Wall clock time and date at job start Tue Mar 31 2020 19:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47426 * 2 1 4 4 C 1.52999 * 109.47410 * 240.00050 * 2 1 3 5 5 N 1.46501 * 109.47589 * 185.00009 * 4 2 1 6 6 C 1.46503 * 119.99648 * 269.99976 * 5 4 2 7 7 C 1.34771 * 120.00143 * 89.99415 * 5 4 2 8 8 O 1.21276 * 120.00118 * 0.02562 * 7 5 4 9 9 C 1.50706 * 119.99957 * 180.02562 * 7 5 4 10 10 C 1.50697 * 109.47023 * 180.02562 * 9 7 5 11 11 C 1.34675 * 126.59403 * 85.02341 * 10 9 7 12 12 N 1.34124 * 108.02139 * 179.73770 * 11 10 9 13 13 C 1.30503 * 109.25583 * 359.97438 * 12 11 10 14 14 N 1.35041 * 108.69928 * 0.02562 * 13 12 11 15 15 C 1.46499 * 126.39322 * 180.02562 * 14 13 12 16 16 N 1.46903 * 109.47360 * 119.99945 * 2 1 3 17 17 C 1.46901 * 110.99872 * 275.00165 * 16 2 1 18 18 C 1.50702 * 109.46879 * 180.02562 * 17 16 2 19 19 O 1.21284 * 120.00294 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99373 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99370 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00032 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99805 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00167 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00043 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47119 * 89.99935 * 25 23 21 27 27 H 1.48494 * 109.46938 * 209.99870 * 25 23 21 28 28 H 1.48507 * 109.46792 * 329.99589 * 25 23 21 29 29 H 1.08998 * 109.47440 * 299.99760 * 1 2 3 30 30 H 1.08995 * 109.47617 * 60.00462 * 1 2 3 31 31 H 1.09011 * 109.47036 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46959 * 64.99583 * 4 2 1 33 33 H 1.09002 * 109.46926 * 304.99630 * 4 2 1 34 34 H 1.08997 * 109.47515 * 269.99630 * 6 5 4 35 35 H 1.09006 * 109.47202 * 29.99917 * 6 5 4 36 36 H 1.09004 * 109.47216 * 149.99464 * 6 5 4 37 37 H 1.08989 * 109.47052 * 60.00382 * 9 7 5 38 38 H 1.09002 * 109.46804 * 300.00032 * 9 7 5 39 39 H 1.07993 * 125.98561 * 359.73433 * 11 10 9 40 40 H 1.07997 * 125.64686 * 179.97438 * 13 12 11 41 41 H 1.09006 * 109.47289 * 269.95547 * 15 14 13 42 42 H 1.08996 * 109.47327 * 29.95915 * 15 14 13 43 43 H 1.09002 * 109.46825 * 149.95962 * 15 14 13 44 44 H 1.00901 * 110.99888 * 151.05088 * 16 2 1 45 45 H 1.08999 * 109.47135 * 299.99679 * 17 16 2 46 46 H 1.09001 * 109.47390 * 59.99943 * 17 16 2 47 47 H 0.96998 * 120.00513 * 359.97438 * 20 18 17 48 48 H 0.96994 * 120.00536 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.3343 0.2341 -1.7613 7 6 4.0758 -1.8986 -0.6115 8 8 3.3852 -2.7766 -0.1394 9 6 5.5777 -2.0064 -0.5507 10 6 5.9616 -3.2892 0.1408 11 6 6.0772 -4.5044 -0.4281 12 7 6.4418 -5.3754 0.5244 13 6 6.5572 -4.7460 1.6618 14 7 6.2660 -3.4419 1.4665 15 6 6.2753 -2.3875 2.4834 16 7 2.0197 -0.6925 1.1994 17 6 2.0824 0.2226 2.3469 18 6 2.5885 -0.5215 3.5557 19 8 2.8689 -1.6984 3.4699 20 7 2.7287 0.1207 4.7323 21 6 3.1886 -0.5564 5.8322 22 1 3.4382 -1.6043 5.7558 23 6 3.3336 0.1057 7.0452 24 7 3.0303 1.3810 7.1380 25 14 3.9609 -0.8166 8.5436 26 1 5.4419 -0.7223 8.5986 27 1 3.3808 -0.2175 9.7723 28 1 3.5587 -2.2431 8.4510 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0278 0.0005 32 1 1.7516 -0.1583 -2.1369 33 1 1.6054 -1.7198 -1.2951 34 1 4.5424 0.0094 -2.8074 35 1 3.8089 1.1867 -1.6919 36 1 5.2722 0.2954 -1.2093 37 1 5.9806 -1.1594 0.0044 38 1 5.9834 -2.0039 -1.5625 39 1 5.9061 -4.7368 -1.4687 40 1 6.8381 -5.1941 2.6035 41 1 5.2885 -2.3153 2.9410 42 1 7.0139 -2.6268 3.2484 43 1 6.5301 -1.4356 2.0175 44 1 2.9173 -1.1204 1.0287 45 1 2.7588 1.0462 2.1182 46 1 1.0870 0.6163 2.5526 47 1 2.5041 1.0619 4.8010 48 1 3.1319 1.8434 7.9846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725518957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:00 Heat of formation + Delta-G solvation = -21.501919 kcal Electronic energy + Delta-G solvation = -30803.813839 eV Core-core repulsion = 26701.408984 eV Total energy + Delta-G solvation = -4102.404855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.05517 -41.16202 -40.06734 -37.85882 -36.16179 -35.75677 -34.96310 -33.39265 -33.18823 -32.04713 -28.82114 -28.19124 -27.87316 -27.82344 -26.32044 -25.64016 -22.41118 -21.97279 -21.16964 -21.04809 -20.03474 -19.85830 -18.22123 -18.04168 -17.93476 -17.35571 -16.96320 -16.49916 -16.45832 -16.31664 -16.04713 -15.53934 -15.47772 -14.86509 -14.84629 -14.53191 -14.20741 -14.16004 -13.98045 -13.79653 -13.65772 -13.49459 -13.42363 -13.39024 -13.23860 -13.00728 -12.93311 -12.87910 -12.57582 -12.43779 -12.37013 -12.14661 -11.96461 -11.50478 -10.98599 -10.91035 -10.49014 -10.31799 -10.00717 -9.63582 -9.29292 -9.24050 -8.46837 -5.94862 1.01784 1.35696 1.40707 1.52640 1.62935 1.90683 2.03007 2.05336 2.26599 2.28288 2.95400 3.20466 3.50832 3.52028 3.75827 3.85451 3.89619 3.92456 4.01467 4.20622 4.22385 4.28120 4.31963 4.40483 4.42181 4.48024 4.51147 4.55051 4.56833 4.72839 4.74732 4.79119 4.89034 4.93795 4.98815 5.07129 5.36608 5.40671 5.42106 5.58434 5.80074 5.92925 6.18025 6.24161 6.35784 6.51942 6.61167 7.10408 7.13220 7.22625 7.55910 8.12372 8.70621 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008973 B = 0.004344 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.654539 B = 6444.320931 C = 8842.322894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.065 3.935 3 H 0.061 0.939 4 C 0.115 3.885 5 N -0.621 5.621 6 C 0.066 3.934 7 C 0.497 3.503 8 O -0.553 6.553 9 C -0.056 4.056 10 C -0.014 4.014 11 C -0.037 4.037 12 N -0.530 5.530 13 C 0.170 3.830 14 N -0.449 5.449 15 C 0.071 3.929 16 N -0.683 5.683 17 C 0.063 3.937 18 C 0.437 3.563 19 O -0.613 6.613 20 N -0.572 5.572 21 C -0.327 4.327 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.920 5.920 25 Si 0.988 3.012 26 H -0.266 1.266 27 H -0.273 1.273 28 H -0.277 1.277 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.125 0.875 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.225 0.775 41 H 0.054 0.946 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.345 0.655 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.654 5.741 -19.594 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 H 0.079 0.921 4 C -0.008 4.008 5 N -0.356 5.356 6 C -0.075 4.075 7 C 0.285 3.715 8 O -0.430 6.430 9 C -0.096 4.096 10 C -0.130 4.130 11 C -0.185 4.185 12 N -0.248 5.248 13 C -0.112 4.112 14 N -0.130 5.130 15 C -0.071 4.071 16 N -0.322 5.322 17 C -0.070 4.070 18 C 0.224 3.776 19 O -0.499 6.499 20 N -0.209 5.209 21 C -0.456 4.456 22 H 0.094 0.906 23 C -0.209 4.209 24 N -0.561 5.561 25 Si 0.812 3.188 26 H -0.191 1.191 27 H -0.198 1.198 28 H -0.203 1.203 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.143 0.857 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.170 0.830 39 H 0.195 0.805 40 H 0.241 0.759 41 H 0.073 0.927 42 H 0.128 0.872 43 H 0.118 0.882 44 H 0.168 0.832 45 H 0.079 0.921 46 H 0.114 0.886 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.033 3.660 -19.088 20.077 hybrid contribution 0.378 1.233 1.310 1.838 sum 5.411 4.893 -17.778 19.217 Atomic orbital electron populations 1.21738 0.93462 1.01717 1.02405 1.22106 0.96855 0.96359 0.89248 0.92135 1.21750 0.79306 1.01810 0.97890 1.48037 1.07229 1.21614 1.58676 1.22184 0.95505 0.89920 0.99914 1.21082 0.91284 0.81685 0.77426 1.90859 1.65521 1.40623 1.46015 1.20192 0.91529 0.93739 1.04188 1.20856 1.09305 0.98561 0.84271 1.22252 1.07387 0.88779 1.00075 1.70192 1.20861 1.33775 1.00010 1.25363 1.05125 0.80600 1.00132 1.45367 1.49315 1.09932 1.08364 1.22153 1.03871 0.90112 0.90994 1.60181 1.35977 1.32150 1.03877 1.21598 1.01707 0.93743 0.89941 1.20812 0.83384 0.88042 0.85362 1.90530 1.56034 1.17844 1.85442 1.41916 1.58493 1.12458 1.08073 1.19582 1.41857 0.95716 0.88485 0.90550 1.25951 0.97348 0.96536 1.01106 1.69665 1.48701 1.09643 1.28096 0.85002 0.78756 0.77873 0.77179 1.19133 1.19799 1.20252 0.93299 0.89242 0.93834 0.85707 0.91926 0.89774 0.89384 0.89895 0.86582 0.82961 0.80459 0.75905 0.92732 0.87216 0.88203 0.83164 0.92130 0.88619 0.77157 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.41 71.98 0.68 -2.25 16 2 C 0.06 1.52 2.95 44.91 0.13 1.65 16 3 H 0.06 1.18 7.80 -2.39 -0.02 1.17 16 4 C 0.12 2.28 5.20 86.38 0.45 2.73 16 5 N -0.62 -11.57 2.66 -846.74 -2.25 -13.83 16 6 C 0.07 0.54 10.24 127.77 1.31 1.85 16 7 C 0.50 13.14 6.04 87.66 0.53 13.67 16 8 O -0.55 -21.68 14.20 -3.02 -0.04 -21.72 16 9 C -0.06 -1.12 4.59 29.10 0.13 -0.98 16 10 C -0.01 -0.40 5.45 40.95 0.22 -0.18 16 11 C -0.04 -1.15 11.79 83.53 0.98 -0.16 16 12 N -0.53 -18.51 11.25 -200.32 -2.25 -20.77 16 13 C 0.17 5.37 12.56 180.26 2.26 7.63 16 14 N -0.45 -13.74 3.15 -537.89 -1.70 -15.43 16 15 C 0.07 2.00 11.01 127.77 1.41 3.41 16 16 N -0.68 -23.97 5.82 -495.58 -2.88 -26.85 16 17 C 0.06 2.26 5.97 85.56 0.51 2.77 16 18 C 0.44 21.07 7.82 87.66 0.69 21.75 16 19 O -0.61 -34.66 15.08 -3.04 -0.05 -34.70 16 20 N -0.57 -29.02 5.29 -306.98 -1.62 -30.64 16 21 C -0.33 -18.24 9.68 84.04 0.81 -17.43 16 22 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 23 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 24 N -0.92 -48.77 13.05 21.66 0.28 -48.48 16 25 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 29 H 0.05 1.14 7.45 -2.39 -0.02 1.12 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 1.12 8.14 -2.38 -0.02 1.11 16 32 H 0.12 1.38 8.07 -2.39 -0.02 1.36 16 33 H 0.06 1.66 7.42 -2.39 -0.02 1.65 16 34 H 0.08 0.33 8.14 -2.39 -0.02 0.32 16 35 H 0.09 0.50 8.07 -2.38 -0.02 0.48 16 36 H 0.08 0.51 6.44 -2.39 -0.02 0.50 16 37 H 0.12 1.83 6.35 -2.39 -0.02 1.82 16 38 H 0.15 1.75 8.11 -2.39 -0.02 1.73 16 39 H 0.18 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.22 5.54 8.06 -2.91 -0.02 5.52 16 41 H 0.05 2.12 7.43 -2.38 -0.02 2.10 16 42 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.10 2.26 7.11 -2.39 -0.02 2.24 16 44 H 0.34 13.09 4.17 -89.69 -0.37 12.72 16 45 H 0.06 1.87 8.06 -2.39 -0.02 1.85 16 46 H 0.10 3.21 7.44 -2.39 -0.02 3.19 16 47 H 0.39 19.08 7.90 -92.71 -0.73 18.35 16 48 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -84.56 395.54 1.98 -82.58 By element: Atomic # 1 Polarization: 51.16 SS G_CDS: -0.12 Total: 51.04 kcal Atomic # 6 Polarization: 23.83 SS G_CDS: 10.59 Total: 34.42 kcal Atomic # 7 Polarization: -145.57 SS G_CDS: -10.43 Total: -156.00 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -0.09 Total: -56.43 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -84.56 1.98 -82.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725518957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.081 kcal (2) G-P(sol) polarization free energy of solvation -84.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds