0.91642 0.90014 0.88839 0.92278 0.90962 0.91089 0.88590 0.86920 0.82011 0.78040 0.87869 0.89423 0.90555 0.82341 0.94731 0.89835 0.77594 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.41 37.15 0.35 -1.27 16 2 C 0.07 0.86 2.95 -67.72 -0.20 0.66 16 3 H 0.04 0.45 7.80 -51.93 -0.40 0.05 16 4 C 0.11 1.25 5.20 -4.04 -0.02 1.23 16 5 N -0.63 -6.66 2.66 -181.56 -0.48 -7.14 16 6 C 0.08 0.48 10.24 59.85 0.61 1.09 16 7 C 0.50 6.86 6.04 -10.98 -0.07 6.80 16 8 O -0.49 -9.22 14.20 5.56 0.08 -9.14 16 9 C -0.06 -0.66 4.59 -29.03 -0.13 -0.80 16 10 C -0.01 -0.19 5.45 -81.60 -0.44 -0.63 16 11 C -0.01 -0.19 11.79 -17.81 -0.21 -0.40 16 12 N -0.50 -8.48 11.25 -14.67 -0.17 -8.64 16 13 C 0.19 2.86 12.56 -90.37 -1.14 1.72 16 14 N -0.44 -6.66 3.15 -121.37 -0.38 -7.04 16 15 C 0.06 0.88 11.01 59.85 0.66 1.54 16 16 N -0.66 -11.63 5.82 -107.99 -0.63 -12.25 16 17 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 18 C 0.44 10.38 7.82 -10.98 -0.09 10.29 16 19 O -0.57 -15.51 15.08 5.55 0.08 -15.43 16 20 N -0.57 -14.08 5.29 -10.96 -0.06 -14.13 16 21 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 22 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 25 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 29 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.09 1.25 7.42 -51.93 -0.39 0.86 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 36 H 0.07 0.38 6.44 -51.93 -0.33 0.05 16 37 H 0.10 0.90 6.35 -51.93 -0.33 0.57 16 38 H 0.11 0.85 8.11 -51.93 -0.42 0.43 16 39 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.20 2.42 8.06 -52.49 -0.42 2.00 16 41 H 0.10 1.89 7.43 -51.93 -0.39 1.50 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 0.90 7.11 -51.93 -0.37 0.53 16 44 H 0.35 6.65 4.17 -39.29 -0.16 6.48 16 45 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 46 H 0.08 1.44 7.44 -51.93 -0.39 1.06 16 47 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 48 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -36.43 395.54 -8.03 -44.46 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -7.19 Total: 17.74 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -0.94 Total: 13.36 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -0.99 Total: -72.60 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.16 Total: -24.57 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.43 -8.03 -44.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725518957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.486 kcal (2) G-P(sol) polarization free energy of solvation -36.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds