Wall clock time and date at job start Tue Mar 31 2020 19:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 N 1.46498 * 109.47043 * 174.99892 * 4 2 1 6 6 C 1.46498 * 120.00326 * 90.00104 * 5 4 2 7 7 C 1.34772 * 119.99821 * 269.99358 * 5 4 2 8 8 O 1.21280 * 120.00242 * 0.02562 * 7 5 4 9 9 C 1.50706 * 119.99951 * 180.02562 * 7 5 4 10 10 C 1.50701 * 109.46939 * 180.02562 * 9 7 5 11 11 C 1.34671 * 126.59080 * 85.02941 * 10 9 7 12 12 N 1.34127 * 108.02329 * 179.97438 * 11 10 9 13 13 C 1.30500 * 109.25268 * 359.97438 * 12 11 10 14 14 N 1.35046 * 108.70191 * 359.77019 * 13 12 11 15 15 C 1.46492 * 126.39950 * 180.26368 * 14 13 12 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00252 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00305 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47102 * 89.99542 * 25 23 21 27 27 H 1.48493 * 109.47421 * 209.99846 * 25 23 21 28 28 H 1.48497 * 109.46772 * 330.00472 * 25 23 21 29 29 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 30 30 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 32 32 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 33 33 H 1.08999 * 109.47502 * 54.99555 * 4 2 1 34 34 H 1.08997 * 109.47736 * 89.99214 * 6 5 4 35 35 H 1.08996 * 109.47163 * 210.00168 * 6 5 4 36 36 H 1.09005 * 109.46872 * 329.99919 * 6 5 4 37 37 H 1.09002 * 109.46748 * 300.00232 * 9 7 5 38 38 H 1.08997 * 109.46958 * 59.99878 * 9 7 5 39 39 H 1.08006 * 125.98811 * 359.95679 * 11 10 9 40 40 H 1.08005 * 125.64821 * 179.97438 * 13 12 11 41 41 H 1.09004 * 109.47841 * 270.12388 * 15 14 13 42 42 H 1.09001 * 109.47086 * 30.12205 * 15 14 13 43 43 H 1.09000 * 109.47197 * 150.12005 * 15 14 13 44 44 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 45 45 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 46 46 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 47 47 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 48 48 H 0.97002 * 120.00635 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.3343 0.2338 1.7612 7 6 4.0756 -1.8988 0.6114 8 8 3.3849 -2.7765 0.1386 9 6 5.5775 -2.0073 0.5515 10 6 5.9613 -3.2894 -0.1413 11 6 6.0743 -3.4815 -1.4694 12 7 6.4348 -4.7570 -1.6750 13 6 6.5500 -5.3624 -0.5247 14 7 6.2685 -4.4807 0.4587 15 6 6.2856 -4.7498 1.8986 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.7708 -0.5438 -8.1004 25 14 2.8982 1.9177 -7.1782 26 1 4.0987 2.7366 -6.8726 27 1 2.4330 2.2163 -8.5564 28 1 1.8192 2.2409 -6.2105 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -0.1585 2.1369 33 1 1.6053 -1.7199 1.2950 34 1 4.5424 0.0090 2.8073 35 1 5.2721 0.2950 1.2091 36 1 3.8090 1.1864 1.6919 37 1 5.9811 -1.1601 -0.0031 38 1 5.9826 -2.0052 1.5634 39 1 5.9042 -2.7388 -2.2349 40 1 6.8279 -6.3963 -0.3826 41 1 5.3003 -5.0912 2.2163 42 1 7.0246 -5.5212 2.1153 43 1 6.5446 -3.8374 2.4357 44 1 2.9172 -1.1206 -1.0288 45 1 1.0870 0.6165 -2.5525 46 1 2.7588 1.0462 -2.1182 47 1 2.5033 1.0618 -4.8013 48 1 3.8716 -0.0817 -8.9473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725518959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:03 Heat of formation + Delta-G solvation = 16.926438 kcal Electronic energy + Delta-G solvation = -30427.237359 eV Core-core repulsion = 26326.498883 eV Total energy + Delta-G solvation = -4100.738476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.97899 -40.19520 -38.31129 -36.71808 -35.03615 -33.99412 -33.80304 -32.31245 -31.55961 -30.89998 -27.94253 -27.29826 -26.96006 -26.45383 -25.35950 -23.65686 -21.30336 -20.92308 -20.11927 -19.31772 -19.05674 -18.24823 -17.31244 -17.04434 -16.63907 -16.20587 -15.68098 -15.38817 -15.18914 -14.93598 -14.59490 -14.41466 -13.85988 -13.65161 -13.56859 -13.37131 -13.11375 -12.98776 -12.90978 -12.82109 -12.72557 -12.61941 -12.53375 -12.24476 -12.09386 -11.99551 -11.87186 -11.56526 -11.41521 -11.14980 -10.90862 -10.51495 -9.87762 -9.86165 -9.71031 -9.45185 -9.41180 -8.84200 -8.39377 -8.16951 -8.06338 -7.95289 -6.19268 -3.70095 2.05083 2.55247 2.76899 2.89334 3.09653 3.12753 3.21044 3.47025 3.88030 4.17830 4.20853 4.41670 4.51565 4.54871 4.75172 4.76536 4.80772 4.86152 4.89960 4.91697 5.07646 5.13267 5.20271 5.21769 5.24218 5.32027 5.33759 5.41096 5.65184 5.67708 5.72588 5.76825 5.93262 5.97990 6.00289 6.04519 6.22126 6.40457 6.42235 6.95532 7.14696 7.30584 7.32552 7.70574 7.80738 8.13046 8.28290 8.30707 8.72848 9.08348 9.55012 9.97385 10.94168 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.003881 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.260925 B = 7212.108920 C = 9345.914353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.039 0.961 4 C 0.114 3.886 5 N -0.629 5.629 6 C 0.076 3.924 7 C 0.501 3.499 8 O -0.487 6.487 9 C -0.058 4.058 10 C -0.023 4.023 11 C 0.015 3.985 12 N -0.486 5.486 13 C 0.179 3.821 14 N -0.459 5.459 15 C 0.074 3.926 16 N -0.657 5.657 17 C 0.047 3.953 18 C 0.448 3.552 19 O -0.550 6.550 20 N -0.594 5.594 21 C -0.301 4.301 22 H 0.120 0.880 23 C 0.040 3.960 24 N -0.883 5.883 25 Si 0.878 3.122 26 H -0.272 1.272 27 H -0.278 1.278 28 H -0.270 1.270 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.171 0.829 40 H 0.203 0.797 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.355 0.645 45 H 0.084 0.916 46 H 0.037 0.963 47 H 0.368 0.632 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 3.589 27.797 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 H 0.057 0.943 4 C -0.009 4.009 5 N -0.366 5.366 6 C -0.067 4.067 7 C 0.288 3.712 8 O -0.358 6.358 9 C -0.099 4.099 10 C -0.136 4.136 11 C -0.133 4.133 12 N -0.204 5.204 13 C -0.102 4.102 14 N -0.144 5.144 15 C -0.069 4.069 16 N -0.296 5.296 17 C -0.086 4.086 18 C 0.234 3.766 19 O -0.431 6.431 20 N -0.235 5.235 21 C -0.429 4.429 22 H 0.138 0.862 23 C -0.162 4.162 24 N -0.524 5.524 25 Si 0.705 3.295 26 H -0.198 1.198 27 H -0.203 1.203 28 H -0.196 1.196 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.189 0.811 40 H 0.219 0.781 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.180 0.820 45 H 0.102 0.898 46 H 0.055 0.945 47 H 0.201 0.799 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.706 1.606 26.588 26.773 hybrid contribution 0.225 2.570 0.747 2.685 sum 2.931 4.176 27.334 27.807 Atomic orbital electron populations 1.21749 0.94092 1.02766 1.01067 1.21931 0.96383 0.95616 0.90563 0.94305 1.21725 0.79040 1.02963 0.97148 1.47964 1.06939 1.21681 1.59979 1.21827 0.95692 0.90817 0.98401 1.20670 0.90545 0.81835 0.78169 1.90884 1.64065 1.38209 1.42639 1.19995 0.93039 0.95162 1.01681 1.20263 1.11691 0.87857 0.93782 1.22181 1.03357 0.94368 0.93407 1.70330 1.18532 1.06555 1.24948 1.24907 1.05655 0.97239 0.82440 1.45136 1.52005 1.09806 1.07430 1.21952 1.03526 1.03001 0.78391 1.60173 1.36356 1.30962 1.02136 1.21772 1.00915 0.93949 0.91976 1.19752 0.84520 0.88365 0.83995 1.90635 1.52760 1.15486 1.84175 1.42211 1.60697 1.10975 1.09604 1.19457 1.39623 0.98060 0.85791 0.86224 1.25014 0.97745 0.98194 0.95263 1.69627 1.45634 1.36358 1.00756 0.86693 0.78885 0.85488 0.78431 1.19795 1.20287 1.19583 0.92342 0.91606 0.92901 0.90061 0.88921 0.92516 0.90868 0.90916 0.86791 0.88748 0.81129 0.78086 0.90733 0.89515 0.90255 0.82018 0.89775 0.94503 0.79926 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.41 37.16 0.35 -1.21 16 2 C 0.07 0.83 2.95 -67.71 -0.20 0.63 16 3 H 0.04 0.44 7.80 -51.93 -0.40 0.03 16 4 C 0.11 1.19 5.20 -4.04 -0.02 1.17 16 5 N -0.63 -6.35 2.66 -181.57 -0.48 -6.83 16 6 C 0.08 0.44 10.24 59.85 0.61 1.05 16 7 C 0.50 6.65 6.04 -10.98 -0.07 6.59 16 8 O -0.49 -9.05 14.20 5.56 0.08 -8.97 16 9 C -0.06 -0.61 4.59 -29.03 -0.13 -0.74 16 10 C -0.02 -0.32 5.45 -81.60 -0.44 -0.77 16 11 C 0.02 0.28 11.79 -17.81 -0.21 0.07 16 12 N -0.49 -9.05 11.25 -14.66 -0.16 -9.22 16 13 C 0.18 2.49 12.56 -90.37 -1.14 1.35 16 14 N -0.46 -5.59 3.15 -121.37 -0.38 -5.97 16 15 C 0.07 0.51 11.00 59.84 0.66 1.17 16 16 N -0.66 -11.64 5.82 -107.99 -0.63 -12.27 16 17 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 18 C 0.45 10.96 7.82 -10.98 -0.09 10.87 16 19 O -0.55 -16.03 15.78 5.55 0.09 -15.94 16 20 N -0.59 -14.92 5.09 -10.96 -0.06 -14.97 16 21 C -0.30 -8.89 10.16 -14.93 -0.15 -9.05 16 22 H 0.12 4.07 7.39 -52.48 -0.39 3.69 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -26.78 13.96 55.50 0.77 -26.01 16 25 Si 0.88 20.06 27.74 -169.99 -4.71 15.34 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -5.66 6.52 56.52 0.37 -5.29 16 29 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.09 1.18 7.42 -51.93 -0.39 0.80 16 34 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.36 6.44 -51.93 -0.33 0.03 16 36 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 37 H 0.11 1.05 7.40 -51.93 -0.38 0.67 16 38 H 0.09 0.65 7.05 -51.93 -0.37 0.28 16 39 H 0.17 3.38 8.06 -52.48 -0.42 2.96 16 40 H 0.20 1.90 8.06 -52.48 -0.42 1.48 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.40 7.11 -51.93 -0.37 0.03 16 44 H 0.35 6.78 4.17 -39.29 -0.16 6.62 16 45 H 0.08 1.40 7.44 -51.93 -0.39 1.01 16 46 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 47 H 0.37 8.12 5.76 -40.82 -0.24 7.88 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 393.83 15.07 5.93 5.93 Total: -1.00 -41.49 393.83 -7.70 -49.19 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -7.19 Total: 16.71 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -0.95 Total: 13.01 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -0.94 Total: -75.27 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.17 Total: -24.92 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.71 Total: 15.34 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -41.49 -7.70 -49.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725518959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.115 kcal (2) G-P(sol) polarization free energy of solvation -41.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds